Wall clock time and date at job start Tue Mar 31 2020 04:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00105 * 2 1 4 4 H 1.48496 * 109.46768 * 269.99622 * 3 2 1 5 5 H 1.48497 * 109.47059 * 29.99924 * 3 2 1 6 6 H 1.48497 * 109.47115 * 149.99599 * 3 2 1 7 7 C 1.37882 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00125 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99866 * 359.97438 * 7 2 1 10 10 C 1.53497 * 114.20586 * 179.97438 * 9 7 2 11 11 N 1.47062 * 87.98721 * 220.15087 * 10 9 7 12 12 C 1.34776 * 136.05869 * 207.08189 * 11 10 9 13 13 O 1.21283 * 120.00130 * 0.02562 * 12 11 10 14 14 C 1.50702 * 120.00212 * 180.02562 * 12 11 10 15 15 H 1.09009 * 115.56115 * 325.78746 * 14 12 11 16 16 C 1.53203 * 117.56803 * 111.63272 * 14 12 11 17 17 C 1.52092 * 117.52563 * 180.02562 * 14 12 11 18 18 C 1.52617 * 129.80285 * 11.59302 * 17 14 12 19 19 N 1.47251 * 87.69326 * 113.63714 * 18 17 14 20 20 C 1.34769 * 135.90051 * 206.22379 * 19 18 17 21 21 O 1.21599 * 120.00074 * 0.02562 * 20 19 18 22 22 C 1.47406 * 120.00014 * 180.02562 * 20 19 18 23 23 N 1.31621 * 125.86719 * 0.31501 * 22 20 19 24 24 C 1.33096 * 109.09881 * 180.16910 * 23 22 20 25 25 C 1.35571 * 108.34810 * 359.56306 * 24 23 22 26 26 N 1.35396 * 107.15829 * 0.26655 * 25 24 23 27 27 H 0.97006 * 126.43665 * 179.97438 * 26 25 24 28 28 C 1.47255 * 88.19716 * 26.48923 * 19 18 17 29 29 C 1.47072 * 87.88702 * 27.34722 * 11 10 9 30 30 H 0.96992 * 119.99675 * 0.02562 * 1 2 3 31 31 H 1.08999 * 113.28329 * 313.07406 * 9 7 2 32 32 H 1.09003 * 113.46423 * 105.37121 * 10 9 7 33 33 H 1.08998 * 113.52012 * 334.94553 * 10 9 7 34 34 H 1.09000 * 117.52470 * 359.97438 * 16 14 12 35 35 H 1.09002 * 117.52717 * 214.82036 * 16 14 12 36 36 H 1.08993 * 113.51743 * 358.93037 * 18 17 14 37 37 H 1.09006 * 113.57247 * 228.35084 * 18 17 14 38 38 H 1.08002 * 125.82867 * 179.83267 * 24 23 22 39 39 H 1.08004 * 126.41506 * 180.22589 * 25 24 23 40 40 H 1.08999 * 113.52262 * 88.21871 * 28 19 18 41 41 H 1.09001 * 113.51108 * 218.80356 * 28 19 18 42 42 H 1.08997 * 113.46875 * 87.43186 * 29 11 10 43 43 H 1.09004 * 113.46770 * 217.88271 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.1488 -3.7442 0.0016 11 7 1.2066 -4.3598 -0.9451 12 6 0.8310 -5.6145 -1.2630 13 8 1.3277 -6.5601 -0.6885 14 6 -0.2060 -5.8425 -2.3324 15 1 -0.9901 -5.0879 -2.3957 16 6 0.2548 -6.4959 -3.6392 17 6 -0.5883 -7.2809 -2.6455 18 6 -0.2630 -8.5653 -1.8880 19 7 -1.7009 -8.6861 -1.5948 20 6 -2.4470 -9.2582 -0.6293 21 8 -1.9075 -9.8532 0.2838 22 6 -3.9171 -9.1628 -0.6800 23 7 -4.6188 -8.5552 -1.6132 24 6 -5.9139 -8.6704 -1.3287 25 6 -6.0372 -9.3828 -0.1819 26 7 -4.7860 -9.6952 0.2307 27 1 -4.5506 -10.2015 1.0240 28 6 -1.9682 -7.9148 -2.8204 29 6 0.8595 -3.0039 -1.3970 30 1 -0.4849 0.8400 -0.0004 31 1 0.4437 -2.5299 0.7334 32 1 2.1884 -4.2509 0.9659 33 1 3.1373 -3.5677 -0.4225 34 1 1.3087 -6.7606 -3.7258 35 1 -0.2262 -6.1711 -4.5619 36 1 0.3497 -8.4038 -1.0012 37 1 0.1193 -9.3625 -2.5256 38 1 -6.7279 -8.2688 -1.9140 39 1 -6.9604 -9.6504 0.3105 40 1 -2.0527 -8.5333 -3.7139 41 1 -2.7901 -7.2062 -2.7176 42 1 1.5078 -2.6314 -2.1900 43 1 -0.1994 -2.8799 -1.6241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275513296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:10 Heat of formation + Delta-G solvation = 106.474876 kcal Electronic energy + Delta-G solvation = -27320.373960 eV Core-core repulsion = 23370.878942 eV Total energy + Delta-G solvation = -3949.495018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.46405 -40.74011 -39.31416 -38.21973 -36.91231 -34.57689 -32.98375 -32.69854 -30.50036 -29.36772 -27.91849 -26.15483 -25.57009 -24.97578 -23.35529 -23.12136 -21.82190 -20.58360 -20.22551 -19.14026 -18.25804 -17.93408 -16.93770 -16.72925 -16.47440 -16.14347 -15.76148 -15.19789 -15.06892 -14.84183 -14.45371 -14.36619 -14.09546 -14.00897 -13.58941 -13.35167 -13.11874 -12.87430 -12.41068 -12.20958 -11.92070 -11.53466 -11.34666 -10.98579 -10.92414 -10.82599 -10.74378 -10.57358 -10.47870 -10.40294 -10.34092 -10.02663 -9.57043 -9.22732 -9.05911 -8.94349 -8.69302 -8.59420 -7.87333 -6.19623 -4.25332 1.12840 2.17862 2.35963 2.87835 3.09058 3.22362 3.22746 3.30417 3.32560 3.38874 3.86214 3.99051 4.17060 4.32419 4.42665 4.58632 4.83053 4.88460 5.06147 5.08356 5.18124 5.19762 5.33142 5.45601 5.54722 5.56230 5.66435 5.77246 5.80179 5.92038 6.05207 6.06329 6.18974 6.25524 6.27822 6.43604 6.56255 6.65151 6.80248 6.80378 7.45128 7.51452 7.54325 7.78189 7.94613 8.16559 8.50956 8.74976 8.78909 9.41579 10.90111 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015466 B = 0.002564 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.014792 B =10919.877526 C =11718.144213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.517 4.517 8 H 0.064 0.936 9 C 0.035 3.965 10 C 0.100 3.900 11 N -0.638 5.638 12 C 0.560 3.440 13 O -0.561 6.561 14 C -0.138 4.138 15 H 0.127 0.873 16 C -0.117 4.117 17 C -0.159 4.159 18 C 0.144 3.856 19 N -0.619 5.619 20 C 0.634 3.366 21 O -0.542 6.542 22 C 0.153 3.847 23 N -0.439 5.439 24 C -0.029 4.029 25 C -0.026 4.026 26 N -0.526 5.526 27 H 0.430 0.570 28 C 0.153 3.847 29 C 0.099 3.901 30 H 0.264 0.736 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.179 0.821 39 H 0.187 0.813 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.666 -16.290 -7.494 20.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.015 3.985 10 C -0.022 4.022 11 N -0.371 5.371 12 C 0.349 3.651 13 O -0.442 6.442 14 C -0.159 4.159 15 H 0.145 0.855 16 C -0.155 4.155 17 C -0.160 4.160 18 C 0.023 3.977 19 N -0.352 5.352 20 C 0.421 3.579 21 O -0.419 6.419 22 C -0.108 4.108 23 N -0.161 5.161 24 C -0.182 4.182 25 C -0.165 4.165 26 N -0.127 5.127 27 H 0.270 0.730 28 C 0.030 3.970 29 C -0.024 4.024 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.109 0.891 38 H 0.196 0.804 39 H 0.204 0.796 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.093 0.907 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.085 -16.887 -7.252 20.963 hybrid contribution -0.202 0.395 0.938 1.038 sum -10.287 -16.492 -6.313 20.437 Atomic orbital electron populations 1.69951 1.06076 1.27149 1.49046 1.25034 0.94865 0.99409 0.94223 0.86533 0.79916 0.82978 0.78255 1.20481 1.21136 1.19695 1.20907 0.93015 0.89538 1.52085 0.91819 1.20395 0.94736 0.91134 0.92200 1.23351 0.94255 0.93092 0.91459 1.49939 1.42220 1.04800 1.40097 1.19038 0.82231 0.81284 0.82527 1.90584 1.58038 1.40857 1.54688 1.21979 1.01142 0.95178 0.97591 0.85508 1.22781 1.00454 0.99995 0.92307 1.21964 0.97993 0.92450 1.03604 1.22630 0.81495 0.93193 1.00403 1.48892 1.09704 1.53154 1.23431 1.15739 0.82342 0.78359 0.81458 1.90856 1.72526 1.43827 1.34671 1.22538 0.92844 1.04366 0.91064 1.70265 1.04313 1.17727 1.23833 1.22549 0.94042 1.04113 0.97515 1.23004 0.88329 1.04996 1.00166 1.42960 1.06294 1.41004 1.22488 0.73035 1.22548 0.95447 0.92473 0.86531 1.23673 0.99809 0.76772 1.02097 0.92617 0.91397 0.92502 0.90819 0.87666 0.87013 0.87188 0.89119 0.80367 0.79606 0.88654 0.88751 0.90656 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.94 13.26 55.43 0.74 -23.20 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 19.90 29.54 -169.99 -5.02 14.87 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.52 -13.05 8.83 -34.44 -0.30 -13.36 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.03 0.81 3.79 -91.12 -0.35 0.46 16 10 C 0.10 2.10 8.17 -8.50 -0.07 2.03 16 11 N -0.64 -12.90 3.69 -185.03 -0.68 -13.58 16 12 C 0.56 10.79 7.87 -10.98 -0.09 10.70 16 13 O -0.56 -12.19 15.03 5.55 0.08 -12.11 16 14 C -0.14 -2.03 6.02 -92.13 -0.55 -2.59 16 15 H 0.13 1.79 8.14 -51.92 -0.42 1.37 16 16 C -0.12 -1.28 10.24 -27.07 -0.28 -1.56 16 17 C -0.16 -1.99 3.15 -155.69 -0.49 -2.49 16 18 C 0.14 2.00 8.20 -7.63 -0.06 1.94 16 19 N -0.62 -8.86 3.69 -185.64 -0.68 -9.55 16 20 C 0.63 9.90 8.06 -12.53 -0.10 9.80 16 21 O -0.54 -9.87 17.86 5.28 0.09 -9.78 16 22 C 0.15 2.01 7.93 -154.52 -1.22 0.79 16 23 N -0.44 -5.45 9.70 -11.26 -0.11 -5.55 16 24 C -0.03 -0.27 11.85 -17.96 -0.21 -0.48 16 25 C -0.03 -0.19 12.00 -16.93 -0.20 -0.39 16 26 N -0.53 -5.11 6.14 -10.78 -0.07 -5.18 16 27 H 0.43 3.33 8.96 -40.82 -0.37 2.96 16 28 C 0.15 1.72 7.76 -7.50 -0.06 1.66 16 29 C 0.10 2.04 8.00 -8.36 -0.07 1.97 16 30 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.07 1.75 8.11 -51.93 -0.42 1.33 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.11 1.93 5.98 -51.93 -0.31 1.62 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.18 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.19 0.60 8.06 -52.48 -0.42 0.18 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 1.10 7.49 -51.93 -0.39 0.71 16 42 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 373.54 15.07 5.63 5.63 Total: -1.00 -33.28 373.54 -9.85 -43.13 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.68 Total: 5.15 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: -4.15 Total: 10.15 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.81 Total: -57.06 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: 0.18 Total: -21.88 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.28 -9.85 -43.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275513296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.609 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds