Wall clock time and date at job start Tue Mar 31 2020 05:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32993 * 1 3 3 C 1.47102 * 119.99792 * 2 1 4 4 O 1.21612 * 120.00146 * 359.97438 * 3 2 1 5 5 N 1.34783 * 119.99570 * 179.97438 * 3 2 1 6 6 C 1.47097 * 120.98094 * 179.71526 * 5 3 2 7 7 C 1.53757 * 108.82375 * 116.52716 * 6 5 3 8 8 N 1.46412 * 109.22832 * 45.84967 * 7 6 5 9 9 C 1.37672 * 127.46054 * 161.60846 * 8 7 6 10 10 C 1.46765 * 126.88945 * 359.46428 * 9 8 7 11 11 O 1.21688 * 120.00137 * 354.38870 * 10 9 8 12 12 N 1.34771 * 120.00026 * 174.39484 * 10 9 8 13 13 C 1.47066 * 136.05694 * 4.05919 * 12 10 9 14 14 C 1.53243 * 88.08193 * 207.20918 * 13 12 10 15 15 C 1.50702 * 114.32410 * 220.46974 * 14 13 12 16 16 H 1.08002 * 119.99937 * 93.76444 * 15 14 13 17 17 C 1.37878 * 119.99836 * 273.75604 * 15 14 13 18 18 N 1.31521 * 119.99514 * 179.97438 * 17 15 14 19 19 Si 1.86789 * 120.00327 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47326 * 89.99525 * 19 17 15 21 21 H 1.48503 * 109.47250 * 209.99619 * 19 17 15 22 22 H 1.48503 * 109.47273 * 329.99897 * 19 17 15 23 23 C 1.47071 * 136.05767 * 184.44300 * 12 10 9 24 24 C 1.36814 * 106.22202 * 179.43476 * 9 8 7 25 25 N 1.33475 * 107.83827 * 0.13696 * 24 9 8 26 26 C 1.30442 * 109.62907 * 0.11344 * 25 24 9 27 27 C 1.47430 * 120.98659 * 359.97438 * 5 3 2 28 28 H 1.08001 * 120.00219 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99967 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00219 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.53531 * 236.40793 * 6 5 3 32 32 H 1.08999 * 109.53806 * 356.64060 * 6 5 3 33 33 H 1.09003 * 109.61637 * 285.86498 * 7 6 5 34 34 H 1.09003 * 109.46135 * 165.73581 * 7 6 5 35 35 H 1.08994 * 113.46931 * 321.94280 * 13 12 10 36 36 H 1.08997 * 113.46555 * 92.38436 * 13 12 10 37 37 H 1.09004 * 114.19800 * 87.73061 * 14 13 12 38 38 H 0.96998 * 119.99705 * 179.97438 * 18 17 15 39 39 H 1.08999 * 113.46348 * 267.61512 * 23 12 10 40 40 H 1.09004 * 113.46724 * 38.04967 * 23 12 10 41 41 H 1.07999 * 126.07942 * 180.14355 * 24 9 8 42 42 H 1.08999 * 109.93238 * 342.54576 * 27 5 3 43 43 H 1.08998 * 109.92849 * 103.67394 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0654 1.2740 0.0000 4 8 1.4573 2.3272 -0.0005 5 7 3.4132 1.2739 0.0005 6 6 4.1705 2.5350 -0.0057 7 6 4.9826 2.6325 1.2962 8 7 5.6480 1.3525 1.5464 9 6 6.7185 1.1139 2.3785 10 6 7.4378 2.1000 3.1936 11 8 7.1668 3.2824 3.0978 12 7 8.3985 1.6959 4.0481 13 6 9.0456 0.4195 4.3871 14 6 9.3148 0.9864 5.7851 15 6 10.6721 0.6437 6.3432 16 1 11.4981 1.3271 6.2122 17 6 10.8593 -0.5422 7.0211 18 7 12.0440 -0.8414 7.5076 19 14 9.4309 -1.7244 7.2472 20 1 9.3870 -2.6721 6.1048 21 1 9.6106 -2.4817 8.5120 22 1 8.1594 -0.9593 7.3047 23 6 9.2563 2.3362 5.0566 24 6 6.9770 -0.2270 2.2938 25 7 6.0970 -0.7601 1.4435 26 6 5.3052 0.1723 0.9906 27 6 4.1722 0.0100 0.0017 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8700 -0.9353 0.0004 31 1 4.8457 2.5504 -0.8613 32 1 3.4790 3.3751 -0.0706 33 1 4.3160 2.8647 2.1268 34 1 5.7311 3.4189 1.1993 35 1 8.3601 -0.4278 4.3884 36 1 9.9530 0.2274 3.8145 37 1 8.5039 0.8266 6.4958 38 1 12.1757 -1.6756 7.9849 39 1 10.2203 2.6597 4.6641 40 1 8.7495 3.1153 5.6261 41 1 7.7546 -0.7593 2.8213 42 1 3.5253 -0.8116 0.3093 43 1 4.5715 -0.1845 -0.9937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268862706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:10 Heat of formation + Delta-G solvation = 76.223558 kcal Electronic energy + Delta-G solvation = -27839.721076 eV Core-core repulsion = 23888.914263 eV Total energy + Delta-G solvation = -3950.806813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.61870 -40.30437 -39.57832 -37.32748 -36.84179 -34.34208 -33.28205 -32.73527 -31.17489 -30.23759 -29.40730 -26.96494 -25.39738 -25.16105 -25.03064 -22.87936 -22.35634 -20.52826 -20.06021 -19.02276 -18.69923 -17.97230 -17.44169 -17.16527 -16.65082 -16.45908 -15.98261 -15.57947 -15.18993 -14.99757 -14.75726 -14.45382 -14.05473 -14.00119 -13.68648 -13.57487 -13.24985 -13.18982 -12.92978 -12.69984 -12.48768 -12.19542 -12.00145 -11.88337 -11.85420 -10.98213 -10.86164 -10.46663 -10.37315 -10.32998 -10.05467 -9.92099 -9.86358 -9.53968 -9.39971 -9.29179 -8.72809 -8.63814 -8.17184 -6.25441 -4.29430 0.89358 1.27194 2.02210 2.46856 2.68989 2.79706 3.18458 3.26681 3.29396 3.33342 3.47638 3.77002 3.93101 4.11096 4.26570 4.42887 4.53955 4.61659 4.77244 4.86750 4.93035 4.96627 5.02814 5.11096 5.18191 5.28484 5.38511 5.58775 5.60475 5.74947 5.79740 5.85065 5.88299 6.03870 6.13455 6.21240 6.27604 6.37351 6.50765 6.69506 6.84336 7.09110 7.47655 7.58429 7.73891 8.10138 8.29348 8.40917 8.77417 9.34533 10.86229 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.020671 B = 0.002804 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.230527 B = 9982.575581 C =10730.443921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.223 4.223 3 C 0.555 3.445 4 O -0.537 6.537 5 N -0.620 5.620 6 C 0.099 3.901 7 C 0.090 3.910 8 N -0.419 5.419 9 C -0.059 4.059 10 C 0.610 3.390 11 O -0.565 6.565 12 N -0.630 5.630 13 C 0.078 3.922 14 C -0.011 4.011 15 C -0.512 4.512 16 H 0.081 0.919 17 C 0.079 3.921 18 N -0.890 5.890 19 Si 0.871 3.129 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.262 1.262 23 C 0.121 3.879 24 C 0.033 3.967 25 N -0.480 5.480 26 C 0.197 3.803 27 C 0.201 3.799 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.133 0.867 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.267 0.733 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.188 0.812 42 H 0.119 0.881 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.617 -0.294 -16.563 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.243 4.243 3 C 0.347 3.653 4 O -0.415 6.415 5 N -0.354 5.354 6 C -0.024 4.024 7 C -0.033 4.033 8 N -0.101 5.101 9 C -0.176 4.176 10 C 0.399 3.601 11 O -0.446 6.446 12 N -0.362 5.362 13 C -0.044 4.044 14 C -0.031 4.031 15 C -0.550 4.550 16 H 0.099 0.901 17 C -0.125 4.125 18 N -0.526 5.526 19 Si 0.698 3.302 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.187 1.187 23 C 0.000 4.000 24 C -0.121 4.121 25 N -0.199 5.199 26 C -0.066 4.066 27 C 0.077 3.923 28 H 0.133 0.867 29 H 0.137 0.863 30 H 0.151 0.849 31 H 0.105 0.895 32 H 0.138 0.862 33 H 0.110 0.890 34 H 0.136 0.864 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.205 0.795 42 H 0.137 0.863 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.248 0.193 -16.889 25.608 hybrid contribution -0.341 -0.077 0.436 0.559 sum -19.589 0.117 -16.453 25.582 Atomic orbital electron populations 1.24821 0.95235 1.03607 0.88556 1.22820 0.96499 0.96833 1.08186 1.18710 0.80965 0.90310 0.75353 1.90802 1.67283 1.33409 1.49972 1.48127 1.05891 1.07025 1.74389 1.22110 0.95553 0.88242 0.96476 1.22576 0.97589 0.84170 0.98939 1.44971 1.23563 1.09265 1.32285 1.20792 0.96327 0.96849 1.03623 1.16182 0.79724 0.86003 0.78153 1.90750 1.68468 1.17336 1.68081 1.49549 1.34590 1.15121 1.36935 1.24075 0.95352 0.85789 0.99194 1.20876 0.99402 0.91418 0.91366 1.20725 0.93343 1.05518 1.35408 0.90062 1.24998 0.95539 0.97735 0.94249 1.69886 1.22152 1.24401 1.36187 0.86916 0.83428 0.81489 0.78366 1.19670 1.21106 1.18706 1.23195 0.92198 0.98544 0.86103 1.23144 0.99995 0.90133 0.98780 1.69868 1.06419 1.30385 1.13194 1.23376 1.00619 0.81403 1.01172 1.20311 0.88629 0.86809 0.96595 0.86701 0.86302 0.84930 0.89502 0.86176 0.89026 0.86446 0.92134 0.88868 0.91371 0.92258 0.89722 0.91704 0.79508 0.86288 0.87824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 14.31 28.91 0.41 -0.05 16 2 C -0.22 -1.51 9.31 -37.81 -0.35 -1.86 16 3 C 0.56 5.51 7.66 -12.66 -0.10 5.41 16 4 O -0.54 -7.03 15.66 5.27 0.08 -6.95 16 5 N -0.62 -5.63 2.96 -174.42 -0.52 -6.14 16 6 C 0.10 0.88 6.47 -3.32 -0.02 0.86 16 7 C 0.09 1.05 6.42 -3.70 -0.02 1.03 16 8 N -0.42 -5.89 3.15 -109.44 -0.35 -6.23 16 9 C -0.06 -0.98 6.92 -82.31 -0.57 -1.55 16 10 C 0.61 11.44 8.03 -12.82 -0.10 11.34 16 11 O -0.56 -11.55 16.04 5.20 0.08 -11.47 16 12 N -0.63 -11.78 3.69 -186.91 -0.69 -12.47 16 13 C 0.08 1.45 6.24 -8.63 -0.05 1.39 16 14 C -0.01 -0.23 2.99 -91.39 -0.27 -0.50 16 15 C -0.51 -12.77 9.38 -34.44 -0.32 -13.09 16 16 H 0.08 2.20 8.06 -52.49 -0.42 1.77 16 17 C 0.08 2.05 5.47 -17.82 -0.10 1.96 16 18 N -0.89 -25.06 13.96 55.43 0.77 -24.29 16 19 Si 0.87 19.47 27.42 -169.99 -4.66 14.81 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.26 -5.65 6.22 56.52 0.35 -5.30 16 23 C 0.12 2.30 8.19 -8.50 -0.07 2.23 16 24 C 0.03 0.52 11.00 -17.35 -0.19 0.33 16 25 N -0.48 -7.10 11.20 -10.33 -0.12 -7.21 16 26 C 0.20 2.49 7.76 -155.33 -1.21 1.29 16 27 C 0.20 1.63 6.63 -4.41 -0.03 1.60 16 28 H 0.11 0.76 7.49 -52.49 -0.39 0.37 16 29 H 0.12 0.33 8.06 -52.48 -0.42 -0.09 16 30 H 0.13 0.58 6.06 -52.49 -0.32 0.26 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.12 1.06 7.02 -51.93 -0.36 0.70 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.12 1.43 7.12 -51.93 -0.37 1.06 16 35 H 0.06 1.04 6.18 -51.93 -0.32 0.72 16 36 H 0.09 1.68 8.10 -51.93 -0.42 1.26 16 37 H 0.07 1.46 6.50 -51.93 -0.34 1.13 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.19 2.82 5.25 -52.49 -0.28 2.54 16 42 H 0.12 0.73 5.67 -51.93 -0.29 0.43 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 355.76 15.07 5.36 5.36 Total: -1.00 -32.87 355.76 -8.26 -41.13 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.24 Total: 3.11 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: -3.00 Total: 10.37 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.89 Total: -56.35 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.17 Total: -18.42 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.66 Total: 14.81 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.87 -8.26 -41.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268862706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.351 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds