Wall clock time and date at job start Tue Mar 31 2020 04:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00012 * 2 1 4 4 H 1.48501 * 109.47269 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47359 * 300.00382 * 3 2 1 6 6 H 1.48501 * 109.47104 * 60.00095 * 3 2 1 7 7 C 1.37871 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00347 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99738 * 0.27747 * 7 2 1 10 10 C 1.53956 * 113.73642 * 278.46416 * 9 7 2 11 11 N 1.47813 * 86.03113 * 222.08429 * 10 9 7 12 12 C 1.34777 * 134.45306 * 204.64640 * 11 10 9 13 13 O 1.21285 * 120.00094 * 174.66614 * 12 11 10 14 14 C 1.50706 * 120.00252 * 354.66386 * 12 11 10 15 15 C 1.52865 * 118.99398 * 79.27472 * 14 12 11 16 16 C 1.53122 * 60.43709 * 110.84991 * 15 14 12 17 17 H 1.09001 * 119.80837 * 247.84288 * 16 15 14 18 18 C 1.54700 * 117.55517 * 91.98464 * 16 15 14 19 19 C 1.54956 * 102.70322 * 319.12569 * 18 16 15 20 20 N 1.47380 * 117.18034 * 284.47939 * 14 12 11 21 21 C 1.34780 * 126.94729 * 15.70721 * 20 14 12 22 22 O 1.21577 * 119.99696 * 4.75340 * 21 20 14 23 23 C 1.47702 * 120.00089 * 184.75985 * 21 20 14 24 24 C 1.41504 * 126.51731 * 179.70847 * 23 21 20 25 25 C 1.35371 * 105.50057 * 179.90088 * 24 23 21 26 26 N 1.35027 * 107.22870 * 0.35654 * 25 24 23 27 27 H 0.97002 * 124.88554 * 179.76142 * 26 25 24 28 28 N 1.28463 * 110.23277 * 359.76599 * 26 25 24 29 29 C 1.47573 * 91.05676 * 24.55178 * 11 10 9 30 30 H 0.96996 * 119.99725 * 359.97438 * 1 2 3 31 31 H 1.08999 * 112.94665 * 50.05701 * 9 7 2 32 32 H 1.08997 * 113.76863 * 336.34472 * 10 9 7 33 33 H 1.08999 * 113.76591 * 107.75357 * 10 9 7 34 34 H 1.09009 * 117.45525 * 218.45703 * 15 14 12 35 35 H 1.08998 * 117.46384 * 3.26592 * 15 14 12 36 36 H 1.08999 * 110.76428 * 77.42874 * 18 16 15 37 37 H 1.09003 * 110.76352 * 200.63707 * 18 16 15 38 38 H 1.08999 * 110.66060 * 80.89104 * 19 18 16 39 39 H 1.09001 * 110.66526 * 203.84148 * 19 18 16 40 40 H 1.07998 * 127.25053 * 0.02562 * 24 23 21 41 41 H 1.08004 * 126.38445 * 180.08853 * 25 24 23 42 42 H 1.08997 * 113.77169 * 221.15310 * 29 11 10 43 43 H 1.08994 * 113.87354 * 89.76153 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0074 10 6 0.7558 -2.9361 1.3832 11 7 1.1917 -4.2950 0.9983 12 6 0.8423 -5.5407 1.3758 13 8 1.3151 -6.5018 0.8068 14 6 -0.1358 -5.7395 2.5049 15 6 -1.6300 -5.5717 2.2291 16 6 -1.0697 -6.9637 2.5341 17 1 -1.0550 -7.7248 1.7539 18 6 -1.0753 -7.4301 4.0091 19 6 -0.6504 -6.1505 4.7727 20 7 0.3635 -5.5216 3.8743 21 6 1.4985 -4.8885 4.2317 22 8 2.1866 -4.3508 3.3859 23 6 1.9062 -4.8482 5.6507 24 6 3.0661 -4.2312 6.1764 25 6 3.0179 -4.4483 7.5117 26 7 1.8979 -5.1602 7.7609 27 1 1.6144 -5.4591 8.6391 28 7 1.2618 -5.3849 6.6676 29 6 2.1609 -3.7403 0.0335 30 1 -0.4849 0.8400 0.0004 31 1 0.4838 -2.5427 -0.7803 32 1 1.3268 -2.5085 2.2073 33 1 -0.3219 -2.8403 1.5158 34 1 -2.2328 -5.0926 3.0007 35 1 -1.9315 -5.3657 1.2021 36 1 -2.0739 -7.7463 4.3105 37 1 -0.3544 -8.2330 4.1633 38 1 -1.5005 -5.4811 4.9045 39 1 -0.2106 -6.4060 5.7367 40 1 3.8282 -3.6975 5.6280 41 1 3.7426 -4.1178 8.2411 42 1 2.2031 -4.2853 -0.9095 43 1 3.1462 -3.5489 0.4585 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269604237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:55 Heat of formation + Delta-G solvation = 103.376122 kcal Electronic energy + Delta-G solvation = -29089.198750 eV Core-core repulsion = 25139.569360 eV Total energy + Delta-G solvation = -3949.629390 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.78647 -40.69569 -38.54602 -37.97186 -36.46663 -33.12621 -32.51671 -31.75469 -30.77535 -30.48007 -28.72900 -25.41104 -24.86540 -24.77079 -24.17697 -22.31527 -21.84329 -20.77707 -19.87937 -19.24204 -18.51182 -17.80096 -16.88524 -16.56257 -16.17352 -15.84241 -15.46469 -14.99710 -14.85883 -14.58360 -14.29357 -14.00480 -13.81884 -13.63541 -13.26235 -13.12354 -12.72156 -12.50833 -12.33793 -12.10361 -11.82861 -11.38516 -11.27822 -11.08396 -10.84813 -10.73829 -10.70848 -10.56117 -10.35578 -10.23740 -9.86558 -9.57971 -9.45383 -9.36970 -9.09750 -8.78099 -8.45943 -8.32466 -7.52385 -6.05400 -4.08645 1.47033 2.01274 2.47145 2.81829 3.26405 3.30741 3.38838 3.43728 3.54491 3.72696 3.83909 4.27102 4.44149 4.49811 4.62021 4.66396 4.88177 4.96372 5.02344 5.13133 5.26661 5.38274 5.47984 5.57673 5.67548 5.69614 5.76907 5.84162 6.01940 6.13098 6.18745 6.29053 6.37870 6.44905 6.56535 6.60355 6.77603 6.87465 6.96309 7.05741 7.52375 7.66686 7.72721 7.93713 8.31102 8.34966 8.74020 8.93816 8.98415 9.56577 11.04772 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.011032 B = 0.004485 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.466769 B = 6241.411492 C = 7810.141911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.893 3.107 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.063 0.937 9 C 0.030 3.970 10 C 0.122 3.878 11 N -0.606 5.606 12 C 0.573 3.427 13 O -0.566 6.566 14 C 0.073 3.927 15 C -0.142 4.142 16 C -0.148 4.148 17 H 0.127 0.873 18 C -0.103 4.103 19 C 0.091 3.909 20 N -0.574 5.574 21 C 0.610 3.390 22 O -0.491 6.491 23 C 0.004 3.996 24 C -0.175 4.175 25 C -0.015 4.015 26 N -0.387 5.387 27 H 0.445 0.555 28 N -0.264 5.264 29 C 0.109 3.891 30 H 0.261 0.739 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.165 0.835 41 H 0.185 0.815 42 H 0.057 0.943 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.172 -11.411 18.013 21.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.011 3.989 10 C -0.001 4.001 11 N -0.336 5.336 12 C 0.359 3.641 13 O -0.447 6.447 14 C -0.017 4.017 15 C -0.180 4.180 16 C -0.168 4.168 17 H 0.145 0.855 18 C -0.141 4.141 19 C -0.031 4.031 20 N -0.309 5.309 21 C 0.396 3.604 22 O -0.362 6.362 23 C -0.157 4.157 24 C -0.203 4.203 25 C -0.160 4.160 26 N -0.101 5.101 27 H 0.289 0.711 28 N -0.101 5.101 29 C -0.012 4.012 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.122 0.878 35 H 0.132 0.868 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.130 0.870 40 H 0.183 0.817 41 H 0.202 0.798 42 H 0.075 0.925 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.518 -12.174 17.560 21.515 hybrid contribution 0.908 1.323 0.649 1.731 sum -1.610 -10.852 18.209 21.258 Atomic orbital electron populations 1.69968 1.05995 1.26682 1.50063 1.24998 0.94836 0.99207 0.94596 0.86518 0.80302 0.83575 0.77521 1.19585 1.21005 1.21049 1.21018 0.93072 0.89712 1.51009 0.91904 1.20532 0.94123 0.91451 0.92823 1.23605 0.98355 0.76534 1.01569 1.50149 1.38822 1.04478 1.40186 1.18395 0.81287 0.82412 0.81982 1.90618 1.57027 1.40264 1.56748 1.21299 0.91176 1.05104 0.84132 1.23436 0.93282 0.97338 1.03980 1.23714 1.02698 0.91717 0.98669 0.85463 1.22277 1.02186 0.97307 0.92325 1.23102 0.91240 0.93511 0.95226 1.48128 1.21436 1.56043 1.05278 1.16591 0.79888 0.78328 0.85600 1.90973 1.52223 1.43263 1.49715 1.21868 0.96750 1.04252 0.92815 1.21870 0.99974 1.05283 0.93125 1.22933 0.93327 1.01595 0.98114 1.43393 1.17503 1.40371 1.08797 0.71136 1.73455 1.22523 1.21673 0.92454 1.23426 0.94139 0.93387 0.90295 0.92939 0.92129 0.90405 0.92764 0.87833 0.86770 0.89541 0.90028 0.90863 0.87021 0.81701 0.79756 0.92471 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 13.29 55.43 0.74 -24.43 16 2 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -13.86 8.77 -34.44 -0.30 -14.16 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.03 0.76 3.60 -90.84 -0.33 0.43 16 10 C 0.12 2.92 7.38 -2.83 -0.02 2.90 16 11 N -0.61 -14.14 2.49 -178.23 -0.44 -14.58 16 12 C 0.57 12.91 6.30 -10.98 -0.07 12.85 16 13 O -0.57 -14.20 17.68 5.55 0.10 -14.10 16 14 C 0.07 1.30 2.97 -132.03 -0.39 0.90 16 15 C -0.14 -2.04 9.62 -26.74 -0.26 -2.30 16 16 C -0.15 -2.05 6.93 -89.14 -0.62 -2.67 16 17 H 0.13 1.77 8.14 -51.93 -0.42 1.35 16 18 C -0.10 -1.10 7.03 -24.80 -0.17 -1.28 16 19 C 0.09 1.09 6.36 -1.43 -0.01 1.08 16 20 N -0.57 -9.55 3.34 -156.62 -0.52 -10.08 16 21 C 0.61 11.22 7.83 -12.39 -0.10 11.13 16 22 O -0.49 -10.85 12.83 5.30 0.07 -10.79 16 23 C 0.00 0.06 7.01 -82.77 -0.58 -0.52 16 24 C -0.17 -2.17 10.81 -39.36 -0.43 -2.59 16 25 C -0.02 -0.12 12.02 -17.17 -0.21 -0.33 16 26 N -0.39 -2.98 6.83 30.47 0.21 -2.77 16 27 H 0.44 1.50 8.96 -190.44 -1.71 -0.21 16 28 N -0.26 -3.06 9.27 33.42 0.31 -2.75 16 29 C 0.11 2.58 8.40 -2.97 -0.02 2.56 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 32 H 0.08 1.99 7.04 -51.93 -0.37 1.62 16 33 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.10 1.29 7.14 -51.92 -0.37 0.92 16 35 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.80 7.28 -51.93 -0.38 0.42 16 39 H 0.11 1.24 5.44 -51.93 -0.28 0.95 16 40 H 0.17 2.05 8.06 -52.49 -0.42 1.62 16 41 H 0.19 0.70 8.06 -52.48 -0.42 0.27 16 42 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.07 1.78 8.09 -51.93 -0.42 1.36 16 LS Contribution 360.23 15.07 5.43 5.43 Total: -1.00 -35.98 360.23 -9.61 -45.60 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.87 Total: 2.76 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: -3.60 Total: 9.71 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.29 Total: -54.62 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: 0.17 Total: -24.88 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.98 -9.61 -45.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269604237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.974 kcal (2) G-P(sol) polarization free energy of solvation -35.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds