Wall clock time and date at job start Tue Mar 31 2020 05:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99601 * 2 1 4 4 H 1.48509 * 109.47108 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47383 * 299.99710 * 3 2 1 6 6 H 1.48496 * 109.47362 * 60.00348 * 3 2 1 7 7 C 1.37877 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99888 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00407 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47356 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99883 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99936 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99881 * 179.97438 * 11 10 9 14 14 N 1.46902 * 109.46820 * 180.02562 * 13 11 10 15 15 C 1.46854 * 110.99624 * 170.00299 * 14 13 11 16 16 C 1.53036 * 109.52128 * 185.83509 * 15 14 13 17 17 C 1.53113 * 109.28178 * 300.82117 * 16 15 14 18 18 C 1.50703 * 109.52502 * 177.55819 * 17 16 15 19 19 O 1.21250 * 119.99733 * 335.12850 * 18 17 16 20 20 C 1.47164 * 119.99851 * 155.12745 * 18 17 16 21 21 C 1.39855 * 120.16680 * 180.02562 * 20 18 17 22 22 C 1.37890 * 119.82316 * 179.97438 * 21 20 18 23 23 C 1.38404 * 120.17220 * 359.97438 * 22 21 20 24 24 C 1.38409 * 120.34828 * 0.04376 * 23 22 21 25 25 C 1.37888 * 120.17293 * 359.95823 * 24 23 22 26 26 C 1.53122 * 109.21309 * 57.62052 * 17 16 15 27 27 C 1.46850 * 110.99978 * 294.20873 * 14 13 11 28 28 H 0.96989 * 120.00512 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46568 * 60.00515 * 9 7 2 30 30 H 1.08999 * 109.47091 * 300.00803 * 9 7 2 31 31 H 0.97004 * 119.99749 * 0.02562 * 10 9 7 32 32 H 1.09003 * 109.46963 * 60.00330 * 13 11 10 33 33 H 1.08994 * 109.47133 * 299.99972 * 13 11 10 34 34 H 1.08999 * 109.45991 * 65.82353 * 15 14 13 35 35 H 1.08995 * 109.45120 * 305.85345 * 15 14 13 36 36 H 1.08998 * 109.50065 * 180.87610 * 16 15 14 37 37 H 1.09003 * 109.50108 * 60.76143 * 16 15 14 38 38 H 1.09002 * 109.52446 * 297.68665 * 17 16 15 39 39 H 1.07999 * 120.09085 * 359.69867 * 21 20 18 40 40 H 1.08000 * 119.91186 * 180.02562 * 22 21 20 41 41 H 1.07998 * 119.82754 * 180.02562 * 23 22 21 42 42 H 1.07996 * 119.91489 * 179.97438 * 24 23 22 43 43 H 1.07996 * 120.08508 * 179.97438 * 25 24 23 44 44 H 1.09006 * 109.50057 * 62.31991 * 26 17 16 45 45 H 1.09003 * 109.50616 * 182.43218 * 26 17 16 46 46 H 1.09001 * 109.45925 * 294.18038 * 27 14 13 47 47 H 1.09000 * 109.45976 * 54.15968 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 7 2.2032 -3.6127 -0.0005 11 6 1.7540 -4.8834 -0.0011 12 8 0.5616 -5.1050 -0.0020 13 6 2.7333 -6.0288 -0.0016 14 7 1.9988 -7.3010 -0.0028 15 6 2.9051 -8.4316 -0.2414 16 6 2.0903 -9.7195 -0.3805 17 6 1.2843 -9.9489 0.9009 18 6 0.4341 -11.1836 0.7469 19 8 0.1050 -11.5592 -0.3580 20 6 0.0032 -11.9335 1.9377 21 6 -0.7855 -13.0801 1.7988 22 6 -1.1847 -13.7776 2.9193 23 6 -0.8066 -13.3460 4.1788 24 6 -0.0265 -12.2120 4.3244 25 6 0.3808 -11.5036 3.2138 26 6 0.3844 -8.7362 1.1541 27 6 1.2485 -7.4765 1.2473 28 1 -0.4850 0.8399 -0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 0.6247 -2.5571 0.8896 31 1 3.1569 -3.4353 -0.0002 32 1 3.3600 -5.9714 0.8884 33 1 3.3599 -5.9706 -0.8916 34 1 3.5950 -8.5272 0.5971 35 1 3.4690 -8.2576 -1.1577 36 1 2.7643 -10.5608 -0.5421 37 1 1.4098 -9.6299 -1.2273 38 1 1.9659 -10.0785 1.7416 39 1 -1.0847 -13.4158 0.8169 40 1 -1.7934 -14.6634 2.8137 41 1 -1.1221 -13.8968 5.0525 42 1 0.2642 -11.8813 5.3106 43 1 0.9891 -10.6188 3.3291 44 1 -0.3237 -8.6307 0.3321 45 1 -0.1597 -8.8755 2.0883 46 1 1.9463 -7.5766 2.0787 47 1 0.6092 -6.6092 1.4120 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014809264.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:53 Heat of formation + Delta-G solvation = -50.064062 kcal Electronic energy + Delta-G solvation = -27216.938944 eV Core-core repulsion = 23364.196232 eV Total energy + Delta-G solvation = -3852.742712 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.69941 -39.39009 -38.56635 -37.57792 -34.22207 -33.70731 -32.31884 -31.70727 -31.33937 -30.84130 -28.55096 -26.78104 -24.99543 -23.41054 -23.26455 -22.73241 -22.13333 -20.44507 -19.63222 -19.45829 -17.70793 -17.08269 -16.45368 -16.04203 -15.74669 -15.64019 -15.36580 -14.96600 -14.82193 -14.74686 -14.45822 -14.31934 -14.01852 -13.88257 -13.74875 -13.30257 -13.08922 -12.77927 -12.63658 -12.38289 -12.10589 -12.04212 -11.85350 -11.63669 -11.43953 -11.36196 -11.20837 -10.95031 -10.91695 -10.78280 -10.51972 -10.30164 -9.73004 -9.40679 -9.37575 -9.35993 -8.97365 -8.73309 -8.19627 -7.84163 -6.16752 -4.23590 0.31663 0.96495 2.13181 3.23078 3.30120 3.33026 3.39981 3.43067 3.64066 3.68696 4.25041 4.38399 4.41096 4.51408 4.53599 4.63514 4.71276 4.80916 4.98829 5.01130 5.11682 5.17848 5.19334 5.25959 5.30923 5.39809 5.44823 5.48435 5.53331 5.57353 5.60220 5.64908 5.73670 5.83338 5.91626 6.01901 6.03982 6.09338 6.17417 6.26853 6.47018 7.00104 7.15561 7.29071 7.33824 7.46600 7.53036 7.68271 7.97561 8.64933 8.79795 9.14121 9.43344 10.93469 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.024297 B = 0.001944 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.128867 B =14399.937124 C =14913.800098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.715 5.715 11 C 0.498 3.502 12 O -0.538 6.538 13 C 0.036 3.964 14 N -0.519 5.519 15 C 0.057 3.943 16 C -0.102 4.102 17 C -0.132 4.132 18 C 0.403 3.597 19 O -0.447 6.447 20 C -0.167 4.167 21 C -0.064 4.064 22 C -0.134 4.134 23 C -0.091 4.091 24 C -0.133 4.133 25 C -0.072 4.072 26 C -0.099 4.099 27 C 0.054 3.946 28 H 0.265 0.735 29 H 0.027 0.973 30 H 0.026 0.974 31 H 0.389 0.611 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.032 0.968 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.134 0.866 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.027 0.973 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.918 -26.911 8.040 28.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.365 5.365 11 C 0.282 3.718 12 O -0.416 6.416 13 C -0.095 4.095 14 N -0.244 5.244 15 C -0.070 4.070 16 C -0.140 4.140 17 C -0.151 4.151 18 C 0.280 3.720 19 O -0.321 6.321 20 C -0.168 4.168 21 C -0.082 4.082 22 C -0.152 4.152 23 C -0.109 4.109 24 C -0.151 4.151 25 C -0.090 4.090 26 C -0.137 4.137 27 C -0.074 4.074 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.222 0.778 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.050 0.950 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.151 0.849 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.045 0.955 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.367 -27.099 7.060 28.205 hybrid contribution 1.499 1.015 0.820 1.987 sum 4.866 -26.084 7.879 27.679 Atomic orbital electron populations 1.69981 1.06095 1.27185 1.48984 1.24961 0.94918 0.99467 0.94746 0.86365 0.79811 0.82997 0.77745 1.19656 1.20795 1.20826 1.21273 0.93292 0.90492 1.53058 0.91871 1.19080 0.88281 0.81919 0.97686 1.46459 1.11052 1.06124 1.72820 1.20306 0.89589 0.84076 0.77842 1.90629 1.16657 1.84494 1.49817 1.21997 0.95429 0.89531 1.02557 1.61528 1.26348 1.00366 1.36179 1.22099 0.93710 0.90445 1.00793 1.21480 0.98799 0.96468 0.97279 1.21751 0.98232 0.94397 1.00766 1.22520 0.77527 0.84401 0.87592 1.90512 1.47643 1.65707 1.28265 1.20603 1.02858 0.98353 0.94952 1.21468 0.94071 0.93043 0.99585 1.21178 1.01030 1.00591 0.92398 1.21449 0.95955 0.95914 0.97584 1.21189 0.99050 0.95919 0.98957 1.21549 0.97275 0.98730 0.91452 1.21494 0.97706 0.91690 1.02847 1.22251 0.96843 0.99432 0.88864 0.92505 0.95529 0.95648 0.77847 0.92491 0.88299 0.94962 0.90288 0.91391 0.89697 0.88961 0.84935 0.85419 0.85588 0.85296 0.84865 0.90089 0.91027 0.95480 0.87728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.06 13.29 55.43 0.74 -25.33 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 16 8 H 0.06 1.59 7.60 -52.48 -0.40 1.20 16 9 C 0.25 6.61 5.43 -5.19 -0.03 6.59 16 10 N -0.72 -14.77 5.55 -61.47 -0.34 -15.12 16 11 C 0.50 9.70 7.50 -10.99 -0.08 9.62 16 12 O -0.54 -12.66 14.33 5.56 0.08 -12.58 16 13 C 0.04 0.50 5.45 -4.97 -0.03 0.48 16 14 N -0.52 -7.20 4.40 -236.11 -1.04 -8.24 16 15 C 0.06 0.61 5.46 -3.83 -0.02 0.59 16 16 C -0.10 -1.08 4.96 -26.65 -0.13 -1.22 16 17 C -0.13 -1.32 1.88 -91.65 -0.17 -1.49 16 18 C 0.40 4.45 6.24 -30.69 -0.19 4.26 16 19 O -0.45 -6.23 16.04 5.58 0.09 -6.14 16 20 C -0.17 -1.59 5.87 -105.07 -0.62 -2.21 16 21 C -0.06 -0.57 9.60 -39.10 -0.38 -0.95 16 22 C -0.13 -0.94 10.03 -39.65 -0.40 -1.34 16 23 C -0.09 -0.57 10.04 -39.46 -0.40 -0.97 16 24 C -0.13 -0.87 10.03 -39.65 -0.40 -1.27 16 25 C -0.07 -0.55 9.37 -39.11 -0.37 -0.92 16 26 C -0.10 -1.16 5.36 -26.65 -0.14 -1.30 16 27 C 0.05 0.72 5.10 -3.83 -0.02 0.70 16 28 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.39 6.82 8.32 -40.82 -0.34 6.48 16 32 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 33 H 0.10 1.19 7.99 -51.93 -0.41 0.77 16 34 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.77 8.01 -51.93 -0.42 0.35 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.09 7.79 -51.93 -0.40 0.68 16 38 H 0.09 0.72 6.75 -51.93 -0.35 0.37 16 39 H 0.13 1.19 7.65 -52.49 -0.40 0.79 16 40 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 41 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 42 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.13 0.82 6.48 -52.49 -0.34 0.48 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.10 1.76 5.78 -51.93 -0.30 1.46 16 LS Contribution 385.47 15.07 5.81 5.81 Total: -1.00 -33.85 385.47 -10.62 -44.47 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -7.15 Total: 4.13 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -3.78 Total: -2.76 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.64 Total: -48.68 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.17 Total: -18.72 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.85 -10.62 -44.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014809264.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.594 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds