Wall clock time and date at job start Tue Mar 31 2020 05:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 N 1.46898 * 109.47206 * 184.99822 * 4 2 1 6 6 C 1.46898 * 110.99995 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.47102 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47046 * 180.02562 * 7 6 5 9 9 C 1.47053 * 125.40939 * 269.71636 * 8 7 6 10 10 C 1.54101 * 103.86348 * 179.87217 * 9 8 7 11 11 N 1.47054 * 103.86348 * 0.37337 * 10 9 8 12 12 C 1.33953 * 125.41049 * 90.02339 * 8 7 6 13 13 O 1.21583 * 123.04263 * 359.97438 * 12 8 7 14 14 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 15 15 C 1.34777 * 119.99525 * 274.99614 * 14 2 1 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 2 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 2 18 18 S 1.80997 * 109.47151 * 180.27780 * 17 15 14 19 19 C 1.76196 * 100.00314 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00018 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00626 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00336 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99494 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47141 * 90.00156 * 23 21 19 25 25 H 1.48505 * 109.47177 * 209.99950 * 23 21 19 26 26 H 1.48496 * 109.47259 * 329.99923 * 23 21 19 27 27 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 28 28 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 29 29 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46872 * 304.99946 * 4 2 1 31 31 H 1.08994 * 109.47319 * 64.99922 * 4 2 1 32 32 H 1.00900 * 110.99902 * 303.95391 * 5 4 2 33 33 H 1.09002 * 109.47134 * 300.00065 * 6 5 4 34 34 H 1.08996 * 109.47008 * 60.00256 * 6 5 4 35 35 H 1.09002 * 109.47018 * 299.99939 * 7 6 5 36 36 H 1.08991 * 109.47078 * 59.99673 * 7 6 5 37 37 H 1.09005 * 110.54883 * 298.60039 * 9 8 7 38 38 H 1.08998 * 110.54999 * 61.40603 * 9 8 7 39 39 H 1.08996 * 110.75835 * 241.67797 * 10 9 8 40 40 H 1.08999 * 110.46573 * 118.92569 * 10 9 8 41 41 H 0.96991 * 125.41152 * 179.75498 * 11 10 9 42 42 H 0.97000 * 120.00580 * 95.00360 * 14 2 1 43 43 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 44 44 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 45 45 H 0.97003 * 119.99714 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5040 -0.8265 -1.1906 6 6 4.0302 -1.5155 -2.3765 7 6 5.5545 -1.6065 -2.2791 8 7 6.0793 -2.2931 -3.4620 9 6 6.2911 -3.7434 -3.5814 10 6 6.8456 -3.9193 -5.0084 11 7 6.8960 -2.5485 -5.5383 12 6 6.4479 -1.6990 -4.6045 13 8 6.3813 -0.4975 -4.7785 14 7 2.0184 -0.6908 1.1960 15 6 2.1472 -0.0185 2.3570 16 8 1.8583 1.1582 2.4118 17 6 2.6437 -0.7305 3.5889 18 16 2.6984 0.4307 4.9762 19 6 3.2947 -0.6363 6.2451 20 1 3.5050 -1.6725 6.0248 21 6 3.4953 -0.1451 7.5277 22 7 3.9413 -0.9422 8.4756 23 14 3.1322 1.6473 7.9086 24 1 1.7195 1.7843 8.3449 25 1 4.0327 2.1152 8.9929 26 1 3.3561 2.4673 6.6910 27 1 -0.3632 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6054 -1.7196 -1.2954 31 1 1.7517 -0.1581 -2.1370 32 1 3.9280 0.0827 -1.0825 33 1 3.6094 -2.5196 -2.4299 34 1 3.7557 -0.9584 -3.2721 35 1 5.9756 -0.6025 -2.2254 36 1 5.8287 -2.1638 -1.3834 37 1 7.0153 -4.0864 -2.8423 38 1 5.3478 -4.2782 -3.4709 39 1 6.1780 -4.5372 -5.6088 40 1 7.8444 -4.3547 -4.9782 41 1 7.2047 -2.2991 -6.4233 42 1 2.2492 -1.6319 1.1524 43 1 1.9698 -1.5528 3.8298 44 1 3.6437 -1.1227 3.4038 45 1 4.0811 -0.5988 9.3720 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669245821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:42 Heat of formation + Delta-G solvation = -51.708276 kcal Electronic energy + Delta-G solvation = -25183.845651 eV Core-core repulsion = 21362.935248 eV Total energy + Delta-G solvation = -3820.910403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.37418 -39.44177 -37.34124 -36.69941 -35.40422 -33.76153 -32.40153 -31.47655 -29.79642 -28.71899 -28.42589 -25.57856 -25.29841 -23.49892 -22.82462 -21.66167 -20.52799 -20.23946 -18.11199 -17.81599 -17.09054 -16.87036 -16.51780 -16.22626 -15.61147 -15.24558 -14.96003 -14.79763 -14.63224 -14.46938 -14.23540 -14.14936 -13.88498 -13.32324 -13.27802 -13.19465 -12.79590 -12.74976 -12.66186 -12.61197 -12.14898 -12.01294 -11.67650 -11.48461 -11.22200 -11.00972 -10.97390 -10.57669 -10.53976 -9.81826 -9.75233 -9.40520 -9.06149 -8.97068 -8.82832 -8.79725 -8.44127 -6.86295 -6.25400 -3.96123 2.09885 2.75238 2.84511 3.10180 3.34827 3.36975 3.41255 3.54112 3.72821 3.86119 3.94910 4.34201 4.36817 4.39978 4.59345 4.72987 4.80107 4.82262 4.89026 4.97621 5.11677 5.13737 5.14530 5.15720 5.26366 5.27065 5.41073 5.42785 5.57617 5.62663 5.64806 5.85743 5.96659 6.09714 6.12284 6.25398 6.57603 6.63659 6.73319 6.99875 7.06867 7.80098 7.97872 8.18816 8.45471 8.63986 9.21154 10.83853 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015336 B = 0.002088 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.373612 B =13406.586949 C =14476.446452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.086 0.914 4 C 0.054 3.946 5 N -0.683 5.683 6 C 0.044 3.956 7 C 0.151 3.849 8 N -0.631 5.631 9 C 0.091 3.909 10 C 0.092 3.908 11 N -0.744 5.744 12 C 0.697 3.303 13 O -0.586 6.586 14 N -0.718 5.718 15 C 0.532 3.468 16 O -0.526 6.526 17 C -0.122 4.122 18 S -0.144 6.144 19 C -0.520 4.520 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.882 5.882 23 Si 0.857 3.143 24 H -0.268 1.268 25 H -0.275 1.275 26 H -0.235 1.235 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.348 0.652 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.429 0.571 42 H 0.402 0.598 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.975 -9.837 -29.638 31.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.040 3.960 3 H 0.104 0.896 4 C -0.076 4.076 5 N -0.315 5.315 6 C -0.087 4.087 7 C 0.029 3.971 8 N -0.370 5.370 9 C -0.033 4.033 10 C -0.033 4.033 11 N -0.407 5.407 12 C 0.397 3.603 13 O -0.463 6.463 14 N -0.371 5.371 15 C 0.318 3.682 16 O -0.401 6.401 17 C -0.273 4.273 18 S 0.083 5.917 19 C -0.667 4.667 20 H 0.106 0.894 21 C -0.114 4.114 22 N -0.518 5.518 23 Si 0.682 3.318 24 H -0.193 1.193 25 H -0.200 1.200 26 H -0.159 1.159 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.166 0.834 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.270 0.730 42 H 0.236 0.764 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.451 -7.790 -28.909 29.975 hybrid contribution 0.385 -0.702 -0.743 1.092 sum 1.836 -8.492 -29.651 30.898 Atomic orbital electron populations 1.22154 0.95074 1.02180 1.02771 1.20854 0.93809 0.97431 0.83906 0.89638 1.22273 0.87891 1.00995 0.96443 1.60321 1.05304 1.26528 1.39378 1.22312 0.95164 0.99583 0.91630 1.21154 0.92606 0.98396 0.84949 1.47095 1.67937 1.07307 1.14630 1.22416 1.01937 0.82283 0.96639 1.22348 1.02282 0.85008 0.93684 1.45118 1.70809 1.07251 1.17480 1.15955 0.78155 0.85106 0.81065 1.90981 1.61840 1.12340 1.81148 1.45812 1.68459 1.14094 1.08753 1.20230 0.76856 0.87172 0.83947 1.90687 1.48923 1.15872 1.84642 1.23261 1.04515 1.03255 0.96243 1.84772 1.87356 1.16699 1.02920 1.22330 1.50541 0.98705 0.95140 0.89425 1.24718 0.93422 0.98259 0.94990 1.69942 1.43754 1.35754 1.02387 0.86730 0.79256 0.85316 0.80517 1.19268 1.20021 1.15900 0.91369 0.91994 0.92422 0.90373 0.93777 0.83404 0.90864 0.94777 0.89699 0.88870 0.89671 0.89903 0.89960 0.89920 0.72971 0.76390 0.88745 0.88486 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.48 37.16 0.35 -1.30 16 2 C 0.15 1.57 2.81 -67.93 -0.19 1.37 16 3 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 4 C 0.05 0.43 5.24 -3.82 -0.02 0.41 16 5 N -0.68 -5.72 6.22 -113.78 -0.71 -6.42 16 6 C 0.04 0.33 6.01 -3.82 -0.02 0.31 16 7 C 0.15 1.18 6.26 -4.04 -0.03 1.15 16 8 N -0.63 -4.82 2.96 -178.81 -0.53 -5.35 16 9 C 0.09 0.34 7.68 -3.17 -0.02 0.32 16 10 C 0.09 0.25 8.06 -3.16 -0.03 0.22 16 11 N -0.74 -4.56 6.37 -64.70 -0.41 -4.97 16 12 C 0.70 7.10 8.60 -88.39 -0.76 6.34 16 13 O -0.59 -8.71 17.53 5.29 0.09 -8.62 16 14 N -0.72 -8.96 4.80 -53.80 -0.26 -9.22 16 15 C 0.53 9.37 7.81 -10.98 -0.09 9.28 16 16 O -0.53 -11.28 15.53 5.55 0.09 -11.19 16 17 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 18 S -0.14 -3.67 18.55 -107.50 -1.99 -5.67 16 19 C -0.52 -15.05 10.04 30.94 0.31 -14.74 16 20 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 21 C 0.09 2.78 5.50 -17.43 -0.10 2.69 16 22 N -0.88 -26.74 13.97 55.49 0.78 -25.96 16 23 Si 0.86 21.99 27.74 -169.99 -4.72 17.28 16 24 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 25 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.35 3.18 8.73 -39.29 -0.34 2.84 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.81 7.91 -51.93 -0.41 0.39 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 39 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 40 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 41 H 0.43 1.99 8.96 -40.82 -0.37 1.62 16 42 H 0.40 4.17 8.60 -40.82 -0.35 3.82 16 43 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 44 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 45 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 390.40 15.07 5.88 5.88 Total: -1.00 -37.93 390.40 -9.51 -47.44 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.36 Total: 2.90 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -0.37 Total: 3.91 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -1.13 Total: -51.93 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: 0.18 Total: -19.81 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.72 Total: 17.28 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.93 -9.51 -47.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669245821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.268 kcal (2) G-P(sol) polarization free energy of solvation -37.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds