Wall clock time and date at job start Tue Mar 31 2020 05:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86799 * 119.99634 * 2 1 4 4 H 1.48495 * 109.47107 * 269.99624 * 3 2 1 5 5 H 1.48495 * 109.47103 * 30.00115 * 3 2 1 6 6 H 1.48501 * 109.46867 * 149.99809 * 3 2 1 7 7 C 1.39894 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99545 * 197.93512 * 7 2 1 9 9 C 1.41209 * 120.00104 * 17.93184 * 7 2 1 10 10 C 1.40836 * 120.18033 * 24.55156 * 9 7 2 11 11 C 1.36430 * 119.81354 * 180.02562 * 10 9 7 12 12 C 1.39307 * 120.18842 * 0.02562 * 11 10 9 13 13 O 1.35675 * 119.82167 * 179.97438 * 12 11 10 14 14 C 1.42904 * 116.99809 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.46872 * 180.02562 * 14 13 12 16 16 O 1.21289 * 120.00174 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00326 * 180.02562 * 15 14 13 18 18 C 1.47079 * 120.87992 * 359.72119 * 17 15 14 19 19 C 1.53693 * 108.27874 * 128.75467 * 18 17 15 20 20 N 1.46900 * 109.25641 * 54.08358 * 19 18 17 21 21 C 1.46901 * 110.99800 * 172.60642 * 20 19 18 22 22 C 1.52996 * 117.50046 * 13.05070 * 21 20 19 23 23 C 1.53000 * 117.50131 * 304.38645 * 21 20 19 24 24 C 1.46895 * 111.27022 * 296.75618 * 20 19 18 25 25 C 1.47080 * 120.88792 * 179.97438 * 17 15 14 26 26 C 1.39312 * 120.36121 * 0.25349 * 12 11 10 27 27 C 1.36436 * 120.18568 * 359.48466 * 26 12 11 28 28 H 0.96989 * 120.00124 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.09237 * 359.97438 * 10 9 7 30 30 H 1.08007 * 119.90957 * 179.97438 * 11 10 9 31 31 H 1.08994 * 109.47652 * 60.00206 * 14 13 12 32 32 H 1.08998 * 109.47311 * 299.99787 * 14 13 12 33 33 H 1.09001 * 109.62969 * 248.52667 * 18 17 15 34 34 H 1.09007 * 109.63014 * 9.10175 * 18 17 15 35 35 H 1.08997 * 109.64769 * 294.08037 * 19 18 17 36 36 H 1.09007 * 109.44448 * 173.96217 * 19 18 17 37 37 H 1.09009 * 115.54726 * 158.71950 * 21 20 19 38 38 H 1.08995 * 117.49962 * 359.97438 * 22 21 20 39 39 H 1.09004 * 117.49920 * 145.01568 * 22 21 20 40 40 H 1.09000 * 117.49945 * 214.97456 * 23 21 20 41 41 H 1.08994 * 117.49845 * 359.97438 * 23 21 20 42 42 H 1.08997 * 109.49263 * 303.14713 * 24 20 19 43 43 H 1.09002 * 109.51687 * 183.07829 * 24 20 19 44 44 H 1.08999 * 109.62614 * 350.89644 * 25 17 15 45 45 H 1.09001 * 109.63037 * 111.28118 * 25 17 15 46 46 H 1.08003 * 119.91181 * 179.72465 * 26 12 11 47 47 H 1.08001 * 120.09764 * 180.25682 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4903 2.0464 -1.4000 5 1 1.4402 2.6526 0.7000 6 1 3.5403 1.4403 0.7001 7 6 2.0084 -1.2115 -0.0005 8 1 3.0490 -1.2343 0.2875 9 6 1.3538 -2.4046 -0.3776 10 6 0.2247 -2.3575 -1.2181 11 6 -0.4022 -3.5147 -1.5773 12 6 0.0711 -4.7406 -1.1147 13 8 -0.5585 -5.8868 -1.4761 14 6 -0.0225 -7.1096 -0.9666 15 6 -0.8452 -8.2672 -1.4709 16 8 -1.7970 -8.0649 -2.1950 17 7 -0.5239 -9.5272 -1.1166 18 6 0.6291 -9.7952 -0.2437 19 6 0.1602 -10.6930 0.9122 20 7 -0.4932 -11.8885 0.3628 21 6 -0.8003 -12.8556 1.4251 22 6 -0.6981 -12.3712 2.8727 23 6 0.3570 -13.3260 2.3084 24 6 -1.7022 -11.5351 -0.3930 25 6 -1.3136 -10.6713 -1.5970 26 6 1.1838 -4.7955 -0.2782 27 6 1.8255 -3.6479 0.0861 28 1 -0.4850 0.8399 -0.0004 29 1 -0.1442 -1.4079 -1.5767 30 1 -1.2685 -3.4804 -2.2215 31 1 -0.0491 -7.0920 0.1228 32 1 1.0080 -7.2229 -1.3032 33 1 1.4088 -10.3023 -0.8122 34 1 1.0140 -8.8558 0.1534 35 1 -0.5465 -10.1469 1.5370 36 1 1.0203 -10.9917 1.5117 37 1 -1.5808 -13.5795 1.1904 38 1 -0.4027 -11.3350 3.0370 39 1 -1.4112 -12.7766 3.5906 40 1 0.3376 -14.3591 2.6554 41 1 1.3463 -12.9181 2.1012 42 1 -2.3830 -10.9772 0.2499 43 1 -2.1931 -12.4441 -0.7406 44 1 -2.2138 -10.3114 -2.0951 45 1 -0.7186 -11.2592 -2.2960 46 1 1.5418 -5.7495 0.0798 47 1 2.6904 -3.6925 0.7313 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071836622.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:15 Heat of formation + Delta-G solvation = -20.975803 kcal Electronic energy + Delta-G solvation = -27454.710082 eV Core-core repulsion = 23603.228731 eV Total energy + Delta-G solvation = -3851.481351 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.58075 -40.50680 -39.69435 -38.08963 -37.18498 -35.21038 -34.18026 -32.35389 -31.78070 -30.98771 -29.81866 -27.65885 -26.54798 -24.94664 -23.65770 -23.19629 -22.69293 -22.41458 -21.41719 -19.89393 -19.29630 -19.00525 -18.01751 -17.57024 -17.31014 -17.00036 -16.82351 -16.43603 -16.00051 -15.77544 -15.71915 -15.34764 -15.13578 -14.78167 -14.61128 -14.14576 -14.06396 -13.85336 -13.65678 -13.47933 -13.31122 -13.07987 -12.80978 -12.66029 -12.60592 -12.41183 -12.36655 -12.28124 -12.10189 -11.80412 -11.78288 -11.63433 -11.29402 -11.21167 -10.90462 -10.86327 -9.89487 -9.56507 -9.17166 -8.95403 -8.59794 -6.23063 0.93494 1.02900 1.37900 1.40711 1.51176 1.53329 1.53921 2.23100 2.57770 2.71249 2.75353 3.07799 3.38257 3.69998 3.70645 3.84045 3.96627 3.98400 4.03582 4.08717 4.11802 4.18176 4.26162 4.31553 4.35796 4.37289 4.47462 4.62040 4.68775 4.78843 4.80858 4.82868 4.93236 4.99887 5.06356 5.09703 5.19897 5.24931 5.27395 5.34526 5.56465 5.63365 5.86467 5.92762 5.96999 6.06106 6.16905 6.25623 6.54847 6.76997 6.95091 6.97492 7.08042 8.36866 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.023164 B = 0.002108 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.457639 B =13281.536660 C =14081.697150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.031 3.969 3 Si 0.983 3.017 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.495 4.495 8 H 0.080 0.920 9 C 0.056 3.944 10 C -0.154 4.154 11 C -0.133 4.133 12 C -0.006 4.006 13 O -0.328 6.328 14 C 0.045 3.955 15 C 0.518 3.482 16 O -0.570 6.570 17 N -0.607 5.607 18 C 0.103 3.897 19 C 0.037 3.963 20 N -0.508 5.508 21 C 0.012 3.988 22 C -0.225 4.225 23 C -0.162 4.162 24 C 0.051 3.949 25 C 0.115 3.885 26 C -0.158 4.158 27 C -0.204 4.204 28 H 0.287 0.713 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.037 0.963 36 H 0.108 0.892 37 H 0.129 0.871 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.028 0.972 43 H 0.109 0.891 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.140 0.860 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.082 -24.953 4.699 25.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.183 4.183 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.525 4.525 8 H 0.098 0.902 9 C 0.054 3.946 10 C -0.174 4.174 11 C -0.152 4.152 12 C -0.050 4.050 13 O -0.243 6.243 14 C -0.033 4.033 15 C 0.307 3.693 16 O -0.449 6.449 17 N -0.342 5.342 18 C -0.019 4.019 19 C -0.092 4.092 20 N -0.230 5.230 21 C -0.097 4.097 22 C -0.264 4.264 23 C -0.199 4.199 24 C -0.077 4.077 25 C -0.007 4.007 26 C -0.177 4.177 27 C -0.223 4.223 28 H 0.097 0.903 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.055 0.945 36 H 0.126 0.874 37 H 0.147 0.853 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.127 0.873 41 H 0.117 0.883 42 H 0.046 0.954 43 H 0.127 0.873 44 H 0.098 0.902 45 H 0.108 0.892 46 H 0.158 0.842 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.532 -24.927 3.868 25.271 hybrid contribution -0.506 1.325 0.652 1.561 sum 1.026 -23.602 4.520 24.053 Atomic orbital electron populations 1.69899 1.09060 1.30474 1.36400 1.26781 0.95463 1.04643 0.91390 0.85187 0.79114 0.75931 0.79371 1.18944 1.19572 1.17899 1.19738 0.98466 0.92261 1.42027 0.90182 1.17984 0.92424 0.93661 0.90564 1.20881 0.99560 0.96121 1.00816 1.19978 1.01105 0.90850 1.03298 1.18683 0.97169 0.84671 1.04455 1.85907 1.54892 1.12439 1.71066 1.22486 0.98105 0.82335 1.00373 1.20470 0.84301 0.84426 0.80141 1.90695 1.30716 1.85019 1.38473 1.48145 1.31476 1.04585 1.50021 1.22303 0.87438 1.01014 0.91103 1.22721 1.00013 0.90493 0.95923 1.61847 1.24948 1.12382 1.23865 1.22788 1.01879 0.98603 0.86457 1.23604 1.04193 1.00522 0.98118 1.23143 0.94671 1.00260 1.01872 1.22428 0.91038 0.99844 0.94402 1.21785 0.96645 0.85620 0.96638 1.20728 0.96643 0.99207 1.01073 1.20840 1.03678 0.92275 1.05513 0.90257 0.87368 0.88190 0.87931 0.87391 0.88395 0.87803 0.94496 0.87410 0.85300 0.88786 0.88331 0.87267 0.88333 0.95357 0.87265 0.90246 0.89186 0.84225 0.86851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.27 10.96 21.82 0.24 -44.03 16 2 C 0.03 1.58 5.13 85.23 0.44 2.02 16 3 Si 0.98 38.32 29.60 68.60 2.03 40.35 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 6 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 7 C -0.50 -26.46 9.04 23.40 0.21 -26.25 16 8 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 9 C 0.06 3.01 5.57 -21.28 -0.12 2.89 16 10 C -0.15 -8.41 8.64 22.48 0.19 -8.22 16 11 C -0.13 -6.80 9.92 22.10 0.22 -6.58 16 12 C -0.01 -0.29 6.71 22.79 0.15 -0.13 16 13 O -0.33 -14.02 9.65 -70.89 -0.68 -14.71 16 14 C 0.05 1.35 3.58 71.24 0.25 1.61 16 15 C 0.52 15.83 7.78 87.66 0.68 16.51 16 16 O -0.57 -23.06 15.95 15.98 0.25 -22.81 16 17 N -0.61 -12.97 3.00 -817.12 -2.45 -15.42 16 18 C 0.10 1.44 6.53 86.50 0.57 2.01 16 19 C 0.04 0.47 4.28 86.54 0.37 0.84 16 20 N -0.51 -6.70 4.85 -869.17 -4.21 -10.91 16 21 C 0.01 0.13 6.10 44.91 0.27 0.40 16 22 C -0.23 -2.42 9.58 30.62 0.29 -2.13 16 23 C -0.16 -1.48 9.93 30.62 0.30 -1.18 16 24 C 0.05 0.75 5.60 86.37 0.48 1.23 16 25 C 0.12 2.15 6.59 86.34 0.57 2.72 16 26 C -0.16 -6.59 8.96 22.11 0.20 -6.39 16 27 C -0.20 -9.57 9.74 22.48 0.22 -9.35 16 28 H 0.29 13.86 8.30 -92.72 -0.77 13.09 16 29 H 0.11 6.16 6.16 -2.91 -0.02 6.14 16 30 H 0.10 4.90 8.06 -2.91 -0.02 4.87 16 31 H 0.10 2.59 7.16 -2.39 -0.02 2.57 16 32 H 0.11 2.65 7.51 -2.39 -0.02 2.63 16 33 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.10 1.21 6.02 -2.38 -0.01 1.20 16 35 H 0.04 0.56 7.21 -2.39 -0.02 0.55 16 36 H 0.11 1.03 6.33 -2.38 -0.02 1.01 16 37 H 0.13 1.18 8.02 -2.38 -0.02 1.16 16 38 H 0.09 1.12 5.99 -2.39 -0.01 1.11 16 39 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.11 0.76 8.14 -2.39 -0.02 0.75 16 41 H 0.10 0.90 7.22 -2.39 -0.02 0.88 16 42 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.11 1.16 8.04 -2.39 -0.02 1.14 16 44 H 0.08 1.81 7.06 -2.39 -0.02 1.79 16 45 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.14 4.40 6.27 -2.91 -0.02 4.38 16 47 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -70.55 375.07 1.46 -69.08 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.98 Total: 28.45 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: 5.31 Total: -30.00 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -6.43 Total: -70.37 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -0.43 Total: -37.52 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Total: -70.55 1.46 -69.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071836622.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.107 kcal (2) G-P(sol) polarization free energy of solvation -70.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds