Wall clock time and date at job start Tue Mar 31 2020 04:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00232 * 2 1 4 4 H 1.48505 * 109.47099 * 240.00031 * 3 2 1 5 5 H 1.48500 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47582 * 119.99498 * 3 2 1 7 7 C 1.37878 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00113 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99722 * 0.02562 * 7 2 1 10 10 C 1.53947 * 113.73968 * 179.97438 * 9 7 2 11 11 N 1.47584 * 86.11565 * 222.04272 * 10 9 7 12 12 C 1.34769 * 134.49063 * 204.63541 * 11 10 9 13 13 O 1.21281 * 120.00474 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.54891 * 129.08893 * 299.93972 * 14 12 11 16 16 C 1.57167 * 77.91549 * 180.16406 * 15 14 12 17 17 N 1.46500 * 129.24970 * 179.19880 * 16 15 14 18 18 C 1.34780 * 120.00390 * 61.28673 * 17 16 15 19 19 O 1.21602 * 119.99611 * 359.97438 * 18 17 16 20 20 C 1.47406 * 120.00192 * 180.02562 * 18 17 16 21 21 N 1.31609 * 125.86463 * 359.68579 * 20 18 17 22 22 C 1.33103 * 109.09877 * 179.83826 * 21 20 18 23 23 C 1.35564 * 108.34487 * 0.43125 * 22 21 20 24 24 N 1.35401 * 107.16330 * 359.73875 * 23 22 21 25 25 H 0.97002 * 126.44433 * 180.02562 * 24 23 22 26 26 C 1.54412 * 83.73370 * 42.47561 * 16 15 14 27 27 C 1.54885 * 129.09037 * 60.06677 * 14 12 11 28 28 C 1.47577 * 91.01296 * 24.63911 * 11 10 9 29 29 H 0.97000 * 119.99858 * 0.02562 * 1 2 3 30 30 H 1.08997 * 113.01667 * 311.65275 * 9 7 2 31 31 H 1.09001 * 113.76955 * 336.34307 * 10 9 7 32 32 H 1.08997 * 113.77064 * 107.74383 * 10 9 7 33 33 H 1.09001 * 114.98080 * 291.95801 * 15 14 12 34 34 H 1.09003 * 114.97457 * 67.13363 * 15 14 12 35 35 H 0.97004 * 119.99994 * 241.28196 * 17 16 15 36 36 H 1.07995 * 125.82641 * 180.14250 * 22 21 20 37 37 H 1.08004 * 126.42099 * 179.78294 * 23 22 21 38 38 H 1.08992 * 114.93459 * 205.06231 * 26 16 15 39 39 H 1.08998 * 114.98218 * 70.02770 * 26 16 15 40 40 H 1.09008 * 114.97367 * 292.86602 * 27 14 12 41 41 H 1.08998 * 114.98354 * 68.03524 * 27 14 12 42 42 H 1.08995 * 113.76947 * 221.05456 * 28 11 10 43 43 H 1.09005 * 113.76708 * 89.66367 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.1614 -3.7405 0.0005 11 7 1.2205 -4.3066 -0.9855 12 6 0.8822 -5.5566 -1.3586 13 8 1.4092 -6.5115 -0.8281 14 6 -0.1511 -5.7681 -2.4351 15 6 -1.6346 -5.3237 -2.4657 16 6 -1.4825 -6.0579 -3.8470 17 7 -2.4846 -6.2852 -4.8912 18 6 -3.0691 -5.2367 -5.5040 19 8 -2.7651 -4.1020 -5.1898 20 6 -4.0779 -5.4655 -6.5542 21 7 -4.4885 -6.6388 -6.9864 22 6 -5.4053 -6.4573 -7.9342 23 6 -5.5742 -5.1244 -8.1148 24 7 -4.7429 -4.4956 -7.2505 25 1 -4.6391 -3.5369 -7.1451 26 6 -0.6905 -7.0923 -3.0181 27 6 -0.1340 -5.2986 -3.9110 28 6 0.7991 -2.9540 -1.3990 29 1 -0.4850 0.8401 -0.0004 30 1 0.4602 -2.5346 0.7498 31 1 3.1580 -3.5544 -0.3997 32 1 2.1761 -4.2746 0.9506 33 1 -2.2818 -5.8304 -1.7498 34 1 -1.7912 -4.2461 -2.5160 35 1 -2.7273 -7.1904 -5.1416 36 1 -5.9226 -7.2385 -8.4712 37 1 -6.2465 -4.6524 -8.8160 38 1 0.0364 -7.6750 -3.5839 39 1 -1.2905 -7.6869 -2.3293 40 1 -0.1970 -4.2195 -4.0514 41 1 0.6143 -5.7819 -4.5391 42 1 -0.2738 -2.8602 -1.5663 43 1 1.3956 -2.5369 -2.2104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275513380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:23 Heat of formation + Delta-G solvation = 127.142139 kcal Electronic energy + Delta-G solvation = -27404.927935 eV Core-core repulsion = 23456.329117 eV Total energy + Delta-G solvation = -3948.598818 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.61629 -42.05114 -39.23821 -38.76241 -36.76771 -34.26101 -32.91952 -32.65577 -30.17849 -29.31124 -26.11453 -25.76628 -25.65638 -25.06041 -24.80802 -23.22594 -21.96447 -21.13023 -20.05699 -19.32569 -18.83573 -17.82734 -16.94157 -16.73748 -16.51983 -15.98971 -15.71667 -14.96777 -14.73839 -14.55633 -14.46043 -14.34067 -14.17301 -14.09876 -14.06894 -13.58570 -13.22278 -12.33153 -12.04915 -11.84726 -11.59841 -11.45009 -11.23256 -11.14355 -10.96046 -10.81120 -10.76354 -10.69924 -10.67670 -10.46794 -10.41994 -10.16467 -9.64333 -9.29772 -9.27982 -8.98317 -8.96672 -8.57525 -7.86009 -6.16480 -4.22232 0.98657 2.09442 2.21364 2.94594 3.02038 3.06715 3.26273 3.31732 3.33482 3.50312 3.85947 4.13670 4.33889 4.35417 4.37971 4.41663 4.60235 4.69327 4.81332 4.94245 5.00024 5.14420 5.50844 5.56169 5.62067 5.67684 5.79400 5.90754 5.98742 6.04040 6.10834 6.11825 6.21140 6.29030 6.38847 6.39741 6.61193 6.68591 6.70630 6.84226 7.06265 7.42419 7.56142 7.80773 7.84051 8.17881 8.47800 8.75655 8.80926 9.44451 10.93050 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.002836 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.473460 B = 9870.203007 C =11741.528425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.063 0.937 9 C 0.034 3.966 10 C 0.104 3.896 11 N -0.631 5.631 12 C 0.589 3.411 13 O -0.559 6.559 14 C -0.141 4.141 15 C -0.099 4.099 16 C 0.090 3.910 17 N -0.651 5.651 18 C 0.608 3.392 19 O -0.521 6.521 20 C 0.147 3.853 21 N -0.444 5.444 22 C -0.028 4.028 23 C -0.022 4.022 24 N -0.523 5.523 25 H 0.433 0.567 26 C -0.079 4.079 27 C -0.096 4.096 28 C 0.105 3.895 29 H 0.264 0.736 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.418 0.582 36 H 0.180 0.820 37 H 0.188 0.812 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.275 -10.763 -15.972 22.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.558 4.558 8 H 0.081 0.919 9 C 0.015 3.985 10 C -0.017 4.017 11 N -0.363 5.363 12 C 0.377 3.623 13 O -0.440 6.440 14 C -0.145 4.145 15 C -0.138 4.138 16 C 0.002 3.998 17 N -0.300 5.300 18 C 0.392 3.608 19 O -0.394 6.394 20 C -0.114 4.114 21 N -0.167 5.167 22 C -0.181 4.181 23 C -0.162 4.162 24 N -0.124 5.124 25 H 0.272 0.728 26 C -0.118 4.118 27 C -0.135 4.135 28 C -0.017 4.017 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.256 0.744 36 H 0.197 0.803 37 H 0.205 0.795 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.692 -11.257 -15.208 21.733 hybrid contribution -0.214 1.709 -0.760 1.883 sum -10.906 -9.548 -15.968 21.566 Atomic orbital electron populations 1.69938 1.06031 1.27220 1.48990 1.25021 0.94859 0.99345 0.94306 0.86609 0.79598 0.82739 0.78799 1.20101 1.21260 1.20064 1.20919 0.92995 0.89672 1.52240 0.91915 1.20502 0.94332 0.91288 0.92381 1.23547 0.94336 0.93450 0.90381 1.50342 1.41694 1.04560 1.39709 1.17983 0.81280 0.82044 0.81041 1.90644 1.56110 1.40709 1.56487 1.23214 0.96447 0.98955 0.95843 1.24858 0.92944 1.01875 0.94152 1.23304 0.89373 0.98886 0.88233 1.44130 1.39656 1.09484 1.36701 1.16431 0.79548 0.85030 0.79766 1.90918 1.62706 1.21853 1.63948 1.22533 1.02777 0.84268 1.01849 1.70203 1.11755 1.23264 1.11494 1.22522 1.00592 0.94880 1.00150 1.23045 0.99552 0.94690 0.98893 1.42971 1.30227 1.11047 1.28188 0.72756 1.23968 0.96863 0.94800 0.96153 1.24365 0.94619 1.01640 0.92863 1.23765 0.99526 0.76425 1.01985 0.92588 0.91671 0.90649 0.91904 0.90250 0.88987 0.74405 0.80303 0.79486 0.89818 0.89689 0.89039 0.90507 0.91690 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.18 13.27 55.43 0.74 -23.44 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.52 -13.23 8.77 -34.44 -0.30 -13.54 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.03 0.80 3.62 -90.85 -0.33 0.47 16 10 C 0.10 2.18 8.39 -2.97 -0.02 2.15 16 11 N -0.63 -13.01 3.61 -178.43 -0.64 -13.65 16 12 C 0.59 11.79 8.17 -10.99 -0.09 11.70 16 13 O -0.56 -12.65 17.82 5.56 0.10 -12.55 16 14 C -0.14 -2.26 3.11 -172.27 -0.54 -2.80 16 15 C -0.10 -1.48 7.93 -24.71 -0.20 -1.68 16 16 C 0.09 1.17 3.92 -147.16 -0.58 0.60 16 17 N -0.65 -7.49 5.71 -63.78 -0.36 -7.85 16 18 C 0.61 7.83 7.81 -12.53 -0.10 7.73 16 19 O -0.52 -8.23 17.02 5.28 0.09 -8.14 16 20 C 0.15 1.60 7.95 -154.52 -1.23 0.37 16 21 N -0.44 -4.61 10.89 -11.26 -0.12 -4.73 16 22 C -0.03 -0.21 11.85 -17.96 -0.21 -0.43 16 23 C -0.02 -0.13 12.00 -16.93 -0.20 -0.33 16 24 N -0.52 -4.22 6.14 -10.78 -0.07 -4.29 16 25 H 0.43 2.80 8.96 -40.82 -0.37 2.44 16 26 C -0.08 -1.02 7.78 -26.71 -0.21 -1.22 16 27 C -0.10 -1.39 7.76 -25.99 -0.20 -1.59 16 28 C 0.11 2.24 8.17 -2.98 -0.02 2.22 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.07 1.66 8.13 -51.93 -0.42 1.24 16 31 H 0.08 1.51 8.09 -51.93 -0.42 1.09 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.10 7.91 -51.93 -0.41 0.69 16 34 H 0.09 1.53 7.45 -51.93 -0.39 1.15 16 35 H 0.42 3.95 8.51 -40.82 -0.35 3.60 16 36 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.19 0.35 8.06 -52.48 -0.42 -0.07 16 38 H 0.08 0.98 7.94 -51.93 -0.41 0.57 16 39 H 0.08 1.00 7.91 -51.93 -0.41 0.59 16 40 H 0.09 1.46 7.97 -51.92 -0.41 1.05 16 41 H 0.08 1.02 7.93 -51.93 -0.41 0.60 16 42 H 0.06 1.40 7.63 -51.93 -0.40 1.00 16 43 H 0.07 1.60 8.09 -51.93 -0.42 1.18 16 LS Contribution 374.92 15.07 5.65 5.65 Total: -1.00 -32.39 374.92 -9.60 -41.99 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -5.63 Total: 6.52 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -4.33 Total: 5.34 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.46 Total: -53.97 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: 0.19 Total: -20.69 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.39 -9.60 -41.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275513380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.130 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds