Wall clock time and date at job start Tue Mar 31 2020 06:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00415 * 2 1 4 4 H 1.48495 * 109.46933 * 270.00437 * 3 2 1 5 5 H 1.48500 * 109.46780 * 30.00107 * 3 2 1 6 6 H 1.48498 * 109.47088 * 150.00112 * 3 2 1 7 7 C 1.38811 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00095 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99858 * 179.97438 * 7 2 1 10 10 C 1.46508 * 119.99776 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46971 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.47381 * 179.97438 * 11 10 9 13 13 C 1.38236 * 119.99875 * 90.00337 * 12 11 10 14 14 C 1.38228 * 120.00336 * 179.97438 * 13 12 11 15 15 C 1.38241 * 120.00104 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00378 * 179.97438 * 15 14 13 17 17 N 1.46496 * 109.46760 * 90.00212 * 16 15 14 18 18 C 1.34774 * 119.99544 * 180.02562 * 17 16 15 19 19 O 1.21279 * 120.00472 * 0.02562 * 18 17 16 20 20 C 1.50706 * 120.00020 * 180.02562 * 18 17 16 21 21 N 1.46496 * 109.47106 * 179.97438 * 20 18 17 22 22 C 1.34601 * 126.43539 * 124.99934 * 21 20 18 23 23 N 1.31074 * 106.67775 * 180.02562 * 22 21 20 24 24 N 1.28837 * 107.99248 * 359.97438 * 23 22 21 25 25 N 1.28742 * 109.39448 * 359.73742 * 24 23 22 26 26 C 1.38241 * 119.99612 * 0.25970 * 15 14 13 27 27 C 1.38234 * 120.00374 * 270.02527 * 12 11 10 28 28 H 0.97001 * 119.99776 * 359.97438 * 1 2 3 29 29 H 0.96992 * 120.00199 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.46872 * 60.00154 * 10 9 7 31 31 H 1.08992 * 109.47128 * 300.00120 * 10 9 7 32 32 H 1.09008 * 109.47281 * 60.00220 * 11 10 9 33 33 H 1.09001 * 109.47364 * 300.00729 * 11 10 9 34 34 H 1.08000 * 119.99945 * 359.97438 * 13 12 11 35 35 H 1.08006 * 120.00433 * 180.02562 * 14 13 12 36 36 H 1.08996 * 109.46805 * 330.00330 * 16 15 14 37 37 H 1.08992 * 109.46894 * 210.00480 * 16 15 14 38 38 H 0.96994 * 120.00700 * 0.02562 * 17 16 15 39 39 H 1.09001 * 109.46953 * 299.99667 * 20 18 17 40 40 H 1.09000 * 109.47318 * 59.99264 * 20 18 17 41 41 H 1.08000 * 126.66566 * 359.96461 * 22 21 20 42 42 H 1.07993 * 120.00043 * 179.72363 * 26 15 14 43 43 H 1.08000 * 120.00158 * 0.02562 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2022 -0.0011 10 6 4.1120 -2.4711 -0.0011 11 6 5.6162 -2.1916 -0.0024 12 6 6.3697 -3.4966 -0.0017 13 6 6.7145 -4.0962 -1.1986 14 6 7.4061 -5.2930 -1.1981 15 6 7.7525 -5.8907 -0.0007 16 6 8.5060 -7.1958 -0.0001 17 7 9.9463 -6.9281 -0.0012 18 6 10.8221 -7.9525 -0.0015 19 8 10.4179 -9.0959 -0.0012 20 6 12.3038 -7.6771 -0.0020 21 7 13.0362 -8.9458 -0.0016 22 6 13.9736 -9.3281 -0.8887 23 7 14.3699 -10.5235 -0.5256 24 7 13.7109 -10.8578 0.5298 25 7 12.9083 -9.9043 0.8525 26 6 7.4025 -5.2941 1.1962 27 6 6.7156 -4.0945 1.1957 28 1 -0.4850 0.8401 0.0004 29 1 3.8645 -0.3623 -0.0014 30 1 3.8483 -3.0428 -0.8908 31 1 3.8489 -3.0424 0.8891 32 1 5.8803 -1.6196 0.8872 33 1 5.8789 -1.6203 -0.8927 34 1 6.4435 -3.6295 -2.1341 35 1 7.6758 -5.7613 -2.1333 36 1 8.2421 -7.7681 -0.8895 37 1 8.2432 -7.7666 0.8904 38 1 10.2697 -6.0136 -0.0018 39 1 12.5668 -7.1057 -0.8922 40 1 12.5674 -7.1054 0.8877 41 1 14.3293 -8.7605 -1.7359 42 1 7.6692 -5.7632 2.1317 43 1 6.4456 -3.6265 2.1308 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491897970.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:35 Heat of formation + Delta-G solvation = 127.226282 kcal Electronic energy + Delta-G solvation = -25580.806685 eV Core-core repulsion = 21664.504266 eV Total energy + Delta-G solvation = -3916.302418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.62194 -40.58072 -39.58534 -36.34983 -35.83492 -35.08798 -33.08375 -32.85189 -31.37569 -31.13800 -30.17262 -28.62469 -25.97301 -24.30911 -23.98213 -23.26464 -22.93547 -21.55732 -21.39726 -20.74047 -18.69457 -18.39137 -17.67484 -17.12988 -16.69328 -16.40699 -16.25050 -15.70818 -15.68019 -15.21251 -14.57165 -14.34742 -14.27879 -14.08920 -13.82256 -13.56603 -13.25954 -13.02699 -12.88445 -12.82065 -12.56976 -12.51159 -11.69840 -11.63524 -11.58286 -11.44687 -11.41211 -11.06016 -10.91330 -10.77451 -10.76791 -10.56842 -10.21767 -9.78307 -9.65166 -9.12138 -8.94981 -8.78327 -7.29988 -5.81723 -3.18173 0.71633 0.97049 1.21622 1.29745 1.75958 1.84902 2.45463 3.32007 3.34328 3.40469 3.47102 3.58325 3.69554 3.85536 4.00658 4.24329 4.28994 4.53784 4.55191 4.75293 4.80579 4.91190 4.92282 5.18272 5.20856 5.29389 5.35132 5.47033 5.51540 5.55136 5.57742 5.66047 5.66562 5.83667 5.88679 6.02472 6.21993 6.28884 6.42193 6.62874 6.69261 6.72654 6.79942 7.38702 7.94006 8.16901 8.36886 9.15550 9.87569 10.06981 11.36595 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.048832 B = 0.001495 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.257343 B =18720.512880 C =18886.494616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.090 0.910 9 N -0.757 5.757 10 C 0.165 3.835 11 C -0.099 4.099 12 C -0.051 4.051 13 C -0.118 4.118 14 C -0.097 4.097 15 C -0.130 4.130 16 C 0.167 3.833 17 N -0.716 5.716 18 C 0.499 3.501 19 O -0.509 6.509 20 C 0.096 3.904 21 N -0.302 5.302 22 C 0.160 3.840 23 N -0.306 5.306 24 N -0.077 5.077 25 N -0.063 5.063 26 C -0.096 4.096 27 C -0.117 4.117 28 H 0.260 0.740 29 H 0.361 0.639 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.406 0.594 39 H 0.145 0.855 40 H 0.137 0.863 41 H 0.236 0.764 42 H 0.122 0.878 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.852 -11.275 -2.360 31.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.377 4.377 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.037 3.963 11 C -0.136 4.136 12 C -0.051 4.051 13 C -0.136 4.136 14 C -0.116 4.116 15 C -0.130 4.130 16 C 0.045 3.955 17 N -0.369 5.369 18 C 0.282 3.718 19 O -0.383 6.383 20 C -0.030 4.030 21 N -0.104 5.104 22 C -0.138 4.138 23 N -0.153 5.153 24 N -0.071 5.071 25 N -0.049 5.049 26 C -0.115 4.115 27 C -0.135 4.135 28 H 0.070 0.930 29 H 0.193 0.807 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.240 0.760 39 H 0.163 0.837 40 H 0.155 0.845 41 H 0.252 0.748 42 H 0.140 0.860 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 29.301 -13.388 -1.534 32.251 hybrid contribution 0.431 2.741 -0.621 2.844 sum 29.732 -10.646 -2.155 31.654 Atomic orbital electron populations 1.69703 1.05118 1.25876 1.57391 1.24685 0.95254 0.97243 1.01933 0.86526 0.79170 0.84911 0.77770 1.21048 1.21657 1.20365 1.19061 0.80563 0.94810 1.43256 0.89216 1.42712 1.04123 1.02148 1.91315 1.20566 0.87388 0.89363 0.98944 1.20926 0.96251 0.93380 1.03092 1.20044 0.95594 0.96481 0.93022 1.21129 0.98640 0.95668 0.98118 1.21015 0.98040 0.95337 0.97165 1.19658 1.02704 0.96773 0.93866 1.20224 0.77484 0.94315 1.03516 1.45981 1.06673 1.09137 1.75117 1.20161 0.87504 0.86081 0.78089 1.90884 1.79154 1.20814 1.47401 1.21995 0.90744 0.81575 1.08694 1.48153 1.27687 1.15378 1.19221 1.27774 0.92116 0.95147 0.98793 1.75013 1.21902 1.09810 1.08573 1.78708 1.03165 1.17654 1.07570 1.79035 1.17886 0.93772 1.14250 1.21034 0.97934 0.95280 0.97240 1.21139 0.98630 0.95629 0.98130 0.93004 0.80670 0.95372 0.95409 0.90790 0.90779 0.85601 0.86086 0.90323 0.90201 0.75953 0.83733 0.84506 0.74780 0.86013 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.07 13.97 55.49 0.78 -28.29 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.89 21.59 27.73 -169.99 -4.71 16.87 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 7 C -0.25 -6.95 10.47 -15.06 -0.16 -7.11 16 8 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 9 N -0.76 -17.58 5.41 -59.91 -0.32 -17.90 16 10 C 0.16 3.03 6.24 -4.04 -0.03 3.01 16 11 C -0.10 -1.35 5.46 -27.89 -0.15 -1.50 16 12 C -0.05 -0.57 5.13 -104.63 -0.54 -1.11 16 13 C -0.12 -1.17 9.70 -39.59 -0.38 -1.56 16 14 C -0.10 -0.78 9.70 -39.58 -0.38 -1.17 16 15 C -0.13 -0.97 5.25 -104.62 -0.55 -1.52 16 16 C 0.17 1.08 5.80 -5.19 -0.03 1.05 16 17 N -0.72 -2.90 5.55 -61.48 -0.34 -3.25 16 18 C 0.50 2.84 7.85 -10.98 -0.09 2.75 16 19 O -0.51 -5.78 15.71 5.56 0.09 -5.69 16 20 C 0.10 0.15 6.96 -5.19 -0.04 0.11 16 21 N -0.30 -1.88 3.19 -63.73 -0.20 -2.08 16 22 C 0.16 0.83 12.79 -90.39 -1.16 -0.33 16 23 N -0.31 -3.07 12.36 29.59 0.37 -2.71 16 24 N -0.08 -0.95 13.43 60.35 0.81 -0.14 16 25 N -0.06 -0.69 12.30 60.35 0.74 0.05 16 26 C -0.10 -0.80 9.70 -39.58 -0.38 -1.18 16 27 C -0.12 -1.19 9.70 -39.58 -0.38 -1.57 16 28 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.36 8.04 5.53 -40.82 -0.23 7.82 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.98 8.09 -51.92 -0.42 0.56 16 33 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 36 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 37 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 38 H 0.41 0.53 8.46 -40.82 -0.35 0.19 16 39 H 0.14 -0.48 8.08 -51.93 -0.42 -0.90 16 40 H 0.14 -0.14 8.14 -51.93 -0.42 -0.56 16 41 H 0.24 -0.21 8.06 -52.49 -0.42 -0.63 16 42 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 376.14 15.07 5.67 5.67 Total: -1.00 -40.05 376.14 -7.14 -47.19 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.64 Total: 0.35 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -4.36 Total: -10.07 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 1.83 Total: -54.31 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: 0.09 Total: -5.69 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.87 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -40.05 -7.14 -47.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491897970.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.414 kcal (2) G-P(sol) polarization free energy of solvation -40.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds