Wall clock time and date at job start Tue Mar 31 2020 05:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39633 * 120.49072 * 6.95806 * 3 2 1 5 5 N 1.31760 * 120.88330 * 179.97438 * 4 3 2 6 6 C 1.31733 * 122.03702 * 359.97438 * 5 4 3 7 7 C 1.39598 * 120.88067 * 0.27795 * 6 5 4 8 8 C 1.47854 * 120.49400 * 179.69656 * 7 6 5 9 9 O 1.21552 * 120.00443 * 180.02562 * 8 7 6 10 10 N 1.34783 * 119.99661 * 0.02562 * 8 7 6 11 11 C 1.46504 * 119.99641 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47259 * 34.99979 * 11 10 8 13 13 C 1.53000 * 109.46958 * 274.99574 * 11 10 8 14 14 C 1.52998 * 109.46771 * 154.99983 * 11 10 8 15 15 N 1.46892 * 109.47296 * 304.99841 * 14 11 10 16 16 C 1.46904 * 111.00080 * 180.02562 * 15 14 11 17 17 C 1.50702 * 109.47159 * 179.97438 * 16 15 14 18 18 O 1.21295 * 120.00026 * 0.02562 * 17 16 15 19 19 N 1.34771 * 120.00058 * 179.97438 * 17 16 15 20 20 C 1.37099 * 120.00090 * 180.02562 * 19 17 16 21 21 H 1.07997 * 119.99674 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99887 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99710 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00061 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.46905 * 89.99970 * 24 22 20 26 26 H 1.48494 * 109.47096 * 209.99706 * 24 22 20 27 27 H 1.48500 * 109.47169 * 330.00091 * 24 22 20 28 28 C 1.39681 * 120.48813 * 186.93324 * 3 2 1 29 29 H 4.52731 * 13.92866 * 359.97438 * 4 2 1 30 30 H 1.08000 * 119.55855 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.55649 * 179.97438 * 6 5 4 32 32 H 0.96999 * 120.00202 * 0.02562 * 10 8 7 33 33 H 1.09000 * 109.47259 * 180.02562 * 13 11 10 34 34 H 1.08993 * 109.47500 * 300.00760 * 13 11 10 35 35 H 1.09008 * 109.46993 * 60.00648 * 13 11 10 36 36 H 1.09001 * 109.47116 * 65.00373 * 14 11 10 37 37 H 1.09001 * 109.47217 * 184.99674 * 14 11 10 38 38 H 1.00905 * 110.99796 * 303.95454 * 15 14 11 39 39 H 1.09002 * 109.47044 * 299.99567 * 16 15 14 40 40 H 1.08995 * 109.47123 * 59.99824 * 16 15 14 41 41 H 0.97000 * 119.99849 * 359.97438 * 19 17 16 42 42 H 0.97000 * 120.00240 * 180.02562 * 23 22 20 43 43 H 1.07996 * 120.91830 * 0.05355 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3150 -1.1934 -0.1458 5 7 4.6326 -1.2017 -0.1474 6 6 5.3385 -0.0976 -0.0137 7 6 4.7110 1.1396 0.1426 8 6 5.5117 2.3727 0.2986 9 8 4.9560 3.4451 0.4346 10 7 6.8579 2.3075 0.2901 11 6 7.6514 3.5294 0.4442 12 1 7.1406 4.2109 1.1244 13 6 7.8217 4.2022 -0.9194 14 6 9.0267 3.1759 1.0137 15 7 8.8601 2.4241 2.2647 16 6 10.1630 2.0673 2.8419 17 6 9.9523 1.2993 4.1213 18 8 8.8274 1.0713 4.5135 19 7 11.0137 0.8651 4.8293 20 6 10.8220 0.1660 5.9930 21 1 9.8204 -0.0363 6.3425 22 6 11.9164 -0.2812 6.7231 23 7 11.7326 -0.9508 7.8388 24 14 13.6488 0.0694 6.1188 25 1 14.1167 1.3622 6.6802 26 1 14.5568 -1.0195 6.5600 27 1 13.6500 0.1445 4.6357 28 6 3.3141 1.1958 0.1453 29 1 -1.0500 -0.0010 0.0004 30 1 2.7762 -2.1226 -0.2587 31 1 6.4172 -0.1508 -0.0202 32 1 7.3014 1.4517 0.1813 33 1 8.4124 5.1110 -0.8049 34 1 8.3323 3.5206 -1.5996 35 1 6.8418 4.4540 -1.3252 36 1 9.5726 2.5666 0.2935 37 1 9.5843 4.0914 1.2115 38 1 8.3015 2.9422 2.9263 39 1 10.7171 1.4503 2.1345 40 1 10.7281 2.9752 3.0524 41 1 11.9133 1.0465 4.5151 42 1 12.4965 -1.2627 8.3487 43 1 2.7968 2.1368 0.2606 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699378559.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:45 Heat of formation + Delta-G solvation = 25.626845 kcal Electronic energy + Delta-G solvation = -26469.893366 eV Core-core repulsion = 22516.892515 eV Total energy + Delta-G solvation = -3953.000852 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.91164 -39.43754 -38.50202 -36.79797 -34.77977 -34.37683 -33.77096 -32.78752 -31.69591 -31.44209 -30.31250 -27.81330 -25.34274 -24.90633 -24.32186 -23.15762 -21.85359 -20.93175 -19.49907 -19.35435 -18.38857 -17.70567 -17.30808 -16.88953 -16.25675 -15.93791 -15.38666 -15.31673 -15.12138 -14.89212 -14.52257 -14.13517 -14.08852 -13.96431 -13.48043 -13.38672 -13.21565 -12.86309 -12.72519 -12.62109 -12.27340 -12.14988 -11.99187 -11.79102 -11.72834 -11.18984 -11.17598 -11.05641 -10.61908 -10.47396 -10.08318 -9.99610 -9.69991 -9.59583 -9.26917 -9.10316 -8.64754 -8.26834 -8.19402 -6.32887 -3.84543 0.19285 0.62499 2.29924 2.42580 2.90349 2.97716 3.00274 3.04495 3.13236 3.66673 3.70901 3.74841 3.95436 4.03853 4.08374 4.42490 4.49685 4.54467 4.63797 4.79025 4.85788 4.96170 5.08348 5.14948 5.20425 5.32188 5.44090 5.45726 5.50606 5.56714 5.63763 5.68426 5.74934 5.81848 5.87731 5.95906 6.14353 6.32818 6.96098 7.09535 7.35282 7.44789 7.48994 7.55782 8.03694 8.12408 8.57343 8.93013 9.40156 9.80025 10.80207 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.012591 B = 0.002455 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.222028 B =11401.245398 C =12963.167567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.151 4.151 3 C -0.050 4.050 4 C 0.147 3.853 5 N -0.480 5.480 6 C 0.149 3.851 7 C -0.181 4.181 8 C 0.568 3.432 9 O -0.540 6.540 10 N -0.700 5.700 11 C 0.145 3.855 12 H 0.090 0.910 13 C -0.162 4.162 14 C 0.047 3.953 15 N -0.668 5.668 16 C 0.048 3.952 17 C 0.448 3.552 18 O -0.564 6.564 19 N -0.590 5.590 20 C -0.305 4.305 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C 0.005 3.995 29 H 0.227 0.773 30 H 0.166 0.834 31 H 0.166 0.834 32 H 0.405 0.595 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.353 0.647 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.216 6.148 -21.526 25.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.152 4.152 3 C -0.052 4.052 4 C -0.010 4.010 5 N -0.187 5.187 6 C -0.009 4.009 7 C -0.186 4.186 8 C 0.354 3.646 9 O -0.418 6.418 10 N -0.351 5.351 11 C 0.041 3.959 12 H 0.108 0.892 13 C -0.220 4.220 14 C -0.083 4.083 15 N -0.301 5.301 16 C -0.085 4.085 17 C 0.234 3.766 18 O -0.445 6.445 19 N -0.229 5.229 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.520 5.520 24 Si 0.707 3.293 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.021 4.021 29 H 0.244 0.756 30 H 0.183 0.817 31 H 0.183 0.817 32 H 0.242 0.758 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.173 0.827 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.867 5.254 -21.361 24.994 hybrid contribution 1.483 1.346 0.190 2.012 sum -10.383 6.599 -21.171 24.486 Atomic orbital electron populations 1.24926 0.95715 0.98238 0.98712 1.19577 0.91452 1.02267 1.01894 1.16845 0.88205 0.94680 1.05485 1.23181 0.89711 0.97060 0.91083 1.67753 1.07544 1.30274 1.13133 1.23173 1.00731 0.86628 0.90357 1.20925 0.94662 0.95434 1.07576 1.17881 0.82309 0.87884 0.76516 1.90773 1.71392 1.29705 1.49962 1.45724 1.05209 1.11222 1.72931 1.20997 0.91141 0.86536 0.97273 0.89236 1.22147 1.02645 1.00721 0.96536 1.22332 0.95428 0.97291 0.93273 1.60069 1.15364 1.48089 1.06549 1.21715 0.91272 0.99074 0.96422 1.19697 0.85603 0.85147 0.86170 1.90582 1.23026 1.60144 1.70783 1.42205 1.06523 1.51164 1.23052 1.19428 0.97157 1.29828 0.96979 0.86302 1.25052 0.98311 0.96983 0.95867 1.69621 1.31498 1.36539 1.14387 0.86661 0.84732 0.79060 0.78855 1.19679 1.20157 1.19489 1.21787 0.92426 0.98357 0.89561 0.75595 0.81715 0.81721 0.75828 0.91423 0.92181 0.91781 0.90275 0.93618 0.82722 0.89404 0.93666 0.79713 0.91590 0.83119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 19.25 29.55 0.57 -0.59 16 2 C -0.15 -1.44 13.27 -38.84 -0.52 -1.96 16 3 C -0.05 -0.52 5.73 -106.91 -0.61 -1.13 16 4 C 0.15 1.48 10.91 -17.06 -0.19 1.29 16 5 N -0.48 -5.50 10.33 -12.59 -0.13 -5.63 16 6 C 0.15 1.60 10.70 -17.09 -0.18 1.41 16 7 C -0.18 -2.07 5.88 -104.87 -0.62 -2.69 16 8 C 0.57 7.10 7.75 -12.32 -0.10 7.01 16 9 O -0.54 -8.30 16.08 5.32 0.09 -8.21 16 10 N -0.70 -7.30 4.75 -54.74 -0.26 -7.56 16 11 C 0.15 1.42 2.81 -67.93 -0.19 1.23 16 12 H 0.09 1.04 7.58 -51.93 -0.39 0.64 16 13 C -0.16 -1.29 9.48 37.16 0.35 -0.93 16 14 C 0.05 0.45 5.24 -3.83 -0.02 0.43 16 15 N -0.67 -9.18 5.85 -115.06 -0.67 -9.86 16 16 C 0.05 0.73 6.17 -4.97 -0.03 0.70 16 17 C 0.45 9.84 7.82 -10.99 -0.09 9.75 16 18 O -0.56 -14.86 15.78 5.54 0.09 -14.77 16 19 N -0.59 -13.75 5.09 -10.96 -0.06 -13.81 16 20 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16 21 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.65 13.96 55.50 0.77 -24.87 16 24 Si 0.88 19.12 27.74 -169.99 -4.71 14.41 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 28 C 0.00 0.05 9.44 -38.46 -0.36 -0.31 16 29 H 0.23 0.73 7.80 -54.09 -0.42 0.31 16 30 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.17 1.41 6.41 -52.49 -0.34 1.08 16 32 H 0.41 3.69 6.66 -40.82 -0.27 3.42 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.35 5.42 8.43 -39.29 -0.33 5.09 16 39 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.37 7.52 5.76 -40.82 -0.24 7.29 16 42 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 43 H 0.15 1.64 7.73 -52.49 -0.41 1.23 16 LS Contribution 381.54 15.07 5.75 5.75 Total: -1.00 -35.64 381.54 -6.70 -42.34 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -5.33 Total: 15.70 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -2.23 Total: 6.51 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -0.34 Total: -61.72 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: 0.17 Total: -22.98 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.71 Total: 14.41 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.64 -6.70 -42.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699378559.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.967 kcal (2) G-P(sol) polarization free energy of solvation -35.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds