Wall clock time and date at job start Tue Mar 31 2020 05:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32987 * 1 3 3 C 1.47103 * 120.00054 * 2 1 4 4 O 1.21609 * 120.00015 * 4.97238 * 3 2 1 5 5 N 1.34780 * 119.99918 * 184.96951 * 3 2 1 6 6 C 1.47402 * 120.68495 * 174.74441 * 5 3 2 7 7 C 1.53491 * 108.97453 * 115.76214 * 6 5 3 8 8 C 1.50338 * 108.83867 * 44.85998 * 7 6 5 9 9 C 1.35594 * 125.01136 * 342.27274 * 8 7 6 10 10 N 1.34217 * 107.36453 * 180.26427 * 9 8 7 11 11 H 0.96994 * 125.00266 * 179.75474 * 10 9 8 12 12 N 1.28861 * 109.99019 * 359.77667 * 10 9 8 13 13 C 1.32190 * 110.15607 * 0.12309 * 12 10 9 14 14 C 1.47704 * 126.65784 * 180.02562 * 13 12 10 15 15 O 1.21570 * 120.00346 * 180.02562 * 14 13 12 16 16 N 1.34786 * 120.00036 * 359.97438 * 14 13 12 17 17 C 1.47064 * 136.05458 * 359.63312 * 16 14 13 18 18 C 1.53234 * 88.08069 * 207.20299 * 17 16 14 19 19 C 1.50708 * 114.32684 * 220.47007 * 18 17 16 20 20 H 1.07999 * 119.99864 * 93.75633 * 19 18 17 21 21 C 1.37871 * 119.99977 * 273.76210 * 19 18 17 22 22 N 1.31513 * 120.00004 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00308 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46781 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47499 * 119.99346 * 23 21 19 26 26 H 1.48500 * 109.47451 * 240.00066 * 23 21 19 27 27 C 1.47061 * 136.05786 * 180.02562 * 16 14 13 28 28 C 1.47455 * 120.74412 * 354.76512 * 5 3 2 29 29 H 1.08002 * 120.00218 * 179.97438 * 1 2 3 30 30 H 1.08008 * 119.99984 * 359.97438 * 1 2 3 31 31 H 1.08001 * 119.99811 * 180.02562 * 2 1 3 32 32 H 1.09005 * 109.70714 * 355.86338 * 6 5 3 33 33 H 1.08994 * 109.53208 * 235.55786 * 6 5 3 34 34 H 1.09004 * 109.59362 * 285.01166 * 7 6 5 35 35 H 1.09001 * 109.59637 * 164.70847 * 7 6 5 36 36 H 1.08998 * 113.46792 * 321.93472 * 17 16 14 37 37 H 1.08995 * 113.47011 * 92.37373 * 17 16 14 38 38 H 1.09004 * 114.02238 * 87.71822 * 18 17 16 39 39 H 0.97006 * 120.00310 * 180.02562 * 22 21 19 40 40 H 1.09005 * 113.46716 * 267.62160 * 27 16 14 41 41 H 1.09001 * 113.47264 * 38.06062 * 27 16 14 42 42 H 1.09000 * 109.90979 * 104.99881 * 28 5 3 43 43 H 1.09002 * 109.97347 * 343.88430 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0654 1.2739 0.0000 4 8 1.4608 2.3251 0.0913 5 7 3.4094 1.2761 -0.1011 6 6 4.1529 2.5435 -0.2185 7 6 5.0451 2.7151 1.0185 8 6 5.7359 1.4106 1.3036 9 6 5.3520 0.2045 0.8174 10 7 6.2078 -0.7116 1.2968 11 1 6.1664 -1.6626 1.1110 12 7 7.0922 -0.1414 2.0407 13 6 6.8710 1.1607 2.0947 14 6 7.6628 2.1595 2.8411 15 8 7.3489 3.3334 2.8063 16 7 8.7329 1.7692 3.5618 17 6 9.4058 0.4943 3.8526 18 6 9.8841 1.1072 5.1731 19 6 11.3039 0.7599 5.5404 20 1 12.1107 1.4223 5.2636 21 6 11.5727 -0.4035 6.2297 22 7 10.5901 -1.2099 6.5671 23 14 13.3325 -0.8344 6.6844 24 1 14.2452 0.2289 6.1929 25 1 13.4496 -0.9443 8.1607 26 1 13.7018 -2.1305 6.0607 27 6 9.7372 2.4299 4.4088 28 6 4.1677 0.0115 -0.0971 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9354 0.0004 31 1 1.8698 -0.9353 -0.0004 32 1 3.4523 3.3762 -0.2807 33 1 4.7730 2.5205 -1.1146 34 1 4.4328 2.9993 1.8743 35 1 5.7890 3.4888 0.8282 36 1 8.7166 -0.3394 3.9872 37 1 10.2169 0.2641 3.1619 38 1 9.1817 0.9875 5.9980 39 1 10.7792 -2.0283 7.0524 40 1 10.6377 2.7210 3.8678 41 1 9.3294 3.2387 5.0153 42 1 4.5110 -0.2186 -1.1057 43 1 3.5395 -0.7981 0.2746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268861858.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:06 Heat of formation + Delta-G solvation = 53.318562 kcal Electronic energy + Delta-G solvation = -27596.901260 eV Core-core repulsion = 23645.101212 eV Total energy + Delta-G solvation = -3951.800049 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.96187 -41.03639 -40.88365 -38.73897 -37.69720 -34.65917 -34.51138 -33.60650 -32.60014 -31.41683 -30.62809 -27.36600 -27.03375 -26.67828 -25.53384 -24.62350 -23.28279 -21.88986 -21.00142 -19.76014 -19.38596 -19.07808 -18.73156 -18.25883 -17.77685 -17.19416 -16.85457 -16.78227 -16.55825 -16.19102 -15.95565 -15.44978 -14.98033 -14.87385 -14.72413 -14.37259 -14.14457 -14.01130 -13.93133 -13.49197 -13.26405 -13.18255 -13.09565 -12.78251 -12.65476 -12.57079 -12.41753 -12.18853 -11.85061 -11.51324 -11.06310 -11.01330 -10.88582 -10.74763 -10.54277 -10.50142 -9.89659 -9.77519 -9.55991 -8.15972 -6.27511 0.43863 0.47049 0.92094 1.46465 1.49246 1.58465 1.60920 1.91321 2.09759 2.28114 2.31833 2.46904 3.13182 3.19716 3.40393 3.62384 3.76396 3.83162 3.98755 4.14438 4.26265 4.34824 4.36986 4.39590 4.41867 4.56000 4.60912 4.68932 4.77204 4.83615 4.84356 4.88125 4.89393 5.03719 5.09656 5.23365 5.31946 5.36876 5.53441 5.58398 5.81391 6.04696 6.23004 6.31346 6.71072 6.78341 6.81576 7.06577 7.13633 7.42304 8.94545 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.024838 B = 0.002478 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.042955 B =11297.738098 C =11940.003017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.231 4.231 3 C 0.541 3.459 4 O -0.589 6.589 5 N -0.608 5.608 6 C 0.119 3.881 7 C -0.050 4.050 8 C -0.163 4.163 9 C 0.010 3.990 10 N -0.343 5.343 11 H 0.467 0.533 12 N -0.263 5.263 13 C -0.024 4.024 14 C 0.608 3.392 15 O -0.579 6.579 16 N -0.634 5.634 17 C 0.129 3.871 18 C 0.022 3.978 19 C -0.525 4.525 20 H 0.069 0.931 21 C 0.019 3.981 22 N -0.919 5.919 23 Si 0.961 3.039 24 H -0.263 1.263 25 H -0.283 1.283 26 H -0.279 1.279 27 C 0.108 3.892 28 C 0.189 3.811 29 H 0.153 0.847 30 H 0.093 0.907 31 H 0.167 0.833 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.264 0.736 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.132 0.868 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.404 -5.686 -18.175 25.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.251 4.251 3 C 0.334 3.666 4 O -0.471 6.471 5 N -0.340 5.340 6 C -0.003 4.003 7 C -0.089 4.089 8 C -0.174 4.174 9 C -0.119 4.119 10 N -0.059 5.059 11 H 0.316 0.684 12 N -0.100 5.100 13 C -0.182 4.182 14 C 0.398 3.602 15 O -0.459 6.459 16 N -0.367 5.367 17 C 0.007 3.993 18 C 0.002 3.998 19 C -0.563 4.563 20 H 0.087 0.913 21 C -0.181 4.181 22 N -0.558 5.558 23 Si 0.787 3.213 24 H -0.187 1.187 25 H -0.209 1.209 26 H -0.205 1.205 27 C -0.014 4.014 28 C 0.065 3.935 29 H 0.171 0.829 30 H 0.111 0.889 31 H 0.185 0.815 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.150 0.850 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.336 -5.411 -17.776 24.741 hybrid contribution 0.628 0.118 0.517 0.822 sum -15.707 -5.293 -17.259 23.929 Atomic orbital electron populations 1.25049 0.95258 1.04211 0.87192 1.22988 0.96725 0.96257 1.09163 1.19405 0.81555 0.90922 0.74752 1.90774 1.68508 1.35676 1.52139 1.48167 1.05797 1.07651 1.72383 1.21717 0.94561 0.86786 0.97261 1.20195 0.97449 0.92992 0.98284 1.19947 0.97241 0.97312 1.02910 1.21604 0.98296 0.88540 1.03506 1.42979 1.18558 1.11426 1.32982 0.68377 1.74043 1.14753 1.08159 1.13076 1.21429 1.00221 0.90942 1.05618 1.16879 0.79478 0.86387 0.77496 1.90686 1.71231 1.18415 1.65607 1.49836 1.25762 1.14542 1.46522 1.23184 0.93331 0.85757 0.97064 1.20205 0.96799 0.90813 0.91952 1.21222 0.92084 1.06465 1.36576 0.91278 1.25806 1.01178 0.96190 0.94932 1.70090 1.33283 1.12684 1.39697 0.85452 0.79926 0.78265 0.77682 1.18679 1.20910 1.20517 1.23290 0.89273 0.98171 0.90637 1.20604 0.87422 0.86747 0.98677 0.82950 0.88863 0.81540 0.89203 0.88353 0.92674 0.90065 0.92413 0.90744 0.94598 0.92673 0.89288 0.92077 0.84999 0.84140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 14.31 66.65 0.95 0.25 16 2 C -0.23 -2.41 9.30 23.43 0.22 -2.20 16 3 C 0.54 10.70 7.64 86.57 0.66 11.36 16 4 O -0.59 -17.14 15.67 -4.06 -0.06 -17.20 16 5 N -0.61 -10.36 2.95 -824.38 -2.43 -12.79 16 6 C 0.12 2.44 6.39 86.37 0.55 3.00 16 7 C -0.05 -1.40 5.71 29.90 0.17 -1.22 16 8 C -0.16 -4.76 6.03 -20.02 -0.12 -4.88 16 9 C 0.01 0.19 7.22 41.64 0.30 0.49 16 10 N -0.34 -6.75 6.82 -48.10 -0.33 -7.08 16 11 H 0.47 4.57 8.96 -219.80 -1.97 2.60 16 12 N -0.26 -8.42 10.82 -48.57 -0.53 -8.94 16 13 C -0.02 -0.88 7.09 42.17 0.30 -0.58 16 14 C 0.61 26.71 8.08 86.74 0.70 27.41 16 15 O -0.58 -27.47 16.49 -3.94 -0.06 -27.54 16 16 N -0.63 -28.29 3.69 -862.57 -3.19 -31.47 16 17 C 0.13 5.89 7.35 83.09 0.61 6.50 16 18 C 0.02 1.08 3.77 -11.30 -0.04 1.03 16 19 C -0.53 -27.28 8.83 25.60 0.23 -27.06 16 20 H 0.07 3.45 7.81 -2.91 -0.02 3.43 16 21 C 0.02 1.00 5.46 84.65 0.46 1.46 16 22 N -0.92 -51.35 13.26 21.44 0.28 -51.06 16 23 Si 0.96 41.27 29.54 68.60 2.03 43.29 16 24 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 26 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 27 C 0.11 4.76 8.19 83.17 0.68 5.44 16 28 C 0.19 1.74 6.57 85.50 0.56 2.30 16 29 H 0.15 0.24 8.06 -2.91 -0.02 0.22 16 30 H 0.09 1.26 7.50 -2.91 -0.02 1.24 16 31 H 0.17 0.34 6.08 -2.91 -0.02 0.33 16 32 H 0.09 2.05 7.04 -2.38 -0.02 2.04 16 33 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.08 2.48 7.56 -2.39 -0.02 2.46 16 36 H 0.06 2.72 7.52 -2.39 -0.02 2.70 16 37 H 0.07 3.32 8.10 -2.39 -0.02 3.30 16 38 H 0.04 1.99 8.11 -2.38 -0.02 1.97 16 39 H 0.26 13.94 8.31 -92.70 -0.77 13.17 16 40 H 0.09 3.65 8.10 -2.38 -0.02 3.63 16 41 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.14 0.30 5.71 -2.39 -0.01 0.28 16 Total: -1.00 -79.47 363.90 1.04 -78.43 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -0.91 Total: 11.07 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: 6.23 Total: 23.29 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -6.18 Total: -111.35 kcal Atomic # 8 Polarization: -44.61 SS G_CDS: -0.13 Total: -44.74 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Total: -79.47 1.04 -78.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268861858.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.751 kcal (2) G-P(sol) polarization free energy of solvation -79.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds