Wall clock time and date at job start Tue Mar 31 2020 05:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39631 * 120.48926 * 169.62736 * 3 2 1 5 5 N 1.31754 * 120.88364 * 179.97438 * 4 3 2 6 6 C 1.31739 * 122.03770 * 359.97438 * 5 4 3 7 7 C 1.39603 * 120.87775 * 359.97438 * 6 5 4 8 8 C 1.47860 * 120.48845 * 179.97438 * 7 6 5 9 9 O 1.21548 * 119.99802 * 180.02562 * 8 7 6 10 10 N 1.34774 * 119.99799 * 0.05480 * 8 7 6 11 11 C 1.46504 * 119.99463 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46881 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47071 * 179.97438 * 12 11 10 14 14 N 1.46903 * 109.47192 * 180.02562 * 13 12 11 15 15 C 1.46900 * 111.00000 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47252 * 179.97438 * 15 14 13 17 17 O 1.21297 * 119.99714 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00247 * 180.02562 * 16 15 14 19 19 C 1.37100 * 119.99877 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00196 * 359.97438 * 19 18 16 21 21 C 1.38949 * 119.99667 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00339 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99793 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.46989 * 60.00009 * 23 21 19 25 25 H 1.48503 * 109.46842 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47100 * 299.99732 * 23 21 19 27 27 C 1.39678 * 120.48945 * 349.60903 * 3 2 1 28 28 H 4.52734 * 13.92750 * 0.02562 * 4 2 1 29 29 H 1.08001 * 119.56006 * 359.97438 * 4 3 2 30 30 H 1.07997 * 119.55680 * 179.97438 * 6 5 4 31 31 H 0.96999 * 120.00139 * 359.97438 * 10 8 7 32 32 H 1.08998 * 109.46710 * 299.99160 * 11 10 8 33 33 H 1.09001 * 109.47029 * 59.99621 * 11 10 8 34 34 H 1.09003 * 109.47263 * 299.99882 * 12 11 10 35 35 H 1.09006 * 109.47163 * 59.99786 * 12 11 10 36 36 H 1.09001 * 109.47487 * 299.99751 * 13 12 11 37 37 H 1.08996 * 109.47635 * 60.00101 * 13 12 11 38 38 H 1.00899 * 111.00322 * 56.04240 * 14 13 12 39 39 H 1.08998 * 109.46915 * 299.99656 * 15 14 13 40 40 H 1.08997 * 109.47196 * 59.99526 * 15 14 13 41 41 H 0.96996 * 120.00009 * 359.97438 * 18 16 15 42 42 H 0.96995 * 120.00266 * 180.02562 * 22 21 19 43 43 H 1.07999 * 120.92008 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3139 1.1845 -0.2166 5 7 4.6314 1.1941 -0.2178 6 6 5.3384 0.1009 -0.0166 7 6 4.7119 -1.1261 0.2091 8 6 5.5139 -2.3479 0.4334 9 8 4.9592 -3.4116 0.6286 10 7 6.8600 -2.2819 0.4220 11 6 7.6545 -3.4924 0.6448 12 6 9.1430 -3.1443 0.5810 13 6 9.9728 -4.4083 0.8143 14 7 11.4020 -4.0740 0.7536 15 6 12.2314 -5.2665 0.9731 16 6 13.6877 -4.8853 0.9032 17 8 14.0036 -3.7336 0.6909 18 7 14.6391 -5.8243 1.0755 19 6 15.9640 -5.4773 1.0125 20 1 16.2453 -4.4517 0.8243 21 6 16.9448 -6.4453 1.1907 22 7 16.6026 -7.6931 1.4202 23 14 18.7500 -5.9727 1.1040 24 1 19.0481 -4.9628 2.1511 25 1 19.5884 -7.1783 1.3253 26 1 19.0485 -5.4016 -0.2338 27 6 3.3152 -1.1829 0.2171 28 1 -1.0500 -0.0010 0.0007 29 1 2.7743 2.1047 -0.3855 30 1 6.4170 0.1547 -0.0264 31 1 7.3027 -1.4329 0.2663 32 1 7.4195 -3.9058 1.6256 33 1 7.4203 -4.2276 -0.1251 34 1 9.3778 -2.7310 -0.4000 35 1 9.3775 -2.4089 1.3507 36 1 9.7381 -4.8212 1.7953 37 1 9.7385 -5.1440 0.0449 38 1 11.6317 -3.3468 1.4143 39 1 12.0120 -5.6859 1.9549 40 1 12.0128 -6.0076 0.2043 41 1 14.3865 -6.7453 1.2449 42 1 17.2872 -8.3687 1.5450 43 1 2.7988 -2.1160 0.3877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166299029.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:40 Heat of formation + Delta-G solvation = 15.001225 kcal Electronic energy + Delta-G solvation = -24921.811811 eV Core-core repulsion = 20968.350198 eV Total energy + Delta-G solvation = -3953.461613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.19167 -39.54520 -38.32768 -36.64588 -35.18386 -34.80342 -33.86386 -33.03715 -31.73582 -31.22371 -30.76641 -27.33096 -25.56860 -24.88688 -24.23383 -23.07772 -21.83369 -21.46078 -19.64602 -19.19317 -18.00500 -17.87094 -17.49667 -17.04811 -16.44021 -16.14599 -15.72761 -15.54640 -15.52737 -14.85478 -14.55074 -14.47159 -14.18512 -14.10714 -13.76876 -13.51753 -13.41478 -13.18188 -12.93339 -12.25571 -12.10738 -11.90086 -11.85546 -11.49226 -11.45586 -11.40457 -11.09922 -10.96643 -10.78013 -10.44548 -10.38750 -10.21867 -10.01025 -9.56125 -9.50583 -9.39574 -8.48597 -8.09299 -7.96724 -6.42111 -3.83141 -0.11892 0.32651 2.06544 2.13152 2.62354 2.66138 3.19936 3.25734 3.30068 3.37396 3.47431 3.72323 3.89998 4.05014 4.12065 4.18947 4.23002 4.28229 4.54042 4.75449 4.77801 4.90875 4.99463 5.14838 5.21306 5.24990 5.35129 5.37315 5.41569 5.45366 5.57975 5.76859 5.83632 5.88324 5.95832 5.97348 6.04615 6.25753 6.86351 6.98462 7.16673 7.17266 7.54530 7.62043 7.69498 8.05488 8.60648 9.17178 9.53635 10.05017 10.75533 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.044004 B = 0.001324 C = 0.001287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.148936 B =21140.595011 C =21743.655845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.158 4.158 3 C -0.044 4.044 4 C 0.147 3.853 5 N -0.480 5.480 6 C 0.142 3.858 7 C -0.183 4.183 8 C 0.563 3.437 9 O -0.531 6.531 10 N -0.721 5.721 11 C 0.120 3.880 12 C -0.131 4.131 13 C 0.063 3.937 14 N -0.670 5.670 15 C 0.051 3.949 16 C 0.440 3.560 17 O -0.584 6.584 18 N -0.563 5.563 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.005 3.995 28 H 0.229 0.771 29 H 0.167 0.833 30 H 0.165 0.835 31 H 0.402 0.598 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.349 0.651 39 H 0.044 0.956 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.066 12.644 -1.429 32.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.159 4.159 3 C -0.047 4.047 4 C -0.010 4.010 5 N -0.187 5.187 6 C -0.016 4.016 7 C -0.188 4.188 8 C 0.349 3.651 9 O -0.408 6.408 10 N -0.373 5.373 11 C -0.003 4.003 12 C -0.169 4.169 13 C -0.068 4.068 14 N -0.302 5.302 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.469 6.469 18 N -0.199 5.199 19 C -0.431 4.431 20 H 0.120 0.880 21 C -0.178 4.178 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.021 4.021 28 H 0.245 0.755 29 H 0.184 0.816 30 H 0.182 0.818 31 H 0.237 0.763 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.168 0.832 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.226 0.774 42 H 0.082 0.918 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -29.590 13.192 -2.223 32.473 hybrid contribution 0.275 -1.015 1.096 1.519 sum -29.315 12.176 -1.127 31.763 Atomic orbital electron populations 1.24985 0.95765 0.97867 0.98139 1.19540 0.91438 1.02599 1.02285 1.16852 0.88298 0.94770 1.04739 1.23206 0.89643 0.97067 0.91094 1.67753 1.07607 1.30010 1.13349 1.23148 1.00645 0.86788 0.90969 1.20930 0.94746 0.95480 1.07656 1.17930 0.82181 0.87858 0.77113 1.90812 1.71315 1.29946 1.48762 1.45906 1.05700 1.12754 1.72902 1.21410 0.90022 0.86520 1.02372 1.21761 0.92109 0.99071 1.03933 1.21820 0.88333 0.96487 1.00131 1.60039 1.01768 1.09978 1.58413 1.21668 0.93197 0.93031 1.00297 1.19809 0.86496 0.86599 0.84575 1.90519 1.82567 1.19567 1.54204 1.41855 1.05733 1.09911 1.62436 1.19663 0.80800 0.96561 1.46054 0.87960 1.25257 1.00595 0.94818 0.97168 1.69600 1.34888 1.01030 1.48786 0.85917 0.81574 0.77680 0.79048 1.19909 1.20965 1.19866 1.21826 0.92375 0.98338 0.89570 0.75480 0.81557 0.81804 0.76256 0.91030 0.90797 0.89947 0.91099 0.95196 0.90716 0.83162 0.93804 0.89536 0.77439 0.91801 0.82948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 19.25 29.55 0.57 -0.16 16 2 C -0.16 -1.08 13.27 -38.83 -0.52 -1.60 16 3 C -0.04 -0.33 5.73 -106.91 -0.61 -0.94 16 4 C 0.15 0.99 10.90 -17.07 -0.19 0.80 16 5 N -0.48 -3.70 10.33 -12.59 -0.13 -3.83 16 6 C 0.14 0.95 10.71 -17.08 -0.18 0.77 16 7 C -0.18 -1.45 5.88 -104.87 -0.62 -2.06 16 8 C 0.56 5.36 7.78 -12.32 -0.10 5.27 16 9 O -0.53 -6.98 16.41 5.32 0.09 -6.89 16 10 N -0.72 -5.31 5.51 -61.25 -0.34 -5.65 16 11 C 0.12 0.99 5.67 -4.04 -0.02 0.96 16 12 C -0.13 -1.11 5.59 -26.73 -0.15 -1.26 16 13 C 0.06 0.69 5.69 -3.82 -0.02 0.66 16 14 N -0.67 -10.25 6.12 -115.06 -0.70 -10.96 16 15 C 0.05 0.88 6.17 -4.98 -0.03 0.84 16 16 C 0.44 10.31 7.82 -10.99 -0.09 10.23 16 17 O -0.58 -15.75 15.78 5.54 0.09 -15.67 16 18 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 19 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 22 N -0.90 -24.46 13.05 55.50 0.72 -23.74 16 23 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 C 0.00 0.04 9.44 -38.46 -0.36 -0.32 16 28 H 0.23 0.22 7.80 -54.09 -0.42 -0.20 16 29 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 30 H 0.16 0.63 6.41 -52.49 -0.34 0.29 16 31 H 0.40 1.91 6.53 -40.82 -0.27 1.65 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.35 5.47 8.43 -39.29 -0.33 5.13 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 42 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.15 1.22 7.73 -52.49 -0.41 0.81 16 LS Contribution 385.91 15.07 5.82 5.82 Total: -1.00 -35.11 385.91 -7.49 -42.60 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -5.40 Total: 11.46 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -2.56 Total: 5.18 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.51 Total: -58.45 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: 0.17 Total: -22.56 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.11 -7.49 -42.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166299029.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.606 kcal (2) G-P(sol) polarization free energy of solvation -35.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds