Wall clock time and date at job start Tue Mar 31 2020 05:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46831 * 124.25791 * 3 2 1 5 5 C 1.34783 * 119.99809 * 271.10772 * 4 3 2 6 6 O 1.21589 * 120.00365 * 185.74944 * 5 4 3 7 7 C 1.47574 * 119.99720 * 5.75686 * 5 4 3 8 8 C 1.38048 * 119.72605 * 186.25623 * 7 5 4 9 9 N 1.34882 * 119.94763 * 179.74138 * 8 7 5 10 10 H 0.97002 * 120.30834 * 180.23318 * 9 8 7 11 11 C 1.34957 * 119.38386 * 0.53123 * 9 8 7 12 12 O 1.21860 * 120.26958 * 179.70357 * 11 9 8 13 13 C 1.41791 * 119.45875 * 359.71595 * 11 9 8 14 14 N 1.30603 * 120.03231 * 0.02793 * 13 11 9 15 15 C 1.46498 * 120.00642 * 91.11363 * 4 3 2 16 16 C 1.53070 * 109.45241 * 119.78220 * 15 4 3 17 17 C 1.53192 * 109.29460 * 181.24449 * 16 15 4 18 18 N 1.46923 * 108.89426 * 305.58382 * 17 16 15 19 19 C 1.36939 * 120.63116 * 233.51141 * 18 17 16 20 20 H 1.07998 * 119.99784 * 150.57659 * 19 18 17 21 21 C 1.38812 * 120.00259 * 330.58197 * 19 18 17 22 22 N 1.31618 * 120.00442 * 162.62653 * 21 19 18 23 23 Si 1.86807 * 119.99743 * 342.62713 * 21 19 18 24 24 H 1.48505 * 109.47350 * 95.14189 * 23 21 19 25 25 H 1.48499 * 109.47128 * 215.14240 * 23 21 19 26 26 H 1.48501 * 109.47239 * 335.14236 * 23 21 19 27 27 C 1.46921 * 118.74000 * 53.53310 * 18 17 16 28 28 C 1.53031 * 109.46274 * 239.99833 * 15 4 3 29 29 H 4.40633 * 5.51520 * 180.02562 * 4 1 2 30 30 H 1.08994 * 109.47569 * 4.25167 * 3 2 1 31 31 H 1.08998 * 109.46507 * 244.25146 * 3 2 1 32 32 H 1.07994 * 120.02623 * 359.97438 * 8 7 5 33 33 H 1.07996 * 119.98007 * 180.02562 * 13 11 9 34 34 H 1.09000 * 109.45624 * 359.97438 * 15 4 3 35 35 H 1.09001 * 109.39074 * 61.37242 * 16 15 4 36 36 H 1.09003 * 109.62949 * 301.26331 * 16 15 4 37 37 H 1.08997 * 109.58758 * 185.72079 * 17 16 15 38 38 H 1.09003 * 109.58538 * 65.43888 * 17 16 15 39 39 H 0.96999 * 119.99726 * 179.97438 * 22 21 19 40 40 H 1.09005 * 109.58414 * 66.18317 * 27 18 17 41 41 H 1.08998 * 109.58969 * 186.46130 * 27 18 17 42 42 H 1.09004 * 109.49870 * 58.65756 * 28 15 4 43 43 H 1.09000 * 109.49854 * 298.56572 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.7784 -1.1416 5 6 3.3375 0.1758 -2.3299 6 8 3.8403 0.7951 -3.2475 7 6 2.9500 -1.2358 -2.5173 8 6 3.2773 -1.8855 -3.6905 9 7 2.9299 -3.1772 -3.8644 10 1 3.1603 -3.6398 -4.6853 11 6 2.2535 -3.8182 -2.8882 12 8 1.9269 -4.9835 -3.0305 13 6 1.9259 -3.1245 -1.6957 14 7 2.2776 -1.8754 -1.5485 15 6 3.4007 2.2111 -0.9917 16 6 4.8748 2.4896 -1.2957 17 6 5.1569 3.9836 -1.1078 18 7 4.2126 4.7531 -1.9292 19 6 4.6649 5.6910 -2.8185 20 1 4.0983 5.9048 -3.7126 21 6 5.8518 6.3669 -2.5707 22 7 6.4647 7.0006 -3.5480 23 14 6.5791 6.3772 -0.8501 24 1 7.5881 5.2939 -0.7326 25 1 7.2283 7.6881 -0.5949 26 1 5.4991 6.1577 0.1452 27 6 2.7737 4.4975 -1.7780 28 6 2.5172 2.9985 -1.9619 29 1 -1.0501 0.0001 0.0002 30 1 3.0099 -1.0239 -0.0762 31 1 3.0090 0.4473 0.9256 32 1 3.8145 -1.3612 -4.4669 33 1 1.3852 -3.6294 -0.9089 34 1 3.1792 2.5166 0.0309 35 1 5.0920 2.2051 -2.3253 36 1 5.5039 1.9125 -0.6179 37 1 6.1774 4.2049 -1.4201 38 1 5.0299 4.2502 -0.0585 39 1 7.2939 7.4732 -3.3747 40 1 2.4506 4.8042 -0.7831 41 1 2.2215 5.0599 -2.5309 42 1 1.4688 2.7810 -1.7575 43 1 2.7557 2.7115 -2.9860 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699784385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:14 Heat of formation + Delta-G solvation = 87.512529 kcal Electronic energy + Delta-G solvation = -28667.680205 eV Core-core repulsion = 24717.362918 eV Total energy + Delta-G solvation = -3950.317287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.21831 -40.23441 -38.08057 -37.17974 -36.25332 -35.31318 -33.14650 -32.09026 -31.05050 -30.32185 -30.00678 -27.01009 -26.00579 -25.49657 -24.23472 -22.84415 -22.36073 -20.96073 -19.92523 -18.88197 -18.65253 -18.08064 -17.30095 -16.73602 -16.48438 -16.41045 -15.60654 -15.39402 -15.22402 -14.93365 -14.51666 -14.14060 -13.77785 -13.71013 -13.59675 -13.40227 -13.12853 -12.96884 -12.79143 -12.27547 -12.25693 -11.92383 -11.73018 -11.72458 -11.17595 -10.81253 -10.52634 -10.39156 -10.31704 -10.11933 -10.05575 -9.92927 -9.55022 -9.44946 -9.40119 -8.82308 -8.60339 -8.51861 -6.88227 -5.87985 -3.26421 0.02414 0.81818 2.03097 2.48231 2.61995 2.94891 3.23484 3.35686 3.36152 3.51071 3.53636 3.75426 3.76595 4.24185 4.45472 4.52974 4.57831 4.78572 5.03146 5.13106 5.21453 5.34670 5.40505 5.49306 5.65088 5.66588 5.74197 5.88073 5.95255 5.98473 6.08495 6.14766 6.23702 6.33687 6.46858 6.67019 6.67979 6.76252 6.90565 7.00283 7.07564 7.20658 7.43742 7.69580 8.04977 8.14386 8.40417 9.00791 9.78254 10.16502 11.28331 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.020697 B = 0.003281 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.558133 B = 8531.447217 C = 9169.472124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.169 4.169 3 C 0.218 3.782 4 N -0.590 5.590 5 C 0.587 3.413 6 O -0.516 6.516 7 C -0.077 4.077 8 C 0.178 3.822 9 N -0.586 5.586 10 H 0.426 0.574 11 C 0.478 3.522 12 O -0.525 6.525 13 C 0.034 3.966 14 N -0.360 5.360 15 C 0.160 3.840 16 C -0.150 4.150 17 C 0.130 3.870 18 N -0.604 5.604 19 C -0.254 4.254 20 H 0.084 0.916 21 C 0.021 3.979 22 N -0.913 5.913 23 Si 0.886 3.114 24 H -0.290 1.290 25 H -0.305 1.305 26 H -0.268 1.268 27 C 0.154 3.846 28 C -0.146 4.146 29 H 0.210 0.790 30 H 0.123 0.877 31 H 0.091 0.909 32 H 0.192 0.808 33 H 0.192 0.808 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.261 0.739 40 H 0.021 0.979 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.031 -21.292 5.520 23.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.171 4.171 3 C 0.096 3.904 4 N -0.321 5.321 5 C 0.373 3.627 6 O -0.392 6.392 7 C -0.200 4.200 8 C 0.041 3.959 9 N -0.219 5.219 10 H 0.266 0.734 11 C 0.273 3.727 12 O -0.400 6.400 13 C -0.156 4.156 14 N -0.076 5.076 15 C 0.058 3.942 16 C -0.190 4.190 17 C 0.004 3.996 18 N -0.328 5.328 19 C -0.383 4.383 20 H 0.102 0.898 21 C -0.177 4.177 22 N -0.556 5.556 23 Si 0.717 3.283 24 H -0.217 1.217 25 H -0.233 1.233 26 H -0.193 1.193 27 C 0.028 3.972 28 C -0.186 4.186 29 H 0.227 0.773 30 H 0.140 0.860 31 H 0.109 0.891 32 H 0.209 0.791 33 H 0.209 0.791 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.039 0.961 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.950 -20.929 5.636 23.450 hybrid contribution 0.483 -0.623 -0.120 0.797 sum -8.467 -21.552 5.516 23.804 Atomic orbital electron populations 1.24752 0.95772 1.02005 1.00475 1.23320 0.94570 0.99107 1.00069 1.18833 0.84185 0.98468 0.88937 1.48017 1.64243 1.10045 1.09772 1.17243 0.78565 0.83923 0.82972 1.90867 1.43202 1.64372 1.40760 1.20605 1.09422 0.97482 0.92523 1.23268 0.90776 0.83284 0.98535 1.43702 1.46219 1.11349 1.20601 0.73418 1.18809 0.79844 0.88338 0.85674 1.91006 1.53291 1.15677 1.80039 1.24832 1.02896 0.90955 0.96898 1.68269 1.03366 1.08461 1.27512 1.21187 0.96485 0.76775 0.99734 1.22529 0.93805 0.98702 1.03952 1.21318 0.95066 0.89124 0.94063 1.44323 0.99927 1.42204 1.46319 1.18927 1.06999 1.12889 0.99482 0.89819 1.25321 0.97740 0.97412 0.97220 1.69812 1.17748 1.37301 1.30769 0.86894 0.78753 0.75623 0.87074 1.21744 1.23328 1.19299 1.20855 0.85752 0.92006 0.98602 1.22411 0.97283 0.97752 1.01185 0.77290 0.85954 0.89126 0.79078 0.79120 0.90048 0.88977 0.93008 0.90998 0.95767 0.92870 0.96106 0.91668 0.92973 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.17 19.25 29.55 0.57 -1.60 16 2 C -0.17 -1.87 12.05 -37.12 -0.45 -2.32 16 3 C 0.22 2.27 5.44 -6.83 -0.04 2.24 16 4 N -0.59 -7.82 2.38 -170.57 -0.41 -8.23 16 5 C 0.59 8.01 7.03 -12.45 -0.09 7.93 16 6 O -0.52 -8.68 12.58 5.29 0.07 -8.61 16 7 C -0.08 -0.79 6.52 -83.11 -0.54 -1.33 16 8 C 0.18 1.31 10.77 -16.28 -0.18 1.14 16 9 N -0.59 -3.69 5.28 -14.19 -0.08 -3.76 16 10 H 0.43 1.53 8.92 -40.82 -0.36 1.17 16 11 C 0.48 4.22 7.74 -14.82 -0.11 4.10 16 12 O -0.52 -6.27 17.95 5.05 0.09 -6.18 16 13 C 0.03 0.27 11.23 -16.72 -0.19 0.08 16 14 N -0.36 -3.36 5.03 -9.34 -0.05 -3.40 16 15 C 0.16 2.51 2.50 -67.88 -0.17 2.34 16 16 C -0.15 -2.73 5.28 -26.60 -0.14 -2.87 16 17 C 0.13 2.86 4.16 -3.71 -0.02 2.84 16 18 N -0.60 -14.57 2.76 -172.33 -0.47 -15.04 16 19 C -0.25 -7.24 10.04 -15.06 -0.15 -7.40 16 20 H 0.08 2.56 8.06 -52.49 -0.42 2.13 16 21 C 0.02 0.63 5.28 -17.43 -0.09 0.54 16 22 N -0.91 -28.43 13.97 55.49 0.78 -27.65 16 23 Si 0.89 22.55 24.34 -169.99 -4.14 18.41 16 24 H -0.29 -7.14 6.76 56.52 0.38 -6.76 16 25 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 26 H -0.27 -6.59 6.26 56.52 0.35 -6.24 16 27 C 0.15 3.10 6.52 -3.72 -0.02 3.07 16 28 C -0.15 -2.55 5.27 -26.62 -0.14 -2.69 16 29 H 0.21 1.55 7.80 -54.08 -0.42 1.12 16 30 H 0.12 1.14 5.43 -51.93 -0.28 0.86 16 31 H 0.09 0.81 7.90 -51.93 -0.41 0.40 16 32 H 0.19 1.11 7.59 -52.49 -0.40 0.71 16 33 H 0.19 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.08 1.19 7.78 -51.93 -0.40 0.78 16 35 H 0.09 1.90 6.03 -51.93 -0.31 1.59 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.74 4.61 -51.93 -0.24 1.50 16 38 H 0.02 0.52 6.82 -51.93 -0.35 0.16 16 39 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 1.32 7.93 -51.93 -0.41 0.91 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.08 1.63 6.41 -51.93 -0.33 1.30 16 LS Contribution 349.57 15.07 5.27 5.27 Total: -1.00 -36.20 349.57 -5.94 -42.14 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -5.25 Total: 0.99 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -1.76 Total: 6.07 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: -0.23 Total: -58.09 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.16 Total: -14.79 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.14 Total: 18.41 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.20 -5.94 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699784385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.654 kcal (2) G-P(sol) polarization free energy of solvation -36.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds