Wall clock time and date at job start Tue Mar 31 2020 04:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99600 * 2 1 4 4 H 1.48497 * 109.47026 * 269.99671 * 3 2 1 5 5 H 1.48506 * 109.47204 * 29.99845 * 3 2 1 6 6 H 1.48498 * 109.47084 * 149.99564 * 3 2 1 7 7 C 1.38812 * 120.00331 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99679 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99674 * 0.02562 * 7 2 1 10 10 C 1.47585 * 134.48753 * 179.97438 * 9 7 2 11 11 C 1.53947 * 86.11569 * 155.36004 * 10 9 7 12 12 N 1.46494 * 113.74313 * 137.95046 * 11 10 9 13 13 C 1.46768 * 124.35026 * 121.87607 * 12 11 10 14 14 C 1.54477 * 105.47584 * 197.04086 * 13 12 11 15 15 H 1.08997 * 111.00479 * 92.71670 * 14 13 12 16 16 N 1.46500 * 110.97134 * 216.46606 * 14 13 12 17 17 C 1.34773 * 120.00080 * 198.83006 * 16 14 13 18 18 O 1.21506 * 120.00041 * 0.02562 * 17 16 14 19 19 C 1.48152 * 119.99631 * 179.97438 * 17 16 14 20 20 C 1.39813 * 120.92431 * 359.97438 * 19 17 16 21 21 C 1.38155 * 118.99912 * 180.02562 * 20 19 17 22 22 N 1.31814 * 120.89678 * 359.97438 * 21 20 19 23 23 C 1.31803 * 122.04893 * 0.02562 * 22 21 20 24 24 C 1.38154 * 120.90030 * 359.97438 * 23 22 21 25 25 C 1.54629 * 101.76457 * 334.58127 * 14 13 12 26 26 C 1.34421 * 124.35109 * 301.90118 * 12 11 10 27 27 O 1.21275 * 124.94223 * 359.53608 * 26 12 11 28 28 C 1.47805 * 134.46151 * 359.86775 * 9 7 2 29 29 H 0.96991 * 120.00482 * 0.02562 * 1 2 3 30 30 H 1.09000 * 113.77246 * 41.06163 * 10 9 7 31 31 H 1.09001 * 113.76903 * 269.65734 * 10 9 7 32 32 H 1.08999 * 113.74134 * 269.15517 * 11 10 9 33 33 H 1.08996 * 110.24582 * 78.03653 * 13 12 11 34 34 H 1.09003 * 110.24448 * 316.04197 * 13 12 11 35 35 H 0.97001 * 119.99685 * 18.82873 * 16 14 13 36 36 H 1.07995 * 120.50409 * 359.97438 * 20 19 17 37 37 H 1.08000 * 119.54643 * 180.27698 * 21 20 19 38 38 H 1.08000 * 119.55174 * 180.02562 * 23 22 21 39 39 H 1.07998 * 120.49899 * 179.97438 * 24 23 22 40 40 H 1.08994 * 110.48631 * 143.47331 * 25 14 13 41 41 H 1.08999 * 110.48980 * 265.99021 * 25 14 13 42 42 H 1.09003 * 113.77215 * 90.37775 * 28 9 7 43 43 H 1.09004 * 113.83352 * 318.91832 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 1.7204 -3.8101 0.0005 11 6 0.3473 -4.0830 0.6409 12 7 -0.3330 -5.2614 0.0980 13 6 -0.7604 -6.4137 0.9002 14 6 -1.0117 -7.5515 -0.1140 15 1 -0.1194 -8.1641 -0.2429 16 7 -2.1543 -8.3733 0.2924 17 6 -2.3111 -9.6100 -0.2199 18 8 -1.5045 -10.0435 -1.0185 19 6 -3.4664 -10.4412 0.1916 20 6 -4.4052 -9.9622 1.1103 21 6 -5.4669 -10.7712 1.4664 22 7 -5.6009 -11.9776 0.9523 23 6 -4.7390 -12.4673 0.0836 24 6 -3.6480 -11.7265 -0.3280 25 6 -1.3303 -6.7598 -1.4035 26 6 -0.6455 -5.4264 -1.1989 27 8 -0.4130 -4.6230 -2.0771 28 6 -0.1055 -2.7571 0.0025 29 1 -0.4850 0.8399 -0.0004 30 1 2.5627 -4.0323 0.6558 31 1 1.8322 -4.2350 -0.9970 32 1 0.3597 -4.0639 1.7306 33 1 -1.6785 -6.1788 1.4386 34 1 0.0255 -6.6987 1.5997 35 1 -2.7980 -8.0273 0.9302 36 1 -4.3015 -8.9750 1.5358 37 1 -6.1998 -10.4084 2.1719 38 1 -4.8882 -13.4609 -0.3124 39 1 -2.9456 -12.1343 -1.0399 40 1 -0.9201 -7.2694 -2.2752 41 1 -2.4065 -6.6254 -1.5125 42 1 -0.5309 -2.8723 -0.9944 43 1 -0.7186 -2.1400 0.6593 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094693629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:18 Heat of formation + Delta-G solvation = 46.298877 kcal Electronic energy + Delta-G solvation = -27183.696608 eV Core-core repulsion = 23231.592163 eV Total energy + Delta-G solvation = -3952.104445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.20977 -40.48893 -39.32523 -37.29646 -36.49569 -34.44550 -33.17621 -32.17130 -31.74491 -30.31630 -27.68244 -27.21945 -25.24591 -24.75000 -23.98818 -23.41456 -22.08992 -21.19079 -20.45947 -18.79254 -18.36652 -17.37856 -16.80975 -16.45900 -16.34828 -16.20313 -15.83675 -15.52673 -15.31957 -14.70230 -14.57694 -14.32382 -14.22862 -13.96675 -13.80885 -13.60754 -13.55896 -13.30728 -12.46639 -12.27152 -12.11455 -11.90651 -11.63646 -11.42556 -11.22566 -10.86755 -10.76008 -10.70920 -10.44629 -10.22642 -10.03952 -9.98990 -9.81794 -9.75112 -9.51243 -9.24165 -8.68442 -8.23729 -6.83290 -5.73744 -3.05690 0.17803 0.54619 2.39415 2.42434 2.87309 3.22311 3.34140 3.41710 3.46668 3.47836 3.88928 3.94345 4.13065 4.26419 4.37888 4.40667 4.50160 4.52352 4.71308 4.78897 4.95967 5.19648 5.20987 5.25907 5.29017 5.30166 5.46838 5.51316 5.56029 5.61982 5.64595 5.80698 5.95092 6.05336 6.26567 6.49468 6.54793 6.83394 6.90977 7.26818 7.36903 7.43820 7.56409 7.59858 7.62618 7.99711 8.49876 9.07093 9.73249 10.61960 11.43573 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.034748 B = 0.002078 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.615921 B =13469.299696 C =13788.495417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.220 4.220 8 H 0.081 0.919 9 N -0.605 5.605 10 C 0.111 3.889 11 C 0.098 3.902 12 N -0.606 5.606 13 C 0.099 3.901 14 C 0.135 3.865 15 H 0.114 0.886 16 N -0.712 5.712 17 C 0.561 3.439 18 O -0.521 6.521 19 C -0.087 4.087 20 C -0.142 4.142 21 C 0.097 3.903 22 N -0.470 5.470 23 C 0.097 3.903 24 C -0.115 4.115 25 C -0.167 4.167 26 C 0.516 3.484 27 O -0.505 6.505 28 C 0.153 3.847 29 H 0.253 0.747 30 H 0.043 0.957 31 H 0.040 0.960 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.404 0.596 36 H 0.141 0.859 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.150 0.850 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.056 0.944 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.963 -25.053 5.745 27.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.347 4.347 8 H 0.098 0.902 9 N -0.331 5.331 10 C -0.016 4.016 11 C -0.004 4.004 12 N -0.341 5.341 13 C -0.025 4.025 14 C 0.030 3.970 15 H 0.132 0.868 16 N -0.365 5.365 17 C 0.347 3.653 18 O -0.396 6.396 19 C -0.098 4.098 20 C -0.162 4.162 21 C -0.060 4.060 22 N -0.180 5.180 23 C -0.060 4.060 24 C -0.135 4.135 25 C -0.209 4.209 26 C 0.301 3.699 27 O -0.379 6.379 28 C 0.027 3.973 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.124 0.876 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.240 0.760 36 H 0.159 0.841 37 H 0.181 0.819 38 H 0.181 0.819 39 H 0.167 0.833 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.074 0.926 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.854 -24.975 4.987 27.684 hybrid contribution 0.794 1.599 0.022 1.786 sum -10.059 -23.376 5.009 25.937 Atomic orbital electron populations 1.69825 1.05025 1.25309 1.56530 1.24807 0.95705 0.97570 1.02439 0.86094 0.78551 0.83336 0.77618 1.21591 1.21640 1.20602 1.18991 0.90207 0.81699 1.43848 0.90164 1.45712 1.02423 0.99160 1.85830 1.22929 0.94177 0.86893 0.97595 1.24107 0.94283 0.83641 0.98397 1.48507 1.58845 1.18877 1.07901 1.22184 1.01200 0.85307 0.93852 1.21868 0.89882 0.91458 0.93823 0.86842 1.45823 1.28213 1.15473 1.46946 1.18165 0.84937 0.81193 0.80977 1.90820 1.43721 1.71977 1.33100 1.20358 0.95666 0.95604 0.98158 1.22387 0.95121 1.01440 0.97264 1.22817 0.96187 0.89411 0.97539 1.67584 1.28153 1.13875 1.08356 1.22866 0.89808 1.00107 0.93217 1.22368 0.98714 0.93248 0.99210 1.22836 1.03187 0.95142 0.99725 1.20569 0.78821 0.87856 0.82612 1.90799 1.53936 1.47730 1.45441 1.22792 0.88339 0.87169 0.98983 0.93654 0.93892 0.94197 0.87585 0.90841 0.89468 0.75994 0.84126 0.81929 0.81864 0.83275 0.87685 0.87770 0.92605 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.04 11.39 55.49 0.63 -27.41 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.22 -6.38 10.70 -15.06 -0.16 -6.54 16 8 H 0.08 2.24 7.83 -52.48 -0.41 1.82 16 9 N -0.60 -16.23 3.70 -177.86 -0.66 -16.89 16 10 C 0.11 2.40 8.44 -2.96 -0.03 2.38 16 11 C 0.10 1.82 4.81 -70.13 -0.34 1.49 16 12 N -0.61 -8.93 3.15 -166.62 -0.53 -9.46 16 13 C 0.10 0.90 7.07 -3.12 -0.02 0.88 16 14 C 0.13 1.19 3.43 -66.30 -0.23 0.96 16 15 H 0.11 1.08 7.72 -51.93 -0.40 0.68 16 16 N -0.71 -4.77 5.14 -53.07 -0.27 -5.04 16 17 C 0.56 4.93 7.80 -12.19 -0.10 4.83 16 18 O -0.52 -6.46 16.19 5.36 0.09 -6.37 16 19 C -0.09 -0.62 5.91 -104.65 -0.62 -1.23 16 20 C -0.14 -0.70 9.62 -39.02 -0.38 -1.08 16 21 C 0.10 0.54 11.17 -17.59 -0.20 0.35 16 22 N -0.47 -3.52 10.33 -13.30 -0.14 -3.65 16 23 C 0.10 0.61 11.17 -17.59 -0.20 0.41 16 24 C -0.11 -0.79 9.68 -39.02 -0.38 -1.17 16 25 C -0.17 -1.93 6.59 -26.74 -0.18 -2.10 16 26 C 0.52 8.51 7.42 -10.86 -0.08 8.43 16 27 O -0.51 -11.13 14.61 5.56 0.08 -11.05 16 28 C 0.15 3.77 6.90 -2.83 -0.02 3.75 16 29 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.04 0.92 7.25 -51.93 -0.38 0.54 16 32 H 0.11 1.76 8.14 -51.93 -0.42 1.33 16 33 H 0.07 0.51 7.77 -51.93 -0.40 0.11 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.40 1.54 6.51 -40.82 -0.27 1.28 16 36 H 0.14 0.28 6.54 -52.49 -0.34 -0.06 16 37 H 0.16 0.48 8.06 -52.49 -0.42 0.05 16 38 H 0.16 0.60 8.06 -52.49 -0.42 0.17 16 39 H 0.15 0.96 7.74 -52.49 -0.41 0.56 16 40 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 42 H 0.06 1.52 5.72 -51.93 -0.30 1.23 16 43 H 0.07 1.88 7.16 -51.93 -0.37 1.50 16 LS Contribution 360.91 15.07 5.44 5.44 Total: -1.00 -38.43 360.91 -8.75 -47.19 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -5.37 Total: -1.37 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: -3.00 Total: 10.99 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -0.96 Total: -62.45 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.17 Total: -17.42 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -38.43 -8.75 -47.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094693629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.485 kcal (2) G-P(sol) polarization free energy of solvation -38.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds