Wall clock time and date at job start Tue Mar 31 2020 05:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32987 * 1 3 3 C 1.47104 * 120.00399 * 2 1 4 4 O 1.21618 * 119.99629 * 354.80186 * 3 2 1 5 5 N 1.34773 * 120.00614 * 174.80217 * 3 2 1 6 6 C 1.47036 * 120.83532 * 184.81318 * 5 3 2 7 7 C 1.53411 * 109.32562 * 115.69770 * 6 5 3 8 8 C 1.50667 * 108.77129 * 45.37161 * 7 6 5 9 9 N 1.34413 * 128.66811 * 162.05076 * 8 7 6 10 10 H 0.97003 * 124.95567 * 359.73284 * 9 8 7 11 11 N 1.28835 * 110.09407 * 179.75594 * 9 8 7 12 12 C 1.32223 * 110.15130 * 0.12189 * 11 9 8 13 13 C 1.47704 * 126.70281 * 180.02562 * 12 11 9 14 14 O 1.21566 * 120.00249 * 180.02562 * 13 12 11 15 15 N 1.34781 * 119.99881 * 0.02562 * 13 12 11 16 16 C 1.47067 * 136.05598 * 359.62544 * 15 13 12 17 17 C 1.53749 * 87.88853 * 152.96783 * 16 15 13 18 18 C 1.50703 * 114.09084 * 139.77600 * 17 16 15 19 19 H 1.07997 * 120.00299 * 266.56187 * 18 17 16 20 20 C 1.37876 * 119.99490 * 86.55762 * 18 17 16 21 21 N 1.31520 * 120.00524 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99732 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47490 * 90.00395 * 22 20 18 24 24 H 1.48504 * 109.47440 * 210.00228 * 22 20 18 25 25 H 1.48496 * 109.47242 * 329.99996 * 22 20 18 26 26 C 1.47071 * 136.05967 * 180.02562 * 15 13 12 27 27 C 1.35597 * 124.27328 * 342.02684 * 8 7 6 28 28 C 1.47537 * 120.82707 * 4.52959 * 5 3 2 29 29 H 1.08005 * 119.99740 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00334 * 179.72657 * 1 2 3 31 31 H 1.08000 * 120.00196 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.49850 * 235.65446 * 6 5 3 33 33 H 1.09003 * 109.49273 * 355.70924 * 6 5 3 34 34 H 1.09005 * 109.58474 * 165.15842 * 7 6 5 35 35 H 1.09003 * 109.58630 * 285.44190 * 7 6 5 36 36 H 1.09005 * 113.46549 * 267.70197 * 16 15 13 37 37 H 1.08994 * 113.47168 * 38.13126 * 16 15 13 38 38 H 1.08994 * 114.57440 * 272.66221 * 17 16 15 39 39 H 0.96993 * 120.00115 * 179.97438 * 21 20 18 40 40 H 1.08999 * 113.46144 * 321.86356 * 26 15 13 41 41 H 1.09000 * 113.46638 * 92.29667 * 26 15 13 42 42 H 1.09001 * 109.92490 * 343.36147 * 28 5 3 43 43 H 1.08998 * 109.92645 * 104.56004 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0655 1.2739 0.0000 4 8 1.4611 2.3250 -0.0954 5 7 3.4091 1.2764 0.1057 6 6 4.1543 2.5393 0.2134 7 6 4.8483 2.6044 1.5799 8 6 5.5082 1.2776 1.8522 9 7 6.4751 0.9869 2.7396 10 1 6.8891 1.6266 3.3399 11 7 6.7722 -0.2651 2.6762 12 6 6.0330 -0.8627 1.7571 13 6 6.0730 -2.2913 1.3839 14 8 5.3345 -2.7135 0.5155 15 7 6.9283 -3.1267 2.0061 16 6 7.9469 -3.0071 3.0601 17 6 7.6909 -4.4855 3.3962 18 6 8.9385 -5.2694 3.7124 19 1 9.4446 -5.8171 2.9313 20 6 9.4337 -5.2873 4.9990 21 7 8.8171 -4.6206 5.9504 22 14 10.9805 -6.2584 5.3910 23 1 12.1704 -5.3884 5.2104 24 1 10.9238 -6.7338 6.7967 25 1 11.0773 -7.4252 4.4775 26 6 7.2586 -4.5575 1.9249 27 6 5.2028 0.1258 1.2052 28 6 4.1684 0.0115 0.1226 29 1 -0.5400 0.9354 0.0004 30 1 -0.5401 -0.9353 -0.0045 31 1 1.8699 -0.9353 -0.0004 32 1 4.9028 2.5886 -0.5775 33 1 3.4650 3.3779 0.1146 34 1 5.6017 3.3921 1.5700 35 1 4.1108 2.8139 2.3547 36 1 8.9490 -2.8166 2.6758 37 1 7.6650 -2.3233 3.8607 38 1 6.8834 -4.6552 4.1083 39 1 9.1654 -4.6335 6.8556 40 1 6.3901 -5.1946 1.7581 41 1 8.0793 -4.7754 1.2415 42 1 3.4983 -0.8212 0.3362 43 1 4.6573 -0.1411 -0.8396 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268862704.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:05 Heat of formation + Delta-G solvation = 75.666386 kcal Electronic energy + Delta-G solvation = -27794.257105 eV Core-core repulsion = 23843.426131 eV Total energy + Delta-G solvation = -3950.830974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.87721 -40.04128 -39.26120 -37.05430 -36.75436 -33.55148 -32.75572 -32.59554 -31.75591 -30.36230 -28.91115 -26.18175 -25.45183 -24.91610 -24.66663 -23.25227 -22.32181 -20.30733 -20.07926 -18.72372 -18.26703 -17.90703 -17.11443 -16.76103 -16.27346 -16.21048 -15.86703 -15.37294 -15.15994 -14.67979 -14.49844 -14.34065 -13.96651 -13.90647 -13.41478 -13.22887 -13.11640 -12.75751 -12.53222 -12.30705 -12.15988 -11.82691 -11.54161 -11.47801 -11.29022 -11.00062 -10.89529 -10.71664 -10.32664 -10.08486 -10.00694 -9.78907 -9.37278 -9.21044 -9.05413 -8.98533 -8.74995 -8.56627 -7.85534 -6.16819 -4.22289 1.21492 1.71904 1.98454 2.69120 2.76879 3.13834 3.23941 3.31563 3.34145 3.51462 3.77626 4.23155 4.33709 4.40529 4.50443 4.60423 4.71688 4.88960 4.95704 5.12062 5.14010 5.26158 5.35865 5.41793 5.47164 5.55304 5.58610 5.79643 5.99569 6.04586 6.12309 6.18324 6.23127 6.27000 6.32128 6.44749 6.66065 6.73723 6.90839 6.98155 7.15836 7.57218 7.80964 7.85359 7.95559 8.19554 8.43773 8.73575 8.81409 9.44089 10.92857 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.021623 B = 0.002682 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.632985 B =10436.247416 C =11181.559528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.217 4.217 3 C 0.553 3.447 4 O -0.550 6.550 5 N -0.611 5.611 6 C 0.117 3.883 7 C -0.063 4.063 8 C 0.015 3.985 9 N -0.376 5.376 10 H 0.445 0.555 11 N -0.241 5.241 12 C 0.021 3.979 13 C 0.614 3.386 14 O -0.558 6.558 15 N -0.626 5.626 16 C 0.107 3.893 17 C 0.033 3.967 18 C -0.516 4.516 19 H 0.064 0.936 20 C 0.068 3.932 21 N -0.885 5.885 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 C 0.102 3.898 27 C -0.175 4.175 28 C 0.191 3.809 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.135 0.865 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.263 0.737 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.108 0.892 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.980 14.327 -8.527 18.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.238 4.238 3 C 0.344 3.656 4 O -0.430 6.430 5 N -0.343 5.343 6 C -0.006 4.006 7 C -0.102 4.102 8 C -0.112 4.112 9 N -0.088 5.088 10 H 0.289 0.711 11 N -0.076 5.076 12 C -0.140 4.140 13 C 0.402 3.598 14 O -0.437 6.437 15 N -0.358 5.358 16 C -0.015 4.015 17 C 0.013 3.987 18 C -0.555 4.555 19 H 0.082 0.918 20 C -0.135 4.135 21 N -0.522 5.522 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.020 4.020 27 C -0.186 4.186 28 C 0.069 3.931 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.152 0.848 32 H 0.095 0.905 33 H 0.122 0.878 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.125 0.875 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.970 14.582 -8.171 18.970 hybrid contribution 0.843 0.054 0.291 0.893 sum -8.128 14.637 -7.880 18.504 Atomic orbital electron populations 1.24740 0.95275 1.03235 0.89978 1.22949 0.96490 0.97424 1.06919 1.18668 0.81359 0.89977 0.75571 1.90755 1.67758 1.33622 1.50878 1.48176 1.05993 1.07511 1.72623 1.21521 0.96023 0.87519 0.95584 1.20579 0.99231 0.91317 0.99096 1.20941 0.96032 0.97881 0.96376 1.43157 1.28366 1.07622 1.29646 0.71096 1.74162 1.22526 0.91246 1.19635 1.21589 0.98860 0.95344 0.98218 1.16350 0.80888 0.81986 0.80614 1.90705 1.43833 1.76394 1.32802 1.49854 1.35878 1.11655 1.38435 1.23662 0.89072 1.02003 0.86765 1.20425 0.97695 0.90903 0.89635 1.20901 1.09196 1.30761 0.94596 0.91817 1.25027 0.97237 0.95061 0.96205 1.69961 1.39447 1.41093 1.01649 0.86547 0.83148 0.80371 0.77677 1.20560 1.21169 1.19675 1.23411 0.98367 0.79025 1.01170 1.19829 1.03377 0.91849 1.03538 1.20040 0.91541 0.85355 0.96196 0.86971 0.86572 0.84767 0.90453 0.87809 0.88999 0.89445 0.90998 0.91353 0.91331 0.92689 0.92194 0.90630 0.87458 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.81 14.31 28.91 0.41 -0.40 16 2 C -0.22 -2.27 9.32 -37.81 -0.35 -2.62 16 3 C 0.55 6.89 7.64 -12.67 -0.10 6.79 16 4 O -0.55 -8.15 15.66 5.26 0.08 -8.07 16 5 N -0.61 -6.91 2.96 -175.23 -0.52 -7.43 16 6 C 0.12 1.05 6.37 -3.54 -0.02 1.03 16 7 C -0.06 -0.49 6.46 -27.69 -0.18 -0.67 16 8 C 0.02 0.17 7.15 -82.42 -0.59 -0.41 16 9 N -0.38 -4.44 6.82 33.43 0.23 -4.21 16 10 H 0.44 3.52 8.96 -190.22 -1.71 1.82 16 11 N -0.24 -3.92 10.81 33.26 0.36 -3.56 16 12 C 0.02 0.36 7.09 -83.02 -0.59 -0.23 16 13 C 0.61 12.31 8.08 -12.39 -0.10 12.21 16 14 O -0.56 -11.71 16.78 5.31 0.09 -11.62 16 15 N -0.63 -13.04 3.69 -186.22 -0.69 -13.72 16 16 C 0.11 2.33 7.38 -8.37 -0.06 2.27 16 17 C 0.03 0.77 3.80 -91.11 -0.35 0.42 16 18 C -0.52 -13.09 8.82 -34.44 -0.30 -13.39 16 19 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 20 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 21 N -0.88 -24.14 13.26 55.43 0.74 -23.41 16 22 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 24 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 C 0.10 2.11 8.18 -8.49 -0.07 2.04 16 27 C -0.17 -2.48 6.07 -105.01 -0.64 -3.11 16 28 C 0.19 2.37 5.78 -4.88 -0.03 2.34 16 29 H 0.11 1.01 7.50 -52.48 -0.39 0.62 16 30 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 31 H 0.13 1.30 6.01 -52.49 -0.32 0.99 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.94 7.00 -51.93 -0.36 0.57 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.56 8.10 -51.93 -0.42 1.14 16 37 H 0.07 1.54 7.49 -51.93 -0.39 1.15 16 38 H 0.07 1.77 8.11 -51.93 -0.42 1.34 16 39 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.08 1.49 8.10 -51.93 -0.42 1.07 16 42 H 0.11 1.37 5.38 -51.93 -0.28 1.09 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 364.27 15.07 5.49 5.49 Total: -1.00 -32.29 364.27 -9.09 -41.38 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.79 Total: 2.21 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: -3.06 Total: 7.94 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.12 Total: -52.32 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: 0.17 Total: -19.69 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.29 -9.09 -41.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268862704.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.048 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds