Wall clock time and date at job start Tue Mar 31 2020 05:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32991 * 1 3 3 C 1.47111 * 119.99614 * 2 1 4 4 O 1.21613 * 120.00033 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99716 * 180.02562 * 3 2 1 6 6 C 1.47062 * 120.95614 * 180.02562 * 5 3 2 7 7 C 1.53256 * 109.19941 * 116.04412 * 6 5 3 8 8 N 1.46539 * 109.22941 * 45.99713 * 7 6 5 9 9 C 1.34960 * 127.27402 * 161.44909 * 8 7 6 10 10 C 1.36559 * 106.83780 * 179.53080 * 9 8 7 11 11 C 1.47330 * 126.21052 * 180.09158 * 10 9 8 12 12 O 1.21624 * 119.99956 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99902 * 180.02562 * 11 10 9 14 14 C 1.47063 * 136.05616 * 359.63154 * 13 11 10 15 15 C 1.53239 * 88.08241 * 207.20688 * 14 13 11 16 16 C 1.50707 * 114.32409 * 220.47671 * 15 14 13 17 17 H 1.07994 * 120.00171 * 93.75572 * 16 15 14 18 18 C 1.37883 * 119.99520 * 273.75277 * 16 15 14 19 19 N 1.31515 * 119.99602 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 120.00069 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47271 * 89.99856 * 20 18 16 22 22 H 1.48502 * 109.47256 * 209.99722 * 20 18 16 23 23 H 1.48505 * 109.47317 * 329.99859 * 20 18 16 24 24 C 1.47067 * 136.05541 * 180.02562 * 13 11 10 25 25 N 1.35905 * 107.57978 * 0.12760 * 10 9 8 26 26 C 1.29686 * 108.79509 * 0.11209 * 25 10 9 27 27 C 1.47435 * 120.95948 * 359.71283 * 5 3 2 28 28 H 1.08002 * 120.00602 * 0.02562 * 1 2 3 29 29 H 1.08005 * 119.99630 * 179.72404 * 1 2 3 30 30 H 1.07992 * 120.00607 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.51622 * 235.96350 * 6 5 3 32 32 H 1.09004 * 109.52245 * 356.07470 * 6 5 3 33 33 H 1.09001 * 109.51298 * 165.92300 * 7 6 5 34 34 H 1.08993 * 109.51226 * 286.02319 * 7 6 5 35 35 H 1.07998 * 126.58512 * 359.49429 * 9 8 7 36 36 H 1.09004 * 113.46907 * 321.93334 * 14 13 11 37 37 H 1.08993 * 113.46605 * 92.37883 * 14 13 11 38 38 H 1.08994 * 114.20508 * 87.72880 * 15 14 13 39 39 H 0.97005 * 119.99596 * 179.97438 * 19 18 16 40 40 H 1.08997 * 113.46637 * 267.61853 * 24 13 11 41 41 H 1.09001 * 113.47178 * 38.05968 * 24 13 11 42 42 H 1.08994 * 109.94704 * 342.75777 * 27 5 3 43 43 H 1.09006 * 109.93602 * 104.00041 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0654 1.2741 0.0000 4 8 1.4572 2.3272 -0.0005 5 7 3.4132 1.2741 -0.0005 6 6 4.1696 2.5353 0.0000 7 6 4.9743 2.6397 1.3001 8 7 5.6466 1.3629 1.5556 9 6 6.6966 1.1415 2.3740 10 6 6.9772 -0.1932 2.3050 11 6 8.0473 -0.8964 3.0339 12 8 8.7804 -0.2789 3.7825 13 7 8.2136 -2.2239 2.8710 14 6 7.5571 -3.2859 2.0938 15 6 8.0161 -4.2818 3.1642 16 6 8.5021 -5.5998 2.6181 17 1 9.5542 -5.7496 2.4259 18 6 7.6034 -6.6142 2.3641 19 7 8.0276 -7.7644 1.8881 20 14 5.7836 -6.3546 2.6960 21 1 5.1314 -5.8084 1.4789 22 1 5.1558 -7.6519 3.0541 23 1 5.6168 -5.3973 3.8189 24 6 9.1272 -3.2491 3.3975 25 7 6.0909 -0.7549 1.4414 26 6 5.3015 0.1707 0.9920 27 6 4.1716 0.0098 0.0052 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5400 -0.9354 -0.0045 30 1 1.8700 -0.9352 -0.0004 31 1 4.8497 2.5523 -0.8516 32 1 3.4779 3.3749 -0.0695 33 1 5.7185 3.4304 1.2051 34 1 4.3022 2.8698 2.1268 35 1 7.2157 1.8783 2.9689 36 1 6.4738 -3.1777 2.0397 37 1 8.0136 -3.4555 1.1187 38 1 7.3245 -4.3904 3.9995 39 1 7.3954 -8.4782 1.7097 40 1 10.0064 -3.4088 2.7734 41 1 9.3762 -3.1097 4.4495 42 1 3.5239 -0.8110 0.3131 43 1 4.5750 -0.1861 -0.9883 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268862880.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:12 Heat of formation + Delta-G solvation = 74.519606 kcal Electronic energy + Delta-G solvation = -27751.169351 eV Core-core repulsion = 23800.288649 eV Total energy + Delta-G solvation = -3950.880702 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.61592 -40.31521 -39.32428 -37.20527 -36.66253 -34.56328 -33.31394 -32.56958 -30.90104 -30.16451 -29.40279 -26.77644 -25.61199 -24.98501 -24.92138 -22.69215 -22.42373 -20.46771 -19.92410 -18.80000 -18.52283 -18.14559 -17.40406 -17.04602 -16.76109 -16.15630 -15.94585 -15.48059 -15.29376 -14.94882 -14.68483 -14.22187 -14.20664 -13.92297 -13.76620 -13.60501 -13.35221 -13.07483 -12.82174 -12.73867 -12.25236 -12.20664 -12.04143 -11.67268 -11.59867 -10.86853 -10.67886 -10.50301 -10.32725 -10.29966 -9.95832 -9.91813 -9.76624 -9.44303 -9.36162 -9.10205 -8.62254 -8.59206 -7.88905 -6.14229 -4.16165 0.91022 1.57006 1.99701 2.33526 2.51516 2.78787 3.27644 3.34784 3.38964 3.50217 3.81317 3.84689 3.90862 3.97251 4.37720 4.38080 4.42430 4.57009 4.60735 4.86024 4.93367 4.96485 5.06444 5.11136 5.12963 5.17406 5.35978 5.55474 5.78348 5.83644 5.88247 5.90835 6.07933 6.16061 6.33081 6.37955 6.56439 6.62429 6.65518 6.66972 6.84783 7.28664 7.55890 7.63351 7.71097 8.39186 8.45983 8.74769 8.88988 9.47120 10.97842 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.011798 B = 0.003539 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.800346 B = 7910.560276 C = 9937.518592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.225 4.225 3 C 0.557 3.443 4 O -0.540 6.540 5 N -0.618 5.618 6 C 0.099 3.901 7 C 0.088 3.912 8 N -0.454 5.454 9 C 0.035 3.965 10 C -0.041 4.041 11 C 0.618 3.382 12 O -0.566 6.566 13 N -0.627 5.627 14 C 0.102 3.898 15 C -0.018 4.018 16 C -0.507 4.507 17 H 0.080 0.920 18 C 0.077 3.923 19 N -0.895 5.895 20 Si 0.874 3.126 21 H -0.273 1.273 22 H -0.288 1.288 23 H -0.263 1.263 24 C 0.116 3.884 25 N -0.432 5.432 26 C 0.181 3.819 27 C 0.200 3.800 28 H 0.114 0.886 29 H 0.120 0.880 30 H 0.135 0.865 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.190 0.810 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.265 0.735 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.119 0.881 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.150 19.979 -6.108 24.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.245 4.245 3 C 0.349 3.651 4 O -0.418 6.418 5 N -0.352 5.352 6 C -0.024 4.024 7 C -0.035 4.035 8 N -0.137 5.137 9 C -0.104 4.104 10 C -0.171 4.171 11 C 0.407 3.593 12 O -0.447 6.447 13 N -0.359 5.359 14 C -0.021 4.021 15 C -0.038 4.038 16 C -0.545 4.545 17 H 0.098 0.902 18 C -0.126 4.126 19 N -0.532 5.532 20 Si 0.701 3.299 21 H -0.198 1.198 22 H -0.214 1.214 23 H -0.187 1.187 24 C -0.006 4.006 25 N -0.152 5.152 26 C -0.083 4.083 27 C 0.076 3.924 28 H 0.132 0.868 29 H 0.138 0.862 30 H 0.152 0.848 31 H 0.105 0.895 32 H 0.137 0.863 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.207 0.793 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.137 0.863 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.253 20.173 -5.992 24.870 hybrid contribution -0.758 0.849 0.300 1.177 sum -14.011 21.022 -5.692 25.897 Atomic orbital electron populations 1.24827 0.95228 1.03608 0.88420 1.22843 0.96546 0.96915 1.08214 1.18714 0.80937 0.90295 0.75140 1.90790 1.67335 1.33424 1.50239 1.48072 1.05848 1.06918 1.74400 1.21891 0.95736 0.88534 0.96223 1.22430 0.97264 0.84034 0.99741 1.45173 1.25063 1.09335 1.34129 1.22453 0.91654 0.98372 0.97887 1.20697 1.01123 0.91314 1.03957 1.16343 0.82150 0.79874 0.80932 1.90742 1.47669 1.66061 1.40238 1.49643 1.35509 1.04808 1.45915 1.23679 0.97832 0.82993 0.97592 1.20918 0.94356 0.93361 0.95137 1.20770 0.96206 0.94483 1.43067 0.90227 1.24980 0.98820 0.94720 0.94065 1.69901 1.35111 1.04062 1.44156 0.86867 0.85682 0.77694 0.79638 1.19803 1.21403 1.18747 1.23149 0.95151 0.83765 0.98550 1.70471 1.04642 1.29460 1.10608 1.23418 1.01423 0.81175 1.02296 1.20242 0.88790 0.86575 0.96809 0.86757 0.86232 0.84784 0.89493 0.86292 0.87540 0.89039 0.79309 0.91734 0.90048 0.91730 0.92465 0.90104 0.92000 0.86272 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 14.31 28.91 0.41 -0.09 16 2 C -0.22 -1.65 9.31 -37.80 -0.35 -2.01 16 3 C 0.56 5.29 7.66 -12.66 -0.10 5.20 16 4 O -0.54 -6.60 15.66 5.27 0.08 -6.51 16 5 N -0.62 -5.09 2.97 -174.98 -0.52 -5.61 16 6 C 0.10 0.64 6.42 -3.60 -0.02 0.61 16 7 C 0.09 0.58 7.12 -3.89 -0.03 0.56 16 8 N -0.45 -4.92 3.11 -113.54 -0.35 -5.27 16 9 C 0.03 0.46 11.31 -16.78 -0.19 0.27 16 10 C -0.04 -0.71 6.95 -82.97 -0.58 -1.29 16 11 C 0.62 12.65 8.06 -12.56 -0.10 12.55 16 12 O -0.57 -12.58 17.66 5.26 0.09 -12.49 16 13 N -0.63 -13.17 3.69 -186.71 -0.69 -13.86 16 14 C 0.10 2.15 6.87 -8.64 -0.06 2.09 16 15 C -0.02 -0.41 2.99 -91.39 -0.27 -0.69 16 16 C -0.51 -13.43 9.38 -34.44 -0.32 -13.76 16 17 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 18 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 19 N -0.90 -26.09 13.96 55.43 0.77 -25.32 16 20 Si 0.87 20.46 27.42 -169.99 -4.66 15.80 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.26 -5.99 6.22 56.52 0.35 -5.64 16 24 C 0.12 2.42 8.19 -8.51 -0.07 2.35 16 25 N -0.43 -7.04 9.79 -7.10 -0.07 -7.11 16 26 C 0.18 2.23 7.76 -154.83 -1.20 1.03 16 27 C 0.20 1.71 6.61 -4.60 -0.03 1.68 16 28 H 0.11 0.78 7.49 -52.49 -0.39 0.38 16 29 H 0.12 0.45 8.06 -52.48 -0.42 0.03 16 30 H 0.13 0.77 6.05 -52.49 -0.32 0.45 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.12 0.74 7.01 -51.93 -0.36 0.38 16 33 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.19 2.07 8.06 -52.49 -0.42 1.64 16 36 H 0.06 1.35 7.46 -51.93 -0.39 0.96 16 37 H 0.08 1.73 8.10 -51.93 -0.42 1.31 16 38 H 0.06 1.51 6.50 -51.93 -0.34 1.17 16 39 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 40 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.12 0.90 5.67 -51.93 -0.29 0.61 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 362.65 15.07 5.47 5.47 Total: -1.00 -35.49 362.65 -8.39 -43.88 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.50 Total: 0.51 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: -3.01 Total: 10.52 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.86 Total: -57.17 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.18 Total: -19.00 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.66 Total: 15.80 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.49 -8.39 -43.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268862880.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.403 kcal (2) G-P(sol) polarization free energy of solvation -35.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds