Wall clock time and date at job start Tue Mar 31 2020 04:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36331 * 119.74306 * 2 1 4 4 C 1.47527 * 120.16652 * 0.02562 * 3 2 1 5 5 O 1.21594 * 119.99791 * 352.97100 * 4 3 2 6 6 N 1.34774 * 119.99592 * 172.96831 * 4 3 2 7 7 C 1.46502 * 119.99683 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.46950 * 180.02562 * 7 6 4 9 9 O 1.42906 * 113.28374 * 313.06456 * 8 7 6 10 10 C 1.53499 * 114.20500 * 180.02562 * 8 7 6 11 11 N 1.47066 * 87.98227 * 220.34291 * 10 8 7 12 12 C 1.36944 * 136.05846 * 207.07743 * 11 10 8 13 13 H 1.08002 * 119.99288 * 9.05062 * 12 11 10 14 14 C 1.38807 * 120.00286 * 189.04710 * 12 11 10 15 15 N 1.31618 * 119.99959 * 18.68570 * 14 12 11 16 16 Si 1.86802 * 120.00310 * 198.41020 * 14 12 11 17 17 H 1.48505 * 109.46564 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47326 * 119.99835 * 16 14 12 19 19 H 1.48494 * 109.47079 * 240.00232 * 16 14 12 20 20 C 1.47063 * 87.88579 * 27.34109 * 11 10 8 21 21 C 1.46501 * 119.66284 * 179.74771 * 3 2 1 22 22 C 1.35527 * 119.05051 * 0.25162 * 21 3 2 23 23 C 1.41228 * 119.42577 * 0.02562 * 22 21 3 24 24 C 1.37910 * 132.97210 * 180.02562 * 23 22 21 25 25 N 1.33453 * 107.66232 * 179.97438 * 24 23 22 26 26 C 1.30752 * 109.93313 * 359.97438 * 25 24 23 27 27 N 1.35921 * 109.20962 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.47304 * 82.86885 * 1 2 3 29 29 H 1.09005 * 109.47146 * 202.86121 * 1 2 3 30 30 H 1.08996 * 109.47643 * 322.86663 * 1 2 3 31 31 H 0.96995 * 120.00155 * 359.97438 * 6 4 3 32 32 H 1.09004 * 109.47293 * 60.00449 * 7 6 4 33 33 H 1.09001 * 109.47126 * 300.00174 * 7 6 4 34 34 H 0.96701 * 113.99357 * 46.93816 * 9 8 7 35 35 H 1.08998 * 113.47101 * 105.56637 * 10 8 7 36 36 H 1.08999 * 113.51800 * 335.12912 * 10 8 7 37 37 H 0.97008 * 120.00204 * 5.47788 * 15 14 12 38 38 H 1.09006 * 113.46820 * 87.43919 * 20 11 10 39 39 H 1.09005 * 113.46800 * 217.87287 * 20 11 10 40 40 H 1.08003 * 120.47060 * 180.27187 * 21 3 2 41 41 H 1.08001 * 120.28783 * 179.97438 * 22 21 3 42 42 H 1.07993 * 126.17068 * 359.92575 * 24 23 22 43 43 H 1.07994 * 125.39431 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1834 1.1837 0.0000 4 6 1.4437 2.4602 0.0006 5 8 0.2346 2.4622 -0.1278 6 7 2.1083 3.6239 0.1435 7 6 1.3737 4.8915 0.1446 8 6 2.3569 6.0505 0.3203 9 8 3.2998 5.8368 1.3727 10 6 1.6987 7.4371 0.3375 11 7 2.8255 7.9247 -0.4721 12 6 3.4576 9.1248 -0.6607 13 1 3.2219 9.9650 -0.0244 14 6 4.4011 9.2613 -1.6696 15 7 4.4339 8.3966 -2.6614 16 14 5.6195 10.6765 -1.6239 17 1 5.3710 11.5046 -0.4165 18 1 7.0025 10.1378 -1.5779 19 1 5.4538 11.5118 -2.8404 20 6 2.9705 6.5578 -0.9950 21 6 3.6483 1.1817 0.0056 22 6 4.3048 -0.0040 0.0055 23 6 3.5647 -1.2068 -0.0005 24 6 3.9315 -2.5363 -0.0018 25 7 2.8134 -3.2648 -0.0079 26 6 1.7689 -2.4783 -0.0101 27 7 2.1837 -1.1839 -0.0059 28 1 -0.3634 0.1276 -1.0197 29 1 -0.3634 -0.9470 0.3993 30 1 -0.3634 0.8192 0.6203 31 1 3.0728 3.6222 0.2463 32 1 0.6567 4.8952 0.9656 33 1 0.8438 5.0052 -0.8011 34 1 3.7125 4.9624 1.3594 35 1 1.6527 7.8835 1.3308 36 1 0.7424 7.4711 -0.1845 37 1 3.7505 7.7116 -2.7305 38 1 2.3495 6.3592 -1.8687 39 1 4.0080 6.2552 -1.1371 40 1 4.1973 2.1118 0.0101 41 1 5.3845 -0.0288 0.0092 42 1 4.9414 -2.9188 0.0009 43 1 0.7397 -2.8053 -0.0153 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754769497.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:31 Heat of formation + Delta-G solvation = 77.842939 kcal Electronic energy + Delta-G solvation = -27640.179308 eV Core-core repulsion = 23689.442716 eV Total energy + Delta-G solvation = -3950.736592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.15587 -40.39481 -39.17345 -37.27954 -35.50037 -34.69410 -33.94207 -32.29194 -31.90413 -29.49475 -28.65243 -27.65987 -26.06161 -25.08759 -23.98964 -23.07036 -22.05450 -21.59772 -20.89832 -19.60532 -18.75223 -17.98720 -17.40413 -16.75022 -16.47995 -16.22241 -15.89819 -15.52134 -15.20061 -14.76302 -14.45798 -14.27883 -13.97838 -13.88978 -13.81669 -13.69454 -13.40655 -13.37924 -13.08525 -12.76706 -12.69444 -12.16484 -11.92447 -11.87156 -11.27589 -11.03119 -10.77672 -10.74504 -10.69233 -10.16760 -10.10357 -10.02424 -9.67772 -9.56484 -9.39979 -9.12925 -8.69485 -7.91043 -7.11031 -6.18555 -3.20606 0.24067 0.63429 2.01584 2.33380 2.75851 2.92142 3.16888 3.46591 3.51607 3.63139 3.87317 4.12308 4.18991 4.26258 4.32632 4.36548 4.41916 4.51512 4.73967 4.86562 4.97485 5.04055 5.10977 5.13441 5.22263 5.31363 5.43946 5.51141 5.52046 5.71470 5.74129 5.82442 6.06011 6.08478 6.15896 6.17700 6.25877 6.33448 6.53800 6.62180 6.70959 7.15462 7.18886 7.45259 7.80916 7.91643 8.24989 8.84138 9.69017 10.39364 11.22397 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.021761 B = 0.002481 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.417215 B =11281.766888 C =12078.307351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.168 3.832 3 C -0.167 4.167 4 C 0.572 3.428 5 O -0.532 6.532 6 N -0.715 5.715 7 C 0.108 3.892 8 C 0.065 3.935 9 O -0.518 6.518 10 C 0.135 3.865 11 N -0.606 5.606 12 C -0.311 4.311 13 H 0.076 0.924 14 C -0.033 4.033 15 N -0.933 5.933 16 Si 1.082 2.918 17 H -0.292 1.292 18 H -0.289 1.289 19 H -0.293 1.293 20 C 0.113 3.887 21 C -0.098 4.098 22 C -0.082 4.082 23 C 0.009 3.991 24 C -0.019 4.019 25 N -0.451 5.451 26 C 0.152 3.848 27 N -0.376 5.376 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.120 0.880 31 H 0.398 0.602 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.360 0.640 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.264 0.736 38 H 0.042 0.958 39 H 0.056 0.944 40 H 0.143 0.857 41 H 0.153 0.847 42 H 0.183 0.817 43 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.498 -20.392 6.666 21.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.063 3.937 3 C -0.173 4.173 4 C 0.359 3.641 5 O -0.411 6.411 6 N -0.368 5.368 7 C -0.017 4.017 8 C 0.022 3.978 9 O -0.322 6.322 10 C 0.008 3.992 11 N -0.332 5.332 12 C -0.437 4.437 13 H 0.094 0.906 14 C -0.232 4.232 15 N -0.576 5.576 16 Si 0.911 3.089 17 H -0.218 1.218 18 H -0.216 1.216 19 H -0.220 1.220 20 C -0.014 4.014 21 C -0.119 4.119 22 C -0.102 4.102 23 C -0.099 4.099 24 C -0.171 4.171 25 N -0.165 5.165 26 C -0.123 4.123 27 N -0.050 5.050 28 H 0.113 0.887 29 H 0.085 0.915 30 H 0.138 0.862 31 H 0.234 0.766 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.206 0.794 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.161 0.839 41 H 0.171 0.829 42 H 0.200 0.800 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -4.233 -19.704 5.948 21.013 hybrid contribution -0.664 -0.361 0.467 0.889 sum -4.898 -20.066 6.415 21.628 Atomic orbital electron populations 1.21362 0.86288 1.04639 1.05715 1.20404 0.95479 0.82868 0.94963 1.20155 0.93748 0.92253 1.11145 1.17538 0.86728 0.83017 0.76777 1.90754 1.13484 1.86920 1.49907 1.45767 1.11163 1.05970 1.73894 1.22006 0.95148 0.81117 1.03400 1.23340 0.90151 0.93763 0.90500 1.86685 1.58609 1.37117 1.49763 1.22367 0.91925 0.88145 0.96780 1.45602 1.32257 1.05197 1.50133 1.19821 1.20525 0.87874 1.15522 0.90605 1.25852 1.01104 1.04130 0.92147 1.70730 1.37483 1.19913 1.29447 0.83261 0.76135 0.74389 0.75073 1.21810 1.21623 1.22023 1.22947 0.99426 0.86297 0.92688 1.22079 0.91459 0.98849 0.99494 1.20413 1.00367 0.88801 1.00597 1.19786 0.82334 0.97215 1.10528 1.22619 0.98164 0.86993 1.09356 1.69991 0.97923 1.32995 1.15542 1.25142 1.00674 0.76373 1.10123 1.43003 1.07630 1.06609 1.47711 0.88677 0.91518 0.86162 0.76622 0.90389 0.89750 0.79393 0.92687 0.93323 0.92443 0.94065 0.92586 0.83919 0.82907 0.79982 0.77036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 8.53 36.01 0.31 -0.72 16 2 C 0.17 1.66 6.83 -81.26 -0.55 1.11 16 3 C -0.17 -1.71 5.98 -103.47 -0.62 -2.32 16 4 C 0.57 6.73 7.67 -12.48 -0.10 6.63 16 5 O -0.53 -7.36 13.24 5.28 0.07 -7.29 16 6 N -0.72 -7.94 5.30 -61.35 -0.33 -8.27 16 7 C 0.11 1.44 5.42 -4.04 -0.02 1.41 16 8 C 0.07 1.10 1.74 -89.97 -0.16 0.95 16 9 O -0.52 -8.62 13.57 -35.23 -0.48 -9.10 16 10 C 0.13 2.69 8.10 -8.51 -0.07 2.62 16 11 N -0.61 -15.33 3.68 -184.59 -0.68 -16.01 16 12 C -0.31 -8.85 10.65 -15.06 -0.16 -9.01 16 13 H 0.08 2.13 7.90 -52.49 -0.41 1.72 16 14 C -0.03 -0.95 5.45 -17.43 -0.09 -1.05 16 15 N -0.93 -28.29 13.35 55.49 0.74 -27.55 16 16 Si 1.08 25.56 29.96 -169.99 -5.09 20.46 16 17 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 C 0.11 2.42 5.60 -8.38 -0.05 2.37 16 21 C -0.10 -0.83 9.71 -37.22 -0.36 -1.19 16 22 C -0.08 -0.67 10.09 -39.42 -0.40 -1.06 16 23 C 0.01 0.09 6.78 -84.02 -0.57 -0.48 16 24 C -0.02 -0.18 12.00 -16.97 -0.20 -0.39 16 25 N -0.45 -4.95 11.19 -13.78 -0.15 -5.10 16 26 C 0.15 1.41 12.09 -89.36 -1.08 0.33 16 27 N -0.38 -3.75 2.94 -57.74 -0.17 -3.92 16 28 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.39 7.16 -51.93 -0.37 0.02 16 30 H 0.12 1.17 5.81 -51.93 -0.30 0.87 16 31 H 0.40 3.62 5.09 -40.82 -0.21 3.41 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.08 1.18 7.89 -51.93 -0.41 0.77 16 34 H 0.36 4.18 7.20 45.56 0.33 4.51 16 35 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.90 8.10 -51.93 -0.42 0.48 16 37 H 0.26 7.89 5.94 -40.82 -0.24 7.65 16 38 H 0.04 0.89 7.76 -51.93 -0.40 0.48 16 39 H 0.06 1.30 7.99 -51.93 -0.41 0.89 16 40 H 0.14 0.89 6.63 -52.48 -0.35 0.54 16 41 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 42 H 0.18 1.26 8.06 -52.49 -0.42 0.83 16 43 H 0.21 1.19 7.56 -52.49 -0.40 0.79 16 LS Contribution 356.73 15.07 5.38 5.38 Total: -1.00 -36.76 356.73 -9.35 -46.11 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.51 Total: 6.08 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -4.12 Total: -0.80 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -0.59 Total: -60.85 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.41 Total: -16.39 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.09 Total: 20.46 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.76 -9.35 -46.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754769497.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.952 kcal (2) G-P(sol) polarization free energy of solvation -36.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds