Wall clock time and date at job start Tue Mar 31 2020 05:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35449 * 126.38942 * 2 1 4 4 N 1.33183 * 108.61948 * 179.97438 * 3 2 1 5 5 C 1.32656 * 109.12819 * 359.97438 * 4 3 2 6 6 C 1.40648 * 132.14624 * 180.33678 * 5 4 3 7 7 C 1.38441 * 119.08471 * 180.15222 * 6 5 4 8 8 C 1.47649 * 120.37189 * 179.76153 * 7 6 5 9 9 O 1.21589 * 119.99910 * 359.71490 * 8 7 6 10 10 N 1.34779 * 120.00025 * 179.72206 * 8 7 6 11 11 C 1.46506 * 119.99876 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47164 * 179.97438 * 11 10 8 13 13 O 1.42901 * 113.27929 * 313.07011 * 12 11 10 14 14 C 1.53492 * 114.20821 * 180.02562 * 12 11 10 15 15 N 1.47074 * 87.98581 * 220.34913 * 14 12 11 16 16 C 1.36930 * 136.05482 * 207.08964 * 15 14 12 17 17 H 1.07993 * 120.00328 * 6.80160 * 16 15 14 18 18 C 1.38815 * 119.99694 * 186.80721 * 16 15 14 19 19 N 1.31624 * 119.99778 * 172.52700 * 18 16 15 20 20 Si 1.86795 * 120.00056 * 352.24951 * 18 16 15 21 21 H 1.48498 * 109.47397 * 55.36216 * 20 18 16 22 22 H 1.48501 * 109.47238 * 175.35897 * 20 18 16 23 23 H 1.48502 * 109.47311 * 295.36092 * 20 18 16 24 24 C 1.47069 * 87.88197 * 27.34104 * 15 14 12 25 25 C 1.41776 * 119.25397 * 359.48072 * 7 6 5 26 26 C 1.34540 * 120.15123 * 0.28083 * 25 7 6 27 27 N 1.36437 * 126.38962 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47465 * 270.00013 * 1 2 3 29 29 H 1.08996 * 109.47114 * 30.00291 * 1 2 3 30 30 H 1.09001 * 109.47130 * 150.00136 * 1 2 3 31 31 H 1.07994 * 125.68896 * 0.02562 * 3 2 1 32 32 H 1.07993 * 120.45762 * 359.90918 * 6 5 4 33 33 H 0.96993 * 119.99975 * 359.97438 * 10 8 7 34 34 H 1.09001 * 109.46730 * 60.00319 * 11 10 8 35 35 H 1.09002 * 109.47201 * 300.00444 * 11 10 8 36 36 H 0.96698 * 114.00651 * 46.93493 * 13 12 11 37 37 H 1.08994 * 113.46944 * 105.56399 * 14 12 11 38 38 H 1.09001 * 113.51895 * 335.12968 * 14 12 11 39 39 H 0.96996 * 119.99886 * 4.49658 * 19 18 16 40 40 H 1.08992 * 113.46878 * 87.44462 * 24 15 14 41 41 H 1.09002 * 113.46558 * 217.87894 * 24 15 14 42 42 H 1.08000 * 119.92330 * 180.25375 * 25 7 6 43 43 H 1.08000 * 119.52176 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3106 1.0904 0.0000 4 7 3.5789 0.6839 0.0006 5 6 3.6103 -0.6423 0.0015 6 6 4.6752 -1.5611 0.0085 7 6 4.3944 -2.9167 0.0043 8 6 5.4903 -3.9061 0.0062 9 8 6.6472 -3.5319 0.0061 10 7 5.2084 -5.2241 0.0077 11 6 6.2959 -6.2058 0.0090 12 6 5.7079 -7.6183 0.0113 13 8 4.6635 -7.7937 0.9707 14 6 6.7584 -8.7373 0.0134 15 7 5.9065 -9.4680 -0.9372 16 6 5.6933 -10.7809 -1.2623 17 1 6.1542 -11.5636 -0.6782 18 6 4.8847 -11.1057 -2.3429 19 7 4.7965 -12.3554 -2.7466 20 14 3.9160 -9.7705 -3.2192 21 1 4.8423 -8.6997 -3.6670 22 1 3.2256 -10.3526 -4.3982 23 1 2.9097 -9.1977 -2.2894 24 6 5.3893 -8.1675 -1.3890 25 6 3.0426 -3.3443 0.0043 26 6 2.0475 -2.4389 0.0026 27 7 2.3164 -1.0983 -0.0005 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.9782 2.1179 0.0004 32 1 5.6977 -1.2139 0.0131 33 1 4.2856 -5.5226 0.0080 34 1 6.9098 -6.0667 0.8989 35 1 6.9100 -6.0688 -0.8811 36 1 4.0033 -7.0871 0.9672 37 1 6.8598 -9.2358 0.9774 38 1 7.7173 -8.4346 -0.4073 39 1 5.2440 -13.0582 -2.2500 40 1 5.9867 -7.7137 -2.1796 41 1 4.3240 -8.1805 -1.6198 42 1 2.8112 -4.3992 0.0052 43 1 1.0214 -2.7758 0.0022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672081306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:36 Heat of formation + Delta-G solvation = 82.613410 kcal Electronic energy + Delta-G solvation = -27375.373219 eV Core-core repulsion = 23424.843491 eV Total energy + Delta-G solvation = -3950.529729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.30464 -40.38096 -39.22242 -37.40060 -35.44206 -34.38556 -34.33617 -32.35546 -31.87940 -30.50909 -29.21450 -27.43061 -26.05351 -25.60666 -24.07661 -23.62961 -21.63430 -21.54553 -20.91730 -19.72611 -18.58191 -17.89031 -17.56488 -17.20239 -16.54017 -16.40100 -16.04952 -15.56734 -15.17561 -15.17306 -14.72294 -14.21502 -14.03665 -14.00110 -13.75729 -13.65724 -13.57880 -13.32033 -13.18277 -13.00595 -12.75596 -12.28330 -12.26580 -12.13194 -11.69925 -11.21785 -11.08253 -10.62206 -10.54965 -10.47963 -10.19300 -10.15426 -9.41625 -9.30502 -9.26234 -9.01560 -8.91542 -8.19667 -7.21633 -6.36427 -3.26739 0.05300 0.58601 2.05877 2.19923 2.61174 2.72557 3.27228 3.30745 3.36225 3.57870 3.75888 3.96516 4.09107 4.14658 4.23705 4.44222 4.49648 4.52616 4.53679 4.68169 4.79420 4.87534 4.97909 4.99490 5.04233 5.22635 5.35794 5.42172 5.46443 5.53569 5.58254 5.74227 5.91546 5.95356 6.04248 6.06353 6.14423 6.18791 6.27930 6.45599 6.54041 7.01682 7.11759 7.38428 7.73172 7.88606 8.19631 8.93152 9.44658 10.28482 11.16564 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.019009 B = 0.002632 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.632951 B =10636.680045 C =11550.357366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.059 4.059 3 C 0.034 3.966 4 N -0.474 5.474 5 C 0.205 3.795 6 C 0.005 3.995 7 C -0.125 4.125 8 C 0.566 3.434 9 O -0.528 6.528 10 N -0.720 5.720 11 C 0.105 3.895 12 C 0.070 3.930 13 O -0.517 6.517 14 C 0.140 3.860 15 N -0.618 5.618 16 C -0.300 4.300 17 H 0.084 0.916 18 C -0.027 4.027 19 N -0.934 5.934 20 Si 1.073 2.927 21 H -0.288 1.288 22 H -0.295 1.295 23 H -0.295 1.295 24 C 0.077 3.923 25 C -0.117 4.117 26 C 0.052 3.948 27 N -0.352 5.352 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.184 0.816 32 H 0.167 0.833 33 H 0.396 0.604 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.360 0.640 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.261 0.739 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.155 0.845 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.340 25.946 7.036 28.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.174 4.174 3 C -0.119 4.119 4 N -0.193 5.193 5 C -0.036 4.036 6 C -0.017 4.017 7 C -0.135 4.135 8 C 0.353 3.647 9 O -0.405 6.405 10 N -0.373 5.373 11 C -0.019 4.019 12 C 0.026 3.974 13 O -0.320 6.320 14 C 0.012 3.988 15 N -0.345 5.345 16 C -0.426 4.426 17 H 0.102 0.898 18 C -0.225 4.225 19 N -0.576 5.576 20 Si 0.907 3.093 21 H -0.215 1.215 22 H -0.222 1.222 23 H -0.223 1.223 24 C -0.049 4.049 25 C -0.138 4.138 26 C -0.069 4.069 27 N -0.025 5.025 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.201 0.799 32 H 0.184 0.816 33 H 0.232 0.768 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.207 0.793 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.172 0.828 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.553 26.111 5.820 28.086 hybrid contribution -0.505 -0.538 1.133 1.352 sum -9.057 25.573 6.953 28.006 Atomic orbital electron populations 1.20228 0.86171 1.03790 1.03028 1.21401 0.94993 0.85206 1.15801 1.22413 0.87753 0.98828 1.02950 1.70688 1.21905 1.06065 1.20674 1.20697 0.83600 0.90964 1.08346 1.20704 0.98426 0.89380 0.93157 1.19889 0.93441 0.93491 1.06635 1.17809 0.88114 0.82059 0.76730 1.90828 1.20585 1.79816 1.49269 1.45813 1.10574 1.05642 1.75288 1.22038 0.89626 0.86407 1.03838 1.23346 0.91211 0.91709 0.91090 1.86704 1.37745 1.49813 1.57761 1.22337 0.92378 0.88793 0.95242 1.45705 1.45314 1.00280 1.43204 1.20115 1.29717 0.79008 1.13788 0.89798 1.25737 0.99467 1.01532 0.95775 1.70916 1.47975 0.99572 1.39153 0.83650 0.76026 0.74036 0.75638 1.21489 1.22193 1.22318 1.23502 0.99216 0.88006 0.94173 1.20818 0.90805 1.00251 1.01936 1.21423 1.01470 0.80167 1.03827 1.42735 1.08903 1.05773 1.45093 0.90647 0.89482 0.91485 0.79935 0.81598 0.76797 0.90065 0.89524 0.79332 0.92394 0.92542 0.92857 0.92741 0.92731 0.82776 0.81401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.30 36.00 0.37 0.09 16 2 C -0.06 -0.46 7.02 -81.54 -0.57 -1.03 16 3 C 0.03 0.30 11.75 -17.96 -0.21 0.09 16 4 N -0.47 -5.65 11.31 -12.80 -0.14 -5.80 16 5 C 0.20 2.30 7.79 -155.97 -1.22 1.08 16 6 C 0.00 0.05 9.70 -38.60 -0.37 -0.33 16 7 C -0.13 -1.22 5.90 -104.63 -0.62 -1.84 16 8 C 0.57 6.66 7.77 -12.42 -0.10 6.56 16 9 O -0.53 -8.06 16.36 5.29 0.09 -7.97 16 10 N -0.72 -7.50 5.30 -61.30 -0.32 -7.83 16 11 C 0.11 1.33 5.42 -4.04 -0.02 1.31 16 12 C 0.07 1.10 1.74 -89.97 -0.16 0.95 16 13 O -0.52 -8.08 13.56 -35.23 -0.48 -8.56 16 14 C 0.14 2.66 8.10 -8.50 -0.07 2.59 16 15 N -0.62 -14.95 3.70 -184.58 -0.68 -15.63 16 16 C -0.30 -8.65 11.08 -15.06 -0.17 -8.81 16 17 H 0.08 2.55 8.05 -52.49 -0.42 2.13 16 18 C -0.03 -0.79 5.50 -17.43 -0.10 -0.88 16 19 N -0.93 -29.41 13.70 55.49 0.76 -28.65 16 20 Si 1.07 26.26 25.13 -169.99 -4.27 21.99 16 21 H -0.29 -6.49 6.13 56.52 0.35 -6.15 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.29 -6.71 6.65 56.52 0.38 -6.34 16 24 C 0.08 1.52 5.15 -8.37 -0.04 1.48 16 25 C -0.12 -0.80 9.48 -39.54 -0.37 -1.17 16 26 C 0.05 0.34 10.80 -16.68 -0.18 0.16 16 27 N -0.35 -3.15 2.94 -58.55 -0.17 -3.33 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.21 8.13 -51.93 -0.42 -0.21 16 31 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.17 1.79 7.67 -52.49 -0.40 1.39 16 33 H 0.40 3.07 5.01 -40.82 -0.20 2.87 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 1.14 7.89 -51.93 -0.41 0.73 16 36 H 0.36 3.72 7.21 45.56 0.33 4.05 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 39 H 0.26 8.14 8.73 -40.82 -0.36 7.78 16 40 H 0.06 1.04 7.51 -51.93 -0.39 0.65 16 41 H 0.05 1.11 4.65 -51.93 -0.24 0.87 16 42 H 0.15 0.60 6.46 -52.49 -0.34 0.26 16 43 H 0.17 0.54 8.04 -52.49 -0.42 0.11 16 LS Contribution 357.47 15.07 5.39 5.39 Total: -1.00 -38.58 357.47 -8.36 -46.93 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.69 Total: 3.20 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -3.82 Total: 0.25 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -0.56 Total: -61.23 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.39 Total: -16.53 kcal Atomic # 14 Polarization: 26.26 SS G_CDS: -4.27 Total: 21.99 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -38.58 -8.36 -46.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672081306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.548 kcal (2) G-P(sol) polarization free energy of solvation -38.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds