Wall clock time and date at job start Tue Mar 31 2020 05:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20763 * 119.99937 * 2 1 4 4 C 1.50702 * 119.99878 * 180.28365 * 2 1 3 5 5 H 1.08999 * 109.47384 * 44.72009 * 4 2 1 6 6 C 1.53001 * 109.46902 * 284.71925 * 4 2 1 7 7 N 1.46499 * 109.47151 * 164.72062 * 4 2 1 8 8 C 1.46605 * 124.28813 * 239.72672 * 7 4 2 9 9 C 1.54181 * 105.88629 * 163.67494 * 8 7 4 10 10 F 1.39902 * 114.01380 * 146.44213 * 9 8 7 11 11 C 1.54604 * 109.53543 * 274.76530 * 9 8 7 12 12 N 1.48529 * 103.26517 * 145.85866 * 11 9 8 13 13 C 1.46902 * 110.99653 * 199.99873 * 12 11 9 14 14 C 1.53005 * 109.47100 * 187.30037 * 13 12 11 15 15 C 1.50701 * 109.47137 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99770 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99898 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99856 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99850 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47067 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.46829 * 119.99708 * 19 17 15 22 22 H 1.48496 * 109.46688 * 239.99741 * 19 17 15 23 23 C 1.47818 * 105.84818 * 320.52760 * 12 11 9 24 24 C 1.54080 * 107.27556 * 25.21252 * 23 12 11 25 25 F 1.39892 * 112.61977 * 122.65848 * 24 23 12 26 26 C 1.34186 * 124.29030 * 60.02379 * 7 4 2 27 27 O 1.21278 * 124.68889 * 1.63216 * 26 7 4 28 28 H 1.09004 * 109.46986 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47178 * 119.99485 * 1 2 3 30 30 H 1.09006 * 109.46629 * 239.99681 * 1 2 3 31 31 H 1.09003 * 109.46967 * 180.02562 * 6 4 2 32 32 H 1.08999 * 109.47170 * 300.00216 * 6 4 2 33 33 H 1.09003 * 109.46946 * 60.00092 * 6 4 2 34 34 H 1.08999 * 110.15070 * 282.92539 * 8 7 4 35 35 H 1.08990 * 110.15369 * 44.67956 * 8 7 4 36 36 H 1.08993 * 110.66099 * 27.41696 * 11 9 8 37 37 H 1.08995 * 110.80320 * 264.36705 * 11 9 8 38 38 H 1.09002 * 109.47427 * 307.30292 * 13 12 11 39 39 H 1.09004 * 109.46951 * 67.30458 * 13 12 11 40 40 H 1.09002 * 109.47190 * 300.00401 * 14 13 12 41 41 H 1.09004 * 109.46874 * 60.00374 * 14 13 12 42 42 H 0.96999 * 119.99463 * 180.02562 * 18 17 15 43 43 H 1.08993 * 109.88469 * 265.78961 * 23 12 11 44 44 H 1.09001 * 110.01092 * 144.70085 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0065 5 1 1.8098 -1.9813 -0.7329 6 6 2.1980 -1.9369 1.3856 7 7 3.6585 -1.0601 -0.3692 8 6 4.3258 -1.6518 -1.5329 9 6 5.6026 -0.8171 -1.7569 10 9 6.6857 -1.5540 -2.2480 11 6 5.2647 0.4247 -2.6137 12 7 6.1766 1.4672 -2.0773 13 6 5.6966 2.8129 -2.4192 14 6 6.7474 3.8479 -2.0120 15 6 6.2547 5.2284 -2.3621 16 1 5.2890 5.3548 -2.8288 17 6 7.0373 6.3298 -2.0877 18 7 8.2135 6.1757 -1.5199 19 14 6.4263 8.0411 -2.5211 20 1 5.0827 7.9435 -3.1458 21 1 6.3406 8.8632 -1.2873 22 1 7.3703 8.6768 -3.4750 23 6 6.1991 1.2691 -0.6126 24 6 5.8469 -0.2069 -0.3451 25 9 6.8387 -0.8734 0.3823 26 6 4.4923 -0.2701 0.3246 27 8 4.2001 0.3123 1.3474 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5137 -0.8900 30 1 -0.3633 -0.5139 0.8900 31 1 2.7434 -2.8807 1.3811 32 1 2.6487 -1.2607 2.1121 33 1 1.1578 -2.1192 1.6555 34 1 4.5842 -2.6909 -1.3293 35 1 3.6795 -1.5894 -2.4082 36 1 4.2237 0.7161 -2.4748 37 1 5.4730 0.2366 -3.6669 38 1 5.5229 2.8747 -3.4935 39 1 4.7656 3.0122 -1.8885 40 1 6.9211 3.7861 -0.9377 41 1 7.6784 3.6485 -2.5427 42 1 8.7639 6.9506 -1.3265 43 1 5.4620 1.9177 -0.1394 44 1 7.1923 1.4899 -0.2215 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274037913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:18 Heat of formation + Delta-G solvation = -137.449739 kcal Electronic energy + Delta-G solvation = -30380.809272 eV Core-core repulsion = 25970.047702 eV Total energy + Delta-G solvation = -4410.761569 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.154 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.39083 -47.40366 -41.31576 -39.38184 -37.77550 -36.48907 -34.10393 -32.96760 -31.14265 -29.90369 -29.52921 -28.36473 -26.18712 -25.40882 -24.16960 -22.27592 -21.50126 -20.97239 -19.96152 -19.21098 -17.89263 -17.03980 -16.67704 -16.37944 -16.13298 -15.93555 -15.55024 -15.47345 -15.20421 -14.94158 -14.57355 -14.41457 -14.33117 -14.18430 -13.89230 -13.69514 -13.20276 -13.16655 -13.05008 -12.88502 -12.68879 -12.63220 -12.40800 -12.25888 -12.16113 -11.92421 -11.89645 -11.30827 -11.11162 -10.91479 -10.67404 -10.50918 -10.19322 -9.92628 -9.80815 -9.44177 -9.13207 -9.09022 -8.33170 -8.12011 -5.97140 -4.00033 1.64155 2.16746 2.19902 3.33389 3.33749 3.40691 3.43410 3.44714 3.55697 3.67434 4.01214 4.20833 4.33716 4.45279 4.49455 4.51236 4.58021 4.65220 4.86981 4.93796 4.96775 4.99283 5.10491 5.20663 5.25198 5.39069 5.51019 5.52842 5.67242 5.73800 5.83964 5.93860 6.00134 6.21713 6.28691 6.52343 6.82331 7.10547 7.19276 7.20191 7.73435 7.75186 7.85908 8.06287 8.42539 9.06622 9.63685 11.14326 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013305 B = 0.003878 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.999908 B = 7217.560099 C = 8351.499810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.329 3.671 3 O -0.417 6.417 4 C 0.111 3.889 5 H 0.122 0.878 6 C -0.163 4.163 7 N -0.608 5.608 8 C 0.091 3.909 9 C 0.093 3.907 10 F -0.157 7.157 11 C 0.021 3.979 12 N -0.503 5.503 13 C 0.053 3.947 14 C 0.028 3.972 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.059 3.941 18 N -0.891 5.891 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.033 3.967 24 C 0.064 3.936 25 F -0.159 7.159 26 C 0.523 3.477 27 O -0.476 6.476 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.030 0.970 40 H 0.017 0.983 41 H 0.028 0.972 42 H 0.260 0.740 43 H 0.078 0.922 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.915 -22.584 0.709 27.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.200 3.800 3 O -0.286 6.286 4 C 0.008 3.992 5 H 0.139 0.861 6 C -0.221 4.221 7 N -0.344 5.344 8 C -0.033 4.033 9 C 0.073 3.927 10 F -0.137 7.137 11 C -0.107 4.107 12 N -0.227 5.227 13 C -0.073 4.073 14 C -0.009 4.009 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.095 4.095 24 C 0.041 3.959 25 F -0.139 7.139 26 C 0.307 3.693 27 O -0.346 6.346 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.125 0.875 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.096 0.904 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.086 -21.643 1.147 26.407 hybrid contribution -0.891 0.772 0.101 1.183 sum -15.977 -20.871 1.248 26.314 Atomic orbital electron populations 1.22280 0.93257 1.05574 1.04449 1.24989 0.92355 0.90243 0.72387 1.90558 1.71530 1.34223 1.32329 1.21554 0.80280 0.97311 1.00083 0.86064 1.22095 1.03474 1.01821 0.94703 1.47876 1.10572 1.48088 1.27841 1.22472 0.93199 0.97963 0.89661 1.22497 0.84824 0.92039 0.93311 1.92932 1.54923 1.77567 1.88301 1.23751 0.97107 0.89450 1.00431 1.65081 1.45894 1.04825 1.06926 1.22634 0.98627 0.85833 1.00230 1.19079 0.93671 0.91127 0.97053 1.21176 1.03371 0.91312 1.40272 0.92703 1.24986 0.94884 0.99191 0.95175 1.69984 1.10480 1.30101 1.42456 0.86532 0.78821 0.84513 0.78109 1.19786 1.20998 1.20960 1.23357 1.05273 0.89570 0.91347 1.22764 0.86188 0.96307 0.90677 1.92934 1.61326 1.81364 1.78315 1.20384 0.86046 0.78533 0.84360 1.90753 1.78381 1.43323 1.22152 0.89503 0.88870 0.88842 0.90838 0.90340 0.90293 0.88831 0.88047 0.91458 0.87518 0.91265 0.95147 0.96441 0.95409 0.93000 0.90369 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.11 10.25 36.01 0.37 -0.74 16 2 C 0.33 3.30 6.40 -29.03 -0.19 3.11 16 3 O -0.42 -6.65 15.01 -14.25 -0.21 -6.86 16 4 C 0.11 0.87 3.20 -69.08 -0.22 0.65 16 5 H 0.12 0.42 8.07 -51.93 -0.42 0.00 16 6 C -0.16 -1.16 9.17 37.16 0.34 -0.81 16 7 N -0.61 -6.73 2.72 -166.56 -0.45 -7.19 16 8 C 0.09 0.80 6.49 -3.37 -0.02 0.78 16 9 C 0.09 1.23 1.93 -87.70 -0.17 1.06 16 10 F -0.16 -2.23 17.11 2.25 0.04 -2.19 16 11 C 0.02 0.30 5.68 -2.08 -0.01 0.29 16 12 N -0.50 -9.49 5.26 -230.69 -1.21 -10.70 16 13 C 0.05 1.15 4.70 -3.82 -0.02 1.13 16 14 C 0.03 0.75 5.03 -27.88 -0.14 0.61 16 15 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 16 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -27.44 13.29 55.43 0.74 -26.71 16 19 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 C 0.03 0.63 5.27 -2.76 -0.01 0.62 16 24 C 0.06 1.04 1.80 -89.49 -0.16 0.88 16 25 F -0.16 -2.73 16.97 2.25 0.04 -2.69 16 26 C 0.52 8.22 5.52 -10.98 -0.06 8.16 16 27 O -0.48 -9.00 14.55 -14.69 -0.21 -9.22 16 28 H 0.09 0.60 8.12 -51.93 -0.42 0.18 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.33 7.92 -51.93 -0.41 -0.08 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.84 6.72 -51.93 -0.35 0.50 16 33 H 0.08 0.32 7.92 -51.93 -0.41 -0.09 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.59 7.94 -51.93 -0.41 0.17 16 36 H 0.07 0.92 7.77 -51.93 -0.40 0.52 16 37 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.07 1.42 8.11 -51.93 -0.42 1.00 16 39 H 0.03 0.67 7.81 -51.93 -0.41 0.27 16 40 H 0.02 0.50 7.52 -51.93 -0.39 0.11 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.08 1.64 6.83 -51.93 -0.35 1.29 16 44 H 0.11 2.18 8.09 -51.93 -0.42 1.76 16 LS Contribution 365.33 15.07 5.51 5.51 Total: -1.00 -37.04 365.33 -7.98 -45.02 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -6.47 Total: -3.99 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -0.71 Total: 1.91 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: -0.93 Total: -44.59 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.43 Total: -16.08 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.08 Total: -4.88 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.04 -7.98 -45.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274037913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.434 kcal (2) G-P(sol) polarization free energy of solvation -37.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds