Wall clock time and date at job start Tue Mar 31 2020 04:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99600 * 2 1 4 4 H 1.48497 * 109.47026 * 269.99671 * 3 2 1 5 5 H 1.48506 * 109.47204 * 29.99845 * 3 2 1 6 6 H 1.48498 * 109.47084 * 149.99564 * 3 2 1 7 7 C 1.38812 * 120.00331 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99679 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99674 * 0.02562 * 7 2 1 10 10 C 1.47585 * 134.48753 * 179.97438 * 9 7 2 11 11 C 1.53947 * 86.11569 * 155.36004 * 10 9 7 12 12 N 1.46494 * 113.74313 * 137.95046 * 11 10 9 13 13 C 1.46768 * 124.35026 * 121.87607 * 12 11 10 14 14 C 1.54477 * 105.47584 * 197.04086 * 13 12 11 15 15 H 1.08997 * 111.00479 * 92.71670 * 14 13 12 16 16 N 1.46500 * 110.97134 * 216.46606 * 14 13 12 17 17 C 1.34773 * 120.00080 * 198.83006 * 16 14 13 18 18 O 1.21506 * 120.00041 * 0.02562 * 17 16 14 19 19 C 1.48152 * 119.99631 * 179.97438 * 17 16 14 20 20 C 1.39813 * 120.92431 * 359.97438 * 19 17 16 21 21 C 1.38155 * 118.99912 * 180.02562 * 20 19 17 22 22 N 1.31814 * 120.89678 * 359.97438 * 21 20 19 23 23 C 1.31803 * 122.04893 * 0.02562 * 22 21 20 24 24 C 1.38154 * 120.90030 * 359.97438 * 23 22 21 25 25 C 1.54629 * 101.76457 * 334.58127 * 14 13 12 26 26 C 1.34421 * 124.35109 * 301.90118 * 12 11 10 27 27 O 1.21275 * 124.94223 * 359.53608 * 26 12 11 28 28 C 1.47805 * 134.46151 * 359.86775 * 9 7 2 29 29 H 0.96991 * 120.00482 * 0.02562 * 1 2 3 30 30 H 1.09000 * 113.77246 * 41.06163 * 10 9 7 31 31 H 1.09001 * 113.76903 * 269.65734 * 10 9 7 32 32 H 1.08999 * 113.74134 * 269.15517 * 11 10 9 33 33 H 1.08996 * 110.24582 * 78.03653 * 13 12 11 34 34 H 1.09003 * 110.24448 * 316.04197 * 13 12 11 35 35 H 0.97001 * 119.99685 * 18.82873 * 16 14 13 36 36 H 1.07995 * 120.50409 * 359.97438 * 20 19 17 37 37 H 1.08000 * 119.54643 * 180.27698 * 21 20 19 38 38 H 1.08000 * 119.55174 * 180.02562 * 23 22 21 39 39 H 1.07998 * 120.49899 * 179.97438 * 24 23 22 40 40 H 1.08994 * 110.48631 * 143.47331 * 25 14 13 41 41 H 1.08999 * 110.48980 * 265.99021 * 25 14 13 42 42 H 1.09003 * 113.77215 * 90.37775 * 28 9 7 43 43 H 1.09004 * 113.83352 * 318.91832 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 1.7204 -3.8101 0.0005 11 6 0.3473 -4.0830 0.6409 12 7 -0.3330 -5.2614 0.0980 13 6 -0.7604 -6.4137 0.9002 14 6 -1.0117 -7.5515 -0.1140 15 1 -0.1194 -8.1641 -0.2429 16 7 -2.1543 -8.3733 0.2924 17 6 -2.3111 -9.6100 -0.2199 18 8 -1.5045 -10.0435 -1.0185 19 6 -3.4664 -10.4412 0.1916 20 6 -4.4052 -9.9622 1.1103 21 6 -5.4669 -10.7712 1.4664 22 7 -5.6009 -11.9776 0.9523 23 6 -4.7390 -12.4673 0.0836 24 6 -3.6480 -11.7265 -0.3280 25 6 -1.3303 -6.7598 -1.4035 26 6 -0.6455 -5.4264 -1.1989 27 8 -0.4130 -4.6230 -2.0771 28 6 -0.1055 -2.7571 0.0025 29 1 -0.4850 0.8399 -0.0004 30 1 2.5627 -4.0323 0.6558 31 1 1.8322 -4.2350 -0.9970 32 1 0.3597 -4.0639 1.7306 33 1 -1.6785 -6.1788 1.4386 34 1 0.0255 -6.6987 1.5997 35 1 -2.7980 -8.0273 0.9302 36 1 -4.3015 -8.9750 1.5358 37 1 -6.1998 -10.4084 2.1719 38 1 -4.8882 -13.4609 -0.3124 39 1 -2.9456 -12.1343 -1.0399 40 1 -0.9201 -7.2694 -2.2752 41 1 -2.4065 -6.6254 -1.5125 42 1 -0.5309 -2.8723 -0.9944 43 1 -0.7186 -2.1400 0.6593 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094693629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:17 Heat of formation + Delta-G solvation = 16.867081 kcal Electronic energy + Delta-G solvation = -27184.972866 eV Core-core repulsion = 23231.592163 eV Total energy + Delta-G solvation = -3953.380703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.03043 -41.39105 -40.08701 -38.93538 -37.67874 -35.43360 -34.30126 -33.60807 -32.23785 -31.48077 -29.20192 -28.48578 -26.62079 -25.91890 -25.15750 -24.38899 -22.87154 -22.16322 -21.81839 -19.81585 -19.35388 -18.79200 -18.07643 -17.71314 -17.24505 -16.87723 -16.68194 -16.50647 -16.28090 -16.12860 -15.75902 -15.55550 -15.12441 -14.89329 -14.77030 -14.64055 -14.51443 -14.34471 -14.04933 -13.61765 -13.42403 -13.28690 -12.86185 -12.81522 -12.64127 -12.57665 -12.27459 -12.04324 -11.91665 -11.52723 -11.46326 -11.10684 -10.96909 -10.71252 -10.48903 -10.20703 -10.15188 -9.59011 -8.95080 -7.93452 -5.27955 -0.32040 0.14257 1.42707 1.46278 1.54784 1.56634 1.70307 1.78771 2.07538 2.47940 2.88150 3.23231 3.26889 3.42461 3.46359 3.53335 3.56347 3.77437 3.84185 3.88731 3.98983 4.00111 4.12584 4.24583 4.51557 4.54971 4.59366 4.64080 4.72247 4.78683 4.83369 4.85781 4.87850 4.91551 5.06775 5.19588 5.21544 5.28182 5.47235 5.65324 5.83383 5.88840 6.23134 6.35955 6.87875 6.95276 7.02748 7.20566 7.56510 8.51887 9.23794 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.034748 B = 0.002078 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.615921 B =13469.299696 C =13788.495417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.984 3.016 4 H -0.292 1.292 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.237 4.237 8 H 0.085 0.915 9 N -0.636 5.636 10 C 0.110 3.890 11 C 0.138 3.862 12 N -0.604 5.604 13 C 0.099 3.901 14 C 0.151 3.849 15 H 0.111 0.889 16 N -0.693 5.693 17 C 0.564 3.436 18 O -0.563 6.563 19 C -0.101 4.101 20 C -0.129 4.129 21 C 0.091 3.909 22 N -0.495 5.495 23 C 0.091 3.909 24 C -0.126 4.126 25 C -0.155 4.155 26 C 0.504 3.496 27 O -0.573 6.573 28 C 0.148 3.852 29 H 0.249 0.751 30 H 0.069 0.931 31 H 0.021 0.979 32 H 0.141 0.859 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.422 0.578 36 H 0.175 0.825 37 H 0.190 0.810 38 H 0.182 0.818 39 H 0.145 0.855 40 H 0.099 0.901 41 H 0.120 0.880 42 H 0.021 0.979 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.395 -26.401 8.316 29.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.263 4.263 3 Si 0.812 3.188 4 H -0.219 1.219 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.365 4.365 8 H 0.103 0.897 9 N -0.363 5.363 10 C -0.016 4.016 11 C 0.034 3.966 12 N -0.338 5.338 13 C -0.023 4.023 14 C 0.044 3.956 15 H 0.129 0.871 16 N -0.347 5.347 17 C 0.351 3.649 18 O -0.441 6.441 19 C -0.113 4.113 20 C -0.149 4.149 21 C -0.066 4.066 22 N -0.205 5.205 23 C -0.066 4.066 24 C -0.147 4.147 25 C -0.196 4.196 26 C 0.292 3.708 27 O -0.451 6.451 28 C 0.022 3.978 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.159 0.841 33 H 0.127 0.873 34 H 0.134 0.866 35 H 0.262 0.738 36 H 0.193 0.807 37 H 0.207 0.793 38 H 0.199 0.801 39 H 0.163 0.837 40 H 0.117 0.883 41 H 0.138 0.862 42 H 0.039 0.961 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.307 -26.396 7.623 29.710 hybrid contribution 0.883 1.936 -0.812 2.278 sum -10.424 -24.459 6.811 27.447 Atomic orbital electron populations 1.70031 1.06595 1.25707 1.57905 1.25735 0.96666 1.01167 1.02703 0.84997 0.77883 0.78642 0.77294 1.21899 1.21549 1.18681 1.19436 0.90852 0.83156 1.43060 0.89695 1.46162 1.03651 1.00591 1.85850 1.23025 0.96983 0.84159 0.97416 1.23396 0.91438 0.82442 0.99283 1.48445 1.57779 1.19315 1.08232 1.22550 1.03758 0.82633 0.93326 1.21616 0.90451 0.91299 0.92188 0.87127 1.45584 1.27863 1.14518 1.46716 1.18409 0.84767 0.81491 0.80203 1.90809 1.45295 1.72945 1.35071 1.20334 0.95866 0.95616 0.99446 1.22692 0.93762 1.02593 0.95855 1.23336 0.96821 0.88879 0.97564 1.67618 1.28766 1.15093 1.08985 1.23140 0.89436 1.00882 0.93093 1.22443 0.99039 0.93683 0.99519 1.22755 1.03311 0.92348 1.01226 1.21443 0.78147 0.88757 0.82431 1.90765 1.56591 1.50247 1.47541 1.22602 0.87287 0.90662 0.97261 0.94209 0.91252 0.96095 0.84117 0.87342 0.86584 0.73835 0.80743 0.79343 0.80121 0.83701 0.88306 0.86229 0.96093 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.95 11.39 21.65 0.25 -59.70 16 2 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 3 Si 0.98 47.19 29.55 68.60 2.03 49.22 16 4 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.24 -13.94 10.70 84.03 0.90 -13.04 16 8 H 0.09 4.75 7.83 -2.91 -0.02 4.73 16 9 N -0.64 -34.73 3.70 -716.62 -2.65 -37.38 16 10 C 0.11 4.72 8.44 86.49 0.73 5.45 16 11 C 0.14 4.93 4.81 46.76 0.22 5.16 16 12 N -0.60 -16.60 3.15 -799.67 -2.52 -19.12 16 13 C 0.10 1.35 7.07 86.83 0.61 1.96 16 14 C 0.15 2.17 3.43 46.05 0.16 2.33 16 15 H 0.11 1.80 7.72 -2.39 -0.02 1.78 16 16 N -0.69 -6.70 5.14 -440.13 -2.26 -8.96 16 17 C 0.56 8.63 7.80 86.88 0.68 9.31 16 18 O -0.56 -13.40 16.19 -3.73 -0.06 -13.47 16 19 C -0.10 -1.22 5.91 -19.88 -0.12 -1.34 16 20 C -0.13 -0.83 9.62 22.63 0.22 -0.61 16 21 C 0.09 0.74 11.17 84.68 0.95 1.69 16 22 N -0.49 -6.49 10.33 -196.00 -2.03 -8.52 16 23 C 0.09 1.04 11.17 84.68 0.95 1.98 16 24 C -0.13 -1.62 9.68 22.63 0.22 -1.40 16 25 C -0.16 -3.35 6.59 30.59 0.20 -3.15 16 26 C 0.50 16.60 7.42 87.90 0.65 17.25 16 27 O -0.57 -26.55 14.61 -3.02 -0.04 -26.60 16 28 C 0.15 7.52 6.90 86.45 0.60 8.11 16 29 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.02 0.99 7.25 -2.39 -0.02 0.98 16 32 H 0.14 4.14 8.14 -2.39 -0.02 4.12 16 33 H 0.11 0.84 7.77 -2.39 -0.02 0.82 16 34 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.42 1.06 6.51 -92.71 -0.60 0.45 16 36 H 0.18 -0.21 6.54 -2.91 -0.02 -0.23 16 37 H 0.19 0.41 8.06 -2.91 -0.02 0.38 16 38 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 39 H 0.15 1.89 7.74 -2.91 -0.02 1.87 16 40 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.12 2.24 8.08 -2.39 -0.02 2.22 16 42 H 0.02 1.22 5.72 -2.39 -0.01 1.21 16 43 H 0.04 2.44 7.16 -2.39 -0.02 2.42 16 Total: -1.00 -90.24 360.91 0.59 -89.65 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 0.45 Total: 4.88 kcal Atomic # 6 Polarization: 22.57 SS G_CDS: 7.43 Total: 30.00 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -9.22 Total: -133.69 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -0.10 Total: -40.06 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -90.24 0.59 -89.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094693629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.514 kcal (2) G-P(sol) polarization free energy of solvation -90.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds