Wall clock time and date at job start Tue Mar 31 2020 05:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21279 * 120.00059 * 2 1 4 4 N 1.34776 * 119.99811 * 180.02562 * 2 1 3 5 5 C 1.46502 * 119.99735 * 179.97438 * 4 2 1 6 6 H 1.09001 * 109.46808 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.46878 * 60.00211 * 5 4 2 8 8 C 1.50704 * 109.47092 * 64.99780 * 7 5 4 9 9 C 1.34230 * 126.56525 * 264.97277 * 8 7 5 10 10 N 1.36916 * 109.91166 * 180.02562 * 9 8 7 11 11 H 0.97001 * 124.98727 * 180.02562 * 10 9 8 12 12 C 1.37422 * 110.02399 * 0.02562 * 10 9 8 13 13 N 1.32661 * 133.18552 * 180.02562 * 12 10 9 14 14 C 1.31584 * 121.67009 * 179.97438 * 13 12 10 15 15 C 1.38667 * 121.58208 * 0.02562 * 14 13 12 16 16 C 1.38205 * 119.41207 * 359.97438 * 15 14 13 17 17 C 1.39693 * 118.03914 * 0.02562 * 16 15 14 18 18 C 1.50692 * 109.47510 * 300.00118 * 5 4 2 19 19 O 1.21298 * 120.00241 * 20.00089 * 18 5 4 20 20 N 1.34776 * 120.00306 * 199.99482 * 18 5 4 21 21 C 1.46501 * 119.99853 * 0.02562 * 20 18 5 22 22 C 1.37095 * 120.00297 * 179.97438 * 20 18 5 23 23 H 1.08005 * 119.99746 * 22.46726 * 22 20 18 24 24 C 1.38955 * 120.00263 * 202.46215 * 22 20 18 25 25 N 1.31411 * 119.99600 * 11.08122 * 24 22 20 26 26 Si 1.86797 * 119.99932 * 191.08678 * 24 22 20 27 27 H 1.48497 * 109.47331 * 90.00271 * 26 24 22 28 28 H 1.48499 * 109.46871 * 210.00015 * 26 24 22 29 29 H 1.48498 * 109.47228 * 329.99571 * 26 24 22 30 30 H 1.08998 * 109.47051 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46544 * 299.99539 * 1 2 3 32 32 H 1.08998 * 109.46745 * 59.99299 * 1 2 3 33 33 H 0.96995 * 120.00024 * 0.02562 * 4 2 1 34 34 H 1.08999 * 109.47406 * 305.00097 * 7 5 4 35 35 H 1.08999 * 109.47679 * 184.99213 * 7 5 4 36 36 H 1.07999 * 125.04525 * 359.97438 * 9 8 7 37 37 H 1.07997 * 119.21126 * 179.97438 * 14 13 12 38 38 H 1.08000 * 120.29878 * 179.97438 * 15 14 13 39 39 H 1.07997 * 120.98167 * 180.02562 * 16 15 14 40 40 H 1.09004 * 109.47663 * 93.57575 * 21 20 18 41 41 H 1.08997 * 109.47043 * 213.57921 * 21 20 18 42 42 H 1.09000 * 109.47076 * 333.57615 * 21 20 18 43 43 H 0.97002 * 119.99337 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0092 -2.1949 -0.0010 7 6 4.1563 -0.4463 1.2481 8 6 3.7581 -1.2249 2.4754 9 6 2.6713 -1.0183 3.2358 10 7 2.6436 -1.9212 4.2646 11 1 1.9536 -1.9683 4.9449 12 6 3.7366 -2.7509 4.1922 13 7 4.1573 -3.7655 4.9363 14 6 5.2644 -4.4176 4.6529 15 6 6.0488 -4.0769 3.5614 16 6 5.6620 -3.0282 2.7485 17 6 4.4834 -2.3500 3.0680 18 6 4.1478 -0.4565 -1.2315 19 8 3.4192 0.3052 -1.8316 20 7 5.4064 -0.6672 -1.6651 21 6 6.2864 -1.5875 -0.9406 22 6 5.8629 -0.0211 -2.7848 23 1 5.3920 0.8953 -3.1091 24 6 6.9313 -0.5449 -3.5023 25 7 7.3637 -1.7588 -3.2445 26 14 7.7530 0.4763 -4.8332 27 1 8.8614 1.2653 -4.2382 28 1 8.2940 -0.4229 -5.8839 29 1 6.7568 1.3983 -5.4356 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6959 -2.0072 -0.0013 34 1 3.7217 0.5522 1.2945 35 1 5.2426 -0.3681 1.2043 36 1 1.9294 -0.2529 3.0622 37 1 5.5700 -5.2374 5.2861 38 1 6.9540 -4.6261 3.3482 39 1 6.2536 -2.7416 1.8916 40 1 6.2207 -2.5800 -1.3866 41 1 7.3143 -1.2298 -1.0001 42 1 5.9790 -1.6375 0.1039 43 1 8.1093 -2.1246 -3.7457 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183451475.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:50 Heat of formation + Delta-G solvation = 20.439583 kcal Electronic energy + Delta-G solvation = -28959.991390 eV Core-core repulsion = 25006.765602 eV Total energy + Delta-G solvation = -3953.225788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.56053 -39.67617 -37.79909 -37.76432 -34.81695 -34.43173 -33.03656 -31.77075 -31.20115 -29.85844 -29.35720 -27.78486 -26.12555 -24.87482 -23.66339 -23.18565 -22.49833 -20.59316 -19.32719 -18.56815 -18.16330 -17.12160 -16.77881 -16.66132 -15.99114 -15.67640 -15.28219 -15.02304 -14.73720 -14.62019 -14.25417 -13.85129 -13.79531 -13.40443 -13.21368 -12.91780 -12.77677 -12.60251 -12.43743 -12.18859 -12.04416 -11.93089 -11.70270 -11.35861 -11.21080 -11.10205 -10.92690 -10.76777 -10.30028 -10.25026 -10.17682 -9.40155 -9.17286 -8.99949 -8.92797 -8.45467 -8.07801 -7.75986 -7.56171 -6.23568 -3.79461 1.01266 1.38699 2.65433 2.76114 3.20377 3.24212 3.29367 3.36047 3.66683 3.90210 4.05622 4.20431 4.48851 4.71624 4.75830 4.90506 5.03764 5.16498 5.19226 5.23307 5.33652 5.37936 5.54583 5.57612 5.60419 5.67499 5.76955 5.85641 5.92528 6.00171 6.16013 6.24182 6.35476 6.45317 6.57630 6.60924 6.90679 6.92753 7.01958 7.25496 7.27434 7.63874 7.99692 8.01939 8.21302 8.57231 8.87450 9.29666 9.51163 10.09349 10.79756 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.011665 B = 0.004433 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.731837 B = 6314.461052 C = 8368.174465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.511 3.489 3 O -0.512 6.512 4 N -0.715 5.715 5 C 0.149 3.851 6 H 0.093 0.907 7 C -0.062 4.062 8 C -0.138 4.138 9 C 0.060 3.940 10 N -0.583 5.583 11 H 0.416 0.584 12 C 0.284 3.716 13 N -0.506 5.506 14 C 0.133 3.867 15 C -0.205 4.205 16 C -0.024 4.024 17 C -0.145 4.145 18 C 0.442 3.558 19 O -0.558 6.558 20 N -0.451 5.451 21 C 0.109 3.891 22 C -0.298 4.298 23 H 0.097 0.903 24 C 0.029 3.971 25 N -0.888 5.888 26 Si 0.924 3.076 27 H -0.279 1.279 28 H -0.285 1.285 29 H -0.270 1.270 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.395 0.605 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.172 0.828 37 H 0.157 0.843 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.026 0.974 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.284 -6.229 15.137 17.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.297 3.703 3 O -0.386 6.386 4 N -0.367 5.367 5 C 0.039 3.961 6 H 0.111 0.889 7 C -0.101 4.101 8 C -0.146 4.146 9 C -0.065 4.065 10 N -0.190 5.190 11 H 0.254 0.746 12 C 0.050 3.950 13 N -0.219 5.219 14 C -0.032 4.032 15 C -0.227 4.227 16 C -0.050 4.050 17 C -0.152 4.152 18 C 0.228 3.772 19 O -0.439 6.439 20 N -0.172 5.172 21 C -0.035 4.035 22 C -0.426 4.426 23 H 0.115 0.885 24 C -0.174 4.174 25 N -0.528 5.528 26 Si 0.751 3.249 27 H -0.205 1.205 28 H -0.211 1.211 29 H -0.195 1.195 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.228 0.772 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.189 0.811 37 H 0.174 0.826 38 H 0.154 0.846 39 H 0.156 0.844 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.045 0.955 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.704 -5.342 15.528 18.139 hybrid contribution 0.545 -0.108 -1.085 1.219 sum -7.159 -5.450 14.443 17.016 Atomic orbital electron populations 1.21819 0.93185 1.03265 1.04550 1.20430 0.89707 0.83946 0.76180 1.90713 1.69927 1.31060 1.46860 1.45642 1.06025 1.08374 1.76647 1.20758 0.80771 1.00271 0.94251 0.88946 1.20394 1.01748 0.99463 0.88463 1.20247 0.96127 0.98732 0.99450 1.21615 1.00283 0.95428 0.89186 1.41479 1.21864 1.28503 1.27144 0.74645 1.18376 0.89785 0.92946 0.93850 1.66455 1.16834 1.07506 1.31121 1.22386 0.88723 0.96895 0.95202 1.21854 1.02643 1.00292 0.97881 1.21146 0.93339 0.92526 0.97992 1.19824 0.97560 0.99707 0.98151 1.20177 0.82609 0.86932 0.87485 1.90568 1.55546 1.38702 1.59062 1.43517 1.09180 1.39840 1.24621 1.21606 0.95470 0.94915 0.91459 1.19647 1.14116 1.06232 1.02647 0.88547 1.25288 0.98196 0.95614 0.98254 1.69990 1.27106 1.13803 1.41898 0.85949 0.79367 0.79366 0.80176 1.20460 1.21064 1.19479 0.91354 0.89685 0.89168 0.77214 0.88367 0.89804 0.81089 0.82591 0.84572 0.84365 0.92385 0.91434 0.95534 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 10.39 36.01 0.37 -1.51 16 2 C 0.51 8.45 6.70 -10.98 -0.07 8.38 16 3 O -0.51 -11.03 12.96 -17.93 -0.23 -11.26 16 4 N -0.71 -10.97 4.91 -54.93 -0.27 -11.24 16 5 C 0.15 2.67 2.15 -69.09 -0.15 2.52 16 6 H 0.09 1.55 7.15 -51.93 -0.37 1.18 16 7 C -0.06 -1.02 4.73 -27.88 -0.13 -1.15 16 8 C -0.14 -1.91 5.30 -102.76 -0.54 -2.45 16 9 C 0.06 0.69 11.74 -16.69 -0.20 0.49 16 10 N -0.58 -6.27 6.05 -12.14 -0.07 -6.34 16 11 H 0.42 3.28 8.96 -40.82 -0.37 2.91 16 12 C 0.28 3.77 8.43 -155.68 -1.31 2.46 16 13 N -0.51 -6.61 10.39 -12.27 -0.13 -6.74 16 14 C 0.13 1.45 11.14 -17.50 -0.20 1.26 16 15 C -0.21 -2.20 10.10 -39.43 -0.40 -2.60 16 16 C -0.02 -0.30 10.22 -39.05 -0.40 -0.70 16 17 C -0.15 -2.01 6.37 -105.11 -0.67 -2.68 16 18 C 0.44 10.73 6.62 -10.99 -0.07 10.66 16 19 O -0.56 -15.72 13.37 -17.95 -0.24 -15.96 16 20 N -0.45 -11.46 3.02 -122.19 -0.37 -11.83 16 21 C 0.11 2.36 8.14 59.85 0.49 2.85 16 22 C -0.30 -8.41 9.29 -14.93 -0.14 -8.55 16 23 H 0.10 2.90 7.40 -52.48 -0.39 2.51 16 24 C 0.03 0.76 5.13 -17.47 -0.09 0.67 16 25 N -0.89 -23.52 10.58 55.50 0.59 -22.94 16 26 Si 0.92 21.13 29.57 -169.99 -5.03 16.10 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 30 H 0.07 0.57 7.91 -51.93 -0.41 0.16 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.39 4.74 8.67 -40.82 -0.35 4.39 16 34 H 0.10 1.82 6.04 -51.93 -0.31 1.51 16 35 H 0.08 1.43 6.51 -51.93 -0.34 1.09 16 36 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.14 1.67 7.00 -52.49 -0.37 1.30 16 40 H 0.06 1.31 7.46 -51.93 -0.39 0.92 16 41 H 0.07 1.55 7.15 -51.93 -0.37 1.18 16 42 H 0.03 0.47 3.69 -51.93 -0.19 0.27 16 43 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 355.33 15.07 5.35 5.35 Total: -1.00 -36.45 355.33 -9.01 -45.47 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.11 Total: 9.73 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: -3.51 Total: 9.65 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.25 Total: -59.09 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.47 Total: -27.22 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.45 -9.01 -45.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183451475.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.905 kcal (2) G-P(sol) polarization free energy of solvation -36.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds