Wall clock time and date at job start Tue Mar 31 2020 05:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34769 * 119.99799 * 2 1 4 4 O 1.21553 * 120.00428 * 0.02562 * 3 2 1 5 5 C 1.47873 * 120.00145 * 180.02562 * 3 2 1 6 6 C 1.39680 * 119.98048 * 180.02562 * 5 3 2 7 7 C 1.37645 * 120.02989 * 180.02562 * 6 5 3 8 8 C 1.39886 * 119.97215 * 359.97438 * 7 6 5 9 9 C 1.47259 * 120.02598 * 179.97438 * 8 7 6 10 10 C 1.34735 * 120.00314 * 179.97438 * 9 8 7 11 11 C 1.46614 * 120.00139 * 179.72444 * 10 9 8 12 12 O 1.21680 * 119.99890 * 354.73415 * 11 10 9 13 13 N 1.34779 * 120.00102 * 174.73210 * 11 10 9 14 14 C 1.46495 * 119.99922 * 4.74646 * 13 11 10 15 15 C 1.50700 * 109.47348 * 89.99950 * 14 13 11 16 16 H 1.08005 * 119.99446 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00434 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99864 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00190 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46910 * 60.00401 * 19 17 15 21 21 H 1.48496 * 109.47087 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47340 * 300.00318 * 19 17 15 23 23 C 1.46500 * 119.99961 * 184.74887 * 13 11 10 24 24 C 1.53001 * 109.47279 * 124.69162 * 23 13 11 25 25 C 1.53002 * 109.47026 * 244.69359 * 23 13 11 26 26 C 1.39885 * 119.95351 * 0.25355 * 8 7 6 27 27 C 1.37658 * 119.96957 * 359.48861 * 26 8 7 28 28 H 1.09004 * 109.47119 * 299.99850 * 1 2 3 29 29 H 1.09008 * 109.47420 * 59.99927 * 1 2 3 30 30 H 1.09003 * 109.47132 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99858 * 180.02562 * 2 1 3 32 32 H 1.08003 * 119.98059 * 359.97438 * 6 5 3 33 33 H 1.07998 * 120.01583 * 180.02562 * 7 6 5 34 34 H 1.08000 * 119.99997 * 0.02562 * 9 8 7 35 35 H 1.08000 * 119.99689 * 0.02562 * 10 9 8 36 36 H 1.09002 * 109.47444 * 210.00078 * 14 13 11 37 37 H 1.09001 * 109.46963 * 329.99935 * 14 13 11 38 38 H 0.97000 * 119.99897 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.47407 * 4.69129 * 23 13 11 40 40 H 1.09002 * 109.46928 * 59.99674 * 24 23 13 41 41 H 1.08998 * 109.46722 * 179.97438 * 24 23 13 42 42 H 1.09000 * 109.47241 * 300.00215 * 24 23 13 43 43 H 1.09005 * 109.47053 * 59.99822 * 25 23 13 44 44 H 1.08999 * 109.46975 * 179.97438 * 25 23 13 45 45 H 1.09002 * 109.46840 * 300.00118 * 25 23 13 46 46 H 1.08003 * 120.01584 * 179.74887 * 26 8 7 47 47 H 1.08002 * 119.98161 * 180.23489 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6176 1.1672 -0.0006 6 6 4.3155 2.3772 0.0000 7 6 5.6919 2.3785 -0.0011 8 6 6.3919 1.1673 -0.0022 9 6 7.8645 1.1673 -0.0039 10 6 8.5382 0.0005 -0.0044 11 6 10.0043 0.0005 -0.0122 12 8 10.6122 1.0496 -0.1149 13 7 10.6788 -1.1615 0.0944 14 6 9.9502 -2.4323 0.1134 15 6 9.7946 -2.9432 -1.2958 16 1 10.1985 -2.3780 -2.1228 17 6 9.1376 -4.1327 -1.5293 18 7 8.6462 -4.8212 -0.5222 19 14 8.9442 -4.7656 -3.2761 20 1 10.2854 -4.9724 -3.8790 21 1 8.2068 -6.0544 -3.2567 22 1 8.1871 -3.7736 -4.0811 23 6 12.1406 -1.1537 0.1914 24 6 12.5722 -1.9081 1.4506 25 6 12.7371 -1.8357 -1.0415 26 6 5.6920 -0.0438 -0.0075 27 6 4.3155 -0.0426 -0.0011 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9500 -0.8401 -0.0004 32 1 3.7748 3.3121 0.0004 33 1 6.2313 3.3141 -0.0003 34 1 8.4045 2.1026 -0.0039 35 1 7.9982 -0.9348 -0.0040 36 1 10.5052 -3.1606 0.7047 37 1 8.9656 -2.2799 0.5554 38 1 8.1837 -5.6578 -0.6865 39 1 12.4957 -0.1245 0.2448 40 1 12.2171 -2.9372 1.3972 41 1 13.6598 -1.9026 1.5224 42 1 12.1472 -1.4222 2.3289 43 1 12.4296 -1.2982 -1.9385 44 1 13.8247 -1.8295 -0.9695 45 1 12.3820 -2.8649 -1.0949 46 1 6.2314 -0.9795 -0.0125 47 1 3.7749 -0.9777 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069352200.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:37 Heat of formation + Delta-G solvation = -34.736178 kcal Electronic energy + Delta-G solvation = -27449.860724 eV Core-core repulsion = 23597.782679 eV Total energy + Delta-G solvation = -3852.078045 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.27824 -39.35700 -38.44027 -35.92835 -34.89194 -33.91458 -32.97163 -31.52870 -31.12195 -29.73152 -27.33173 -27.09542 -26.67653 -24.47330 -23.07519 -22.73380 -22.11698 -20.63488 -19.43984 -18.44258 -17.87667 -17.11115 -16.60217 -16.23276 -15.50205 -15.40359 -15.26134 -15.05711 -14.62253 -14.41095 -14.24961 -13.78307 -13.42418 -13.37621 -13.35645 -13.09821 -12.71563 -12.57092 -12.48400 -12.41297 -12.18266 -11.80288 -11.66320 -11.50741 -11.39288 -11.04671 -10.92836 -10.83082 -10.69623 -10.36119 -10.16836 -10.14970 -9.99573 -9.68803 -9.39992 -9.20513 -9.07363 -8.60006 -8.19804 -7.72216 -6.24223 -4.30411 0.38261 1.34718 1.91186 2.89005 2.98885 3.19652 3.24718 3.28375 3.76510 3.83245 4.06687 4.28832 4.51263 4.67580 4.84934 4.87778 4.98363 5.08759 5.23188 5.25131 5.30988 5.41922 5.50119 5.54440 5.64899 5.67035 5.75157 5.82106 6.00005 6.10340 6.10861 6.15876 6.20684 6.24014 6.27971 6.34933 6.41074 6.61774 6.68797 6.74214 6.78041 6.86882 7.00299 7.15335 7.23174 7.51838 7.71590 7.99766 8.00337 8.28372 8.73783 8.94287 9.36807 10.82097 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011184 B = 0.003099 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.058449 B = 9034.245807 C =10883.878515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.734 5.734 3 C 0.561 3.439 4 O -0.541 6.541 5 C -0.145 4.145 6 C -0.061 4.061 7 C -0.115 4.115 8 C -0.023 4.023 9 C -0.076 4.076 10 C -0.153 4.153 11 C 0.542 3.458 12 O -0.578 6.578 13 N -0.582 5.582 14 C 0.233 3.767 15 C -0.533 4.533 16 H 0.062 0.938 17 C 0.066 3.934 18 N -0.892 5.892 19 Si 0.893 3.107 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.136 3.864 24 C -0.159 4.159 25 C -0.155 4.155 26 C -0.113 4.113 27 C -0.082 4.082 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.404 0.596 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.041 0.959 37 H 0.037 0.963 38 H 0.265 0.735 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.048 0.952 45 H 0.078 0.922 46 H 0.142 0.858 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.207 5.600 3.155 10.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.386 5.386 3 C 0.349 3.651 4 O -0.420 6.420 5 C -0.148 4.148 6 C -0.080 4.080 7 C -0.133 4.133 8 C -0.024 4.024 9 C -0.096 4.096 10 C -0.173 4.173 11 C 0.332 3.668 12 O -0.461 6.461 13 N -0.311 5.311 14 C 0.114 3.886 15 C -0.571 4.571 16 H 0.080 0.920 17 C -0.137 4.137 18 N -0.530 5.530 19 Si 0.720 3.280 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C 0.033 3.967 24 C -0.217 4.217 25 C -0.213 4.213 26 C -0.131 4.131 27 C -0.101 4.101 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.239 0.761 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.161 0.839 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.096 0.904 46 H 0.160 0.840 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.446 6.644 3.161 11.202 hybrid contribution -0.005 -1.209 -1.061 1.608 sum -8.451 5.436 2.100 10.266 Atomic orbital electron populations 1.21551 0.79306 1.02355 1.02385 1.45741 1.07905 1.08859 1.76095 1.18386 0.87434 0.83597 0.75679 1.90753 1.70089 1.31212 1.49897 1.19904 0.92241 0.94715 1.07969 1.21118 0.93730 0.97499 0.95634 1.21316 0.93657 0.97707 1.00619 1.19312 0.93181 0.93245 0.96621 1.22214 0.91082 0.99100 0.97178 1.23505 0.94433 0.99636 0.99743 1.18278 0.87986 0.83577 0.76921 1.90692 1.70535 1.31940 1.52950 1.48207 1.06329 1.07799 1.68804 1.19486 0.92004 0.79430 0.97714 1.21491 1.36626 1.06318 0.92696 0.91991 1.24907 0.95174 0.96404 0.97192 1.69910 1.37214 1.15368 1.30549 0.86629 0.78518 0.78132 0.84680 1.20115 1.21183 1.20096 1.20858 0.80626 1.00269 0.94981 1.22129 1.00555 1.01729 0.97268 1.22119 0.98707 1.03023 0.97424 1.21551 0.93850 0.98602 0.99085 1.21185 0.94504 0.96678 0.97745 0.92127 0.92139 0.90497 0.76106 0.84684 0.84870 0.84906 0.83853 0.94063 0.94485 0.92500 0.89666 0.91398 0.92264 0.92979 0.92954 0.93298 0.90354 0.83987 0.85536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.67 10.70 59.85 0.64 1.31 16 2 N -0.73 -6.90 5.66 -68.03 -0.39 -7.29 16 3 C 0.56 7.16 7.77 -12.32 -0.10 7.06 16 4 O -0.54 -8.59 16.33 5.32 0.09 -8.50 16 5 C -0.15 -1.81 5.88 -104.88 -0.62 -2.42 16 6 C -0.06 -0.76 9.57 -39.26 -0.38 -1.13 16 7 C -0.11 -1.40 9.77 -39.18 -0.38 -1.79 16 8 C -0.02 -0.32 5.87 -105.00 -0.62 -0.94 16 9 C -0.08 -1.18 9.45 -37.16 -0.35 -1.53 16 10 C -0.15 -2.75 8.61 -37.45 -0.32 -3.07 16 11 C 0.54 11.16 7.60 -12.88 -0.10 11.06 16 12 O -0.58 -12.86 15.60 5.21 0.08 -12.78 16 13 N -0.58 -11.87 2.39 -169.03 -0.40 -12.27 16 14 C 0.23 5.18 4.50 -5.20 -0.02 5.16 16 15 C -0.53 -12.99 7.85 -34.44 -0.27 -13.27 16 16 H 0.06 1.57 7.59 -52.48 -0.40 1.17 16 17 C 0.07 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -23.05 13.29 55.43 0.74 -22.31 16 19 Si 0.89 19.74 29.54 -169.99 -5.02 14.72 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.29 -6.30 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 C 0.14 2.48 3.24 -67.93 -0.22 2.26 16 24 C -0.16 -2.49 9.08 37.16 0.34 -2.15 16 25 C -0.15 -2.73 8.60 37.16 0.32 -2.41 16 26 C -0.11 -1.51 9.39 -39.18 -0.37 -1.88 16 27 C -0.08 -0.96 9.52 -39.26 -0.37 -1.33 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.40 2.86 6.85 -40.82 -0.28 2.58 16 32 H 0.14 1.58 7.63 -52.48 -0.40 1.18 16 33 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 34 H 0.13 2.03 7.53 -52.49 -0.40 1.63 16 35 H 0.14 2.60 4.19 -52.49 -0.22 2.38 16 36 H 0.04 0.96 6.19 -51.93 -0.32 0.64 16 37 H 0.04 0.84 5.98 -51.93 -0.31 0.53 16 38 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 39 H 0.09 1.59 6.94 -51.93 -0.36 1.23 16 40 H 0.07 1.14 6.53 -51.93 -0.34 0.80 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.08 1.52 6.92 -51.93 -0.36 1.17 16 46 H 0.14 1.97 6.15 -52.48 -0.32 1.65 16 47 H 0.13 1.11 6.38 -52.49 -0.34 0.77 16 LS Contribution 389.24 15.07 5.87 5.87 Total: -1.00 -30.35 389.24 -8.51 -38.86 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -6.56 Total: 7.23 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -2.91 Total: -3.52 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: -0.05 Total: -41.87 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: 0.17 Total: -21.28 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.35 -8.51 -38.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069352200.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.122 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds