Wall clock time and date at job start Tue Mar 31 2020 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46496 * 119.99971 * 2 1 4 4 C 1.50706 * 109.47126 * 270.00194 * 3 2 1 5 5 H 1.08001 * 119.99862 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99786 * 180.02562 * 4 3 2 7 7 N 1.31506 * 120.00491 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99495 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47042 * 90.00148 * 8 6 4 10 10 H 1.48499 * 109.46931 * 209.99602 * 8 6 4 11 11 H 1.48497 * 109.47553 * 329.99620 * 8 6 4 12 12 C 1.34779 * 119.99606 * 179.97438 * 2 1 3 13 13 O 1.21284 * 119.99252 * 184.91268 * 12 2 1 14 14 C 1.50690 * 120.00434 * 4.91310 * 12 2 1 15 15 H 1.08999 * 109.87324 * 327.36301 * 14 12 2 16 16 C 1.54329 * 110.01296 * 88.45851 * 14 12 2 17 17 C 1.55150 * 102.94500 * 141.68081 * 16 14 12 18 18 C 1.55130 * 101.48842 * 324.33609 * 17 16 14 19 19 N 1.47017 * 109.88370 * 206.34191 * 14 12 2 20 20 C 1.34777 * 125.64948 * 61.45636 * 19 14 12 21 21 O 1.21283 * 119.99577 * 359.97438 * 20 19 14 22 22 C 1.50697 * 120.00339 * 180.02562 * 20 19 14 23 23 C 1.50698 * 109.46973 * 179.97438 * 22 20 19 24 24 C 1.38236 * 120.00425 * 90.00125 * 23 22 20 25 25 C 1.38233 * 120.00321 * 179.72458 * 24 23 22 26 26 C 1.38241 * 119.99893 * 0.27125 * 25 24 23 27 27 C 1.38235 * 119.99801 * 359.97438 * 26 25 24 28 28 C 1.38232 * 120.00282 * 359.95853 * 27 26 25 29 29 H 1.09000 * 109.46949 * 264.63286 * 1 2 3 30 30 H 1.08995 * 109.47012 * 24.63430 * 1 2 3 31 31 H 1.09002 * 109.47311 * 144.63502 * 1 2 3 32 32 H 1.08996 * 109.46988 * 29.99752 * 3 2 1 33 33 H 1.08996 * 109.46956 * 149.99931 * 3 2 1 34 34 H 0.96999 * 120.00446 * 180.02562 * 7 6 4 35 35 H 1.08997 * 110.72475 * 260.05141 * 16 14 12 36 36 H 1.09006 * 110.71472 * 23.32105 * 16 14 12 37 37 H 1.08996 * 111.00524 * 82.57355 * 17 16 14 38 38 H 1.09003 * 111.00976 * 206.38707 * 17 16 14 39 39 H 1.09002 * 110.49485 * 278.45342 * 18 17 16 40 40 H 1.08996 * 110.34677 * 156.05628 * 18 17 16 41 41 H 1.08995 * 109.47550 * 59.99794 * 22 20 19 42 42 H 1.09001 * 109.46681 * 299.99206 * 22 20 19 43 43 H 1.07998 * 119.99560 * 359.97438 * 24 23 22 44 44 H 1.08002 * 120.00328 * 180.24933 * 25 24 23 45 45 H 1.07997 * 119.99724 * 179.97438 * 26 25 24 46 46 H 1.08002 * 119.99829 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.00408 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0974 1.0962 -2.2418 6 6 3.1269 2.8774 -1.6728 7 7 3.5542 3.6175 -0.6732 8 14 3.4387 3.4163 -3.4339 9 1 2.3091 4.2596 -3.9010 10 1 4.6993 4.1988 -3.4963 11 1 3.5558 2.2190 -4.3046 12 6 2.1389 -1.1673 0.0005 13 8 3.3484 -1.1691 0.0905 14 6 1.3896 -2.4699 -0.1107 15 1 0.4181 -2.3813 0.3757 16 6 1.2008 -2.8456 -1.5956 17 6 1.3953 -4.3848 -1.5922 18 6 2.4934 -4.5551 -0.5097 19 7 2.1665 -3.5488 0.5170 20 6 2.5253 -3.6057 1.8149 21 8 2.2046 -2.7144 2.5723 22 6 3.3259 -4.7762 2.3247 23 6 3.5942 -4.5982 3.7969 24 6 2.7031 -5.0989 4.7275 25 6 2.9522 -4.9405 6.0780 26 6 4.0896 -4.2764 6.4978 27 6 4.9781 -3.7712 5.5672 28 6 4.7298 -3.9308 4.2167 29 1 -0.3633 -0.0961 1.0232 30 1 -0.3633 0.9341 -0.4283 31 1 -0.3634 -0.8380 -0.5948 32 1 1.6084 2.0283 0.5138 33 1 3.1499 1.1383 0.5138 34 1 4.0310 4.4434 -0.8505 35 1 0.1985 -2.5842 -1.9351 36 1 1.9569 -2.3626 -2.2146 37 1 0.4758 -4.8942 -1.3041 38 1 1.7468 -4.7364 -2.5622 39 1 3.4791 -4.3597 -0.9319 40 1 2.4539 -5.5578 -0.0842 41 1 4.2725 -4.8308 1.7872 42 1 2.7644 -5.6970 2.1662 43 1 1.8144 -5.6175 4.3995 44 1 2.2580 -5.3353 6.8051 45 1 4.2839 -4.1523 7.5529 46 1 5.8665 -3.2520 5.8952 47 1 5.4241 -3.5364 3.4896 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065554192.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:05 Heat of formation + Delta-G solvation = -36.255510 kcal Electronic energy + Delta-G solvation = -28658.621311 eV Core-core repulsion = 24806.477382 eV Total energy + Delta-G solvation = -3852.143928 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.50449 -39.31029 -38.13544 -36.88988 -34.70426 -33.00557 -32.58029 -31.55778 -30.88581 -29.80708 -27.72016 -27.37422 -25.72353 -24.05758 -22.80063 -22.58856 -21.74760 -21.14810 -19.65818 -18.09235 -17.19448 -16.91188 -16.76996 -16.45283 -15.64975 -15.53701 -15.16057 -15.05283 -14.52649 -14.31915 -14.18603 -13.93009 -13.53255 -13.40624 -13.07204 -12.97912 -12.80734 -12.53572 -12.26815 -12.23583 -12.09434 -11.94407 -11.79535 -11.46270 -11.39054 -11.14549 -11.10279 -11.01468 -10.91724 -10.85921 -10.52137 -10.13799 -9.73418 -9.59570 -9.18596 -8.89316 -8.72172 -8.41200 -8.29656 -7.54799 -6.00991 -4.06516 1.31658 1.42967 2.75414 2.99920 3.30303 3.36510 3.39714 3.50574 3.80694 4.08314 4.41399 4.45761 4.51530 4.61322 4.74273 4.84002 4.98424 4.99500 5.08921 5.14428 5.19098 5.22911 5.32482 5.34092 5.40459 5.50726 5.51949 5.63028 5.63410 5.69684 5.80518 5.83432 5.96856 6.00359 6.03938 6.10635 6.22745 6.32470 6.44065 6.50995 6.58803 6.99802 7.12911 7.52953 7.59383 7.61897 7.95601 8.27071 8.33809 8.50119 8.93436 9.16373 9.58335 11.06939 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013209 B = 0.003326 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.225097 B = 8417.027907 C = 9606.737879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.600 5.600 3 C 0.247 3.753 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.508 3.492 13 O -0.535 6.535 14 C 0.117 3.883 15 H 0.090 0.910 16 C -0.120 4.120 17 C -0.129 4.129 18 C 0.099 3.901 19 N -0.602 5.602 20 C 0.533 3.467 21 O -0.519 6.519 22 C -0.095 4.095 23 C -0.065 4.065 24 C -0.106 4.106 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.119 4.119 28 C -0.100 4.100 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.121 0.879 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 -22.229 5.018 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.332 5.332 3 C 0.127 3.873 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.292 3.708 13 O -0.411 6.411 14 C 0.010 3.990 15 H 0.108 0.892 16 C -0.158 4.158 17 C -0.167 4.167 18 C -0.024 4.024 19 N -0.338 5.338 20 C 0.321 3.679 21 O -0.393 6.393 22 C -0.134 4.134 23 C -0.065 4.065 24 C -0.124 4.124 25 C -0.141 4.141 26 C -0.140 4.140 27 C -0.137 4.137 28 C -0.118 4.118 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.420 -21.544 5.634 22.703 hybrid contribution 0.117 0.606 -1.051 1.219 sum -4.303 -20.939 4.583 21.862 Atomic orbital electron populations 1.21650 0.81639 1.02556 1.00210 1.48065 1.06035 1.07699 1.71393 1.19269 0.92676 0.78007 0.97313 1.21435 1.36512 1.06332 0.92227 0.92512 1.24951 0.95415 0.96432 0.97386 1.69941 1.38308 1.14266 1.30710 0.86498 0.77683 0.78559 0.84661 1.20636 1.21104 1.19940 1.20317 0.88143 0.84882 0.77428 1.90634 1.14072 1.86875 1.49537 1.21608 0.95166 0.87410 0.94821 0.89238 1.22577 1.03798 0.95982 0.93428 1.22805 0.98873 0.95927 0.99138 1.22413 0.99179 0.91826 0.88947 1.48227 1.55388 1.22300 1.07875 1.20104 0.79790 0.87782 0.80231 1.90765 1.54220 1.39210 1.55131 1.20629 1.01579 0.97508 0.93725 1.19291 0.95166 0.98559 0.93523 1.20931 0.98321 1.00142 0.93020 1.21058 0.97562 0.99851 0.95592 1.21125 0.94919 0.98603 0.99393 1.21120 0.99717 0.99778 0.93074 1.21060 0.97213 0.97432 0.96138 0.93742 0.90503 0.92853 0.95093 0.93893 0.92724 0.89306 0.89534 0.90364 0.89467 0.90824 0.90418 0.87928 0.88231 0.86410 0.86236 0.86285 0.86051 0.86041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.44 9.81 59.85 0.59 2.03 16 2 N -0.60 -13.78 2.86 -182.96 -0.52 -14.30 16 3 C 0.25 6.86 5.17 -5.19 -0.03 6.84 16 4 C -0.53 -15.26 9.39 -34.44 -0.32 -15.58 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -27.30 13.29 55.43 0.74 -26.56 16 8 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.51 11.43 6.00 -10.99 -0.07 11.37 16 13 O -0.53 -14.41 16.01 5.55 0.09 -14.32 16 14 C 0.12 1.91 2.36 -68.11 -0.16 1.75 16 15 H 0.09 1.37 6.69 -51.93 -0.35 1.02 16 16 C -0.12 -1.48 6.21 -24.90 -0.15 -1.64 16 17 C -0.13 -1.12 7.10 -24.47 -0.17 -1.29 16 18 C 0.10 1.02 6.70 -2.41 -0.02 1.00 16 19 N -0.60 -9.02 2.76 -164.19 -0.45 -9.47 16 20 C 0.53 8.78 7.43 -10.99 -0.08 8.70 16 21 O -0.52 -11.04 15.86 5.55 0.09 -10.95 16 22 C -0.09 -1.12 4.83 -29.04 -0.14 -1.26 16 23 C -0.06 -0.86 4.37 -104.62 -0.46 -1.32 16 24 C -0.11 -1.27 9.70 -39.58 -0.38 -1.66 16 25 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 26 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 27 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 28 C -0.10 -1.38 9.70 -39.58 -0.38 -1.76 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.32 8.03 -51.93 -0.42 0.90 16 31 H 0.05 0.73 6.11 -51.93 -0.32 0.42 16 32 H 0.03 0.87 8.07 -51.93 -0.42 0.46 16 33 H 0.04 1.37 7.36 -51.93 -0.38 0.99 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.09 0.91 7.78 -51.93 -0.40 0.50 16 36 H 0.09 1.27 7.85 -51.93 -0.41 0.86 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.55 7.48 -51.93 -0.39 0.16 16 41 H 0.10 1.08 8.09 -51.93 -0.42 0.66 16 42 H 0.10 0.83 7.80 -51.93 -0.40 0.43 16 43 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 47 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 390.25 15.07 5.88 5.88 Total: -1.00 -38.98 390.25 -9.53 -48.51 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.26 Total: 0.76 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -3.07 Total: 3.42 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.24 Total: -50.33 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: 0.18 Total: -25.27 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.98 -9.53 -48.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065554192.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.258 kcal (2) G-P(sol) polarization free energy of solvation -38.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds