Wall clock time and date at job start Tue Mar 31 2020 05:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00002 * 2 1 4 4 H 1.48495 * 109.47238 * 239.99491 * 3 2 1 5 5 H 1.48505 * 109.47286 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46921 * 119.99801 * 3 2 1 7 7 C 1.38815 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99473 * 197.56754 * 7 2 1 9 9 N 1.36930 * 120.00182 * 17.56691 * 7 2 1 10 10 C 1.47040 * 120.45223 * 208.06577 * 9 7 2 11 11 C 1.53368 * 108.59282 * 235.04794 * 10 9 7 12 12 N 1.46963 * 108.77839 * 310.83500 * 11 10 9 13 13 C 1.34778 * 120.59303 * 235.11531 * 12 11 10 14 14 O 1.21284 * 119.99993 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99950 * 179.97438 * 13 12 11 16 16 C 1.53003 * 109.47330 * 180.02562 * 15 13 12 17 17 H 1.09001 * 109.33822 * 305.32952 * 16 15 13 18 18 O 1.42730 * 109.33742 * 65.00139 * 16 15 13 19 19 C 1.43217 * 113.11433 * 172.01414 * 18 16 15 20 20 C 1.52975 * 108.47283 * 289.27935 * 19 18 16 21 21 C 1.50745 * 109.76925 * 49.16273 * 20 19 18 22 22 C 1.38591 * 118.76430 * 163.22402 * 21 20 19 23 23 C 1.38076 * 120.27312 * 179.80880 * 22 21 20 24 24 C 1.38253 * 119.86387 * 0.02562 * 23 22 21 25 25 C 1.38050 * 119.89951 * 0.07664 * 24 23 22 26 26 C 1.37906 * 121.35022 * 343.15947 * 21 20 19 27 27 C 1.46964 * 118.81436 * 55.14105 * 12 11 10 28 28 C 1.46972 * 120.59396 * 28.16589 * 9 7 2 29 29 H 0.97006 * 119.99935 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.48614 * 115.40175 * 10 9 7 31 31 H 1.08993 * 109.77222 * 354.86572 * 10 9 7 32 32 H 1.09009 * 109.61033 * 191.00631 * 11 10 9 33 33 H 1.09003 * 109.61243 * 70.66748 * 11 10 9 34 34 H 1.08995 * 109.47637 * 300.00355 * 15 13 12 35 35 H 1.09002 * 109.47156 * 60.00477 * 15 13 12 36 36 H 1.09007 * 109.63572 * 48.97326 * 19 18 16 37 37 H 1.09000 * 109.63618 * 169.37634 * 19 18 16 38 38 H 1.08996 * 109.41978 * 169.25737 * 20 19 18 39 39 H 1.09007 * 109.41691 * 289.13336 * 20 19 18 40 40 H 1.08001 * 119.86708 * 359.82900 * 22 21 20 41 41 H 1.07998 * 120.06542 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.05403 * 180.02562 * 24 23 22 43 43 H 1.07997 * 119.85680 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.60444 * 64.51686 * 27 12 11 45 45 H 1.08993 * 109.61312 * 184.85636 * 27 12 11 46 46 H 1.08999 * 109.60549 * 5.03094 * 28 9 7 47 47 H 1.09001 * 109.60734 * 244.52714 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0525 -1.2238 0.2829 9 7 1.3735 -2.3606 -0.3569 10 6 1.8172 -3.6529 0.1863 11 6 2.1167 -4.5982 -0.9837 12 7 0.9816 -4.5705 -1.9168 13 6 0.3552 -5.7107 -2.2689 14 8 0.7268 -6.7720 -1.8145 15 6 -0.8078 -5.6667 -3.2264 16 6 -1.3333 -7.0852 -3.4560 17 1 -0.5146 -7.7244 -3.7866 18 8 -1.8672 -7.5949 -2.2344 19 6 -2.5454 -8.8460 -2.3959 20 6 -3.8502 -8.5956 -3.1541 21 6 -3.5755 -7.7638 -4.3810 22 6 -4.5321 -7.7166 -5.3826 23 6 -4.3145 -6.9614 -6.5179 24 6 -3.1372 -6.2499 -6.6563 25 6 -2.1829 -6.2982 -5.6600 26 6 -2.4000 -7.0560 -4.5195 27 6 0.5422 -3.2774 -2.4595 28 6 0.2384 -2.3329 -1.2900 29 1 -0.4850 0.8401 -0.0004 30 1 1.0274 -4.0771 0.8063 31 1 2.7184 -3.5123 0.7829 32 1 2.2570 -5.6119 -0.6084 33 1 3.0204 -4.2699 -1.4972 34 1 -1.6015 -5.0492 -2.8060 35 1 -0.4811 -5.2419 -4.1756 36 1 -1.9175 -9.5324 -2.9641 37 1 -2.7631 -9.2736 -1.4173 38 1 -4.2846 -9.5496 -3.4528 39 1 -4.5493 -8.0657 -2.5071 40 1 -5.4518 -8.2724 -5.2746 41 1 -5.0621 -6.9273 -7.2966 42 1 -2.9640 -5.6580 -7.5428 43 1 -1.2636 -5.7418 -5.7686 44 1 1.3333 -2.8521 -3.0772 45 1 -0.3554 -3.4191 -3.0613 46 1 0.0981 -1.3192 -1.6654 47 1 -0.6647 -2.6641 -0.7774 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073099729.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:01 Heat of formation + Delta-G solvation = -24.016110 kcal Electronic energy + Delta-G solvation = -28703.035196 eV Core-core repulsion = 24851.422007 eV Total energy + Delta-G solvation = -3851.613188 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.66996 -39.37635 -37.60714 -36.67288 -33.89461 -33.78437 -32.38081 -31.41676 -30.33252 -29.90658 -28.58956 -26.79161 -24.59560 -23.94270 -23.48308 -22.75532 -21.90042 -20.35261 -20.14371 -18.49738 -17.60459 -16.96395 -16.45965 -16.08408 -15.87701 -15.55467 -15.21502 -14.87050 -14.67356 -14.40498 -14.13871 -13.74477 -13.67609 -13.48839 -13.28568 -13.23651 -13.10441 -12.70125 -12.49662 -12.35378 -12.05946 -11.83873 -11.63635 -11.42764 -11.29642 -11.04074 -10.80790 -10.73521 -10.71099 -10.48883 -10.22102 -10.01218 -9.82514 -9.65167 -9.29651 -8.95203 -8.77511 -8.57901 -8.18076 -6.69872 -5.84813 -3.28763 1.11275 1.16164 3.07180 3.35357 3.40870 3.41304 3.43860 3.56527 3.75809 4.42412 4.44509 4.46284 4.61192 4.73192 4.90063 4.95191 4.98406 5.08793 5.21375 5.24265 5.27078 5.34060 5.34943 5.42734 5.49383 5.65085 5.72173 5.78657 5.81246 5.86508 5.89161 5.93824 5.98971 6.14621 6.23579 6.24215 6.30186 6.36967 6.39879 6.47607 6.77543 6.82261 6.97268 7.16001 7.24321 7.47221 7.72509 7.98113 8.36637 8.65417 9.12955 9.75630 10.32891 11.22878 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017691 B = 0.002890 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.353672 B = 9685.290115 C =10510.733975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.256 4.256 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.132 3.868 11 C 0.097 3.903 12 N -0.599 5.599 13 C 0.513 3.487 14 O -0.548 6.548 15 C -0.131 4.131 16 C 0.150 3.850 17 H 0.078 0.922 18 O -0.353 6.353 19 C 0.060 3.940 20 C -0.117 4.117 21 C -0.071 4.071 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.122 4.122 25 C -0.110 4.110 26 C -0.112 4.112 27 C 0.080 3.920 28 C 0.158 3.842 29 H 0.255 0.745 30 H 0.024 0.976 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.053 0.947 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.126 0.874 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.100 0.900 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.908 -15.222 -12.997 21.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.385 4.385 8 H 0.085 0.915 9 N -0.315 5.315 10 C 0.005 3.995 11 C -0.027 4.027 12 N -0.332 5.332 13 C 0.301 3.699 14 O -0.426 6.426 15 C -0.171 4.171 16 C 0.091 3.909 17 H 0.095 0.905 18 O -0.271 6.271 19 C -0.017 4.017 20 C -0.154 4.154 21 C -0.071 4.071 22 C -0.138 4.138 23 C -0.137 4.137 24 C -0.140 4.140 25 C -0.128 4.128 26 C -0.112 4.112 27 C -0.045 4.045 28 C 0.031 3.969 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.072 0.928 37 H 0.117 0.883 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.144 0.856 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.118 0.882 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.793 -15.507 -12.539 21.411 hybrid contribution 0.171 0.973 -0.354 1.049 sum -7.622 -14.534 -12.893 20.870 Atomic orbital electron populations 1.70015 1.05277 1.25779 1.53559 1.25063 0.95294 0.98502 1.00706 0.86342 0.78906 0.83167 0.78184 1.20984 1.21609 1.20844 1.19172 0.92840 0.84753 1.41750 0.91534 1.43994 1.36569 1.01565 1.49327 1.21311 0.98354 0.87015 0.92844 1.22153 0.87648 1.01002 0.91900 1.48046 1.32928 1.06716 1.45494 1.20309 0.83606 0.83710 0.82277 1.90648 1.66442 1.29534 1.56002 1.21799 0.97998 0.96688 1.00621 1.20527 0.92395 0.94781 0.83160 0.90455 1.88215 1.73096 1.36731 1.29065 1.22569 0.91580 0.86587 1.00969 1.21179 0.99712 0.99611 0.94902 1.19522 0.93710 0.97890 0.95943 1.21060 0.98831 1.00028 0.93870 1.21111 0.97520 0.97296 0.97773 1.21103 0.94154 0.99694 0.99023 1.21112 0.99739 0.98626 0.93292 1.20289 0.96036 0.98234 0.96638 1.22670 0.98961 0.84084 0.98748 1.21168 0.89288 0.98555 0.87877 0.93459 0.95848 0.91590 0.90051 0.92158 0.87808 0.87691 0.92828 0.88330 0.89883 0.89575 0.86072 0.86059 0.85855 0.85593 0.91860 0.91123 0.88222 0.95842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.43 11.20 55.49 0.62 -24.81 16 2 C 0.00 0.08 4.90 -17.43 -0.09 0.00 16 3 Si 0.90 21.11 29.59 -169.99 -5.03 16.08 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.26 -6.83 9.57 -15.06 -0.14 -6.98 16 8 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 9 N -0.59 -14.56 2.97 -171.98 -0.51 -15.08 16 10 C 0.13 2.82 6.68 -3.56 -0.02 2.80 16 11 C 0.10 1.83 6.59 -3.60 -0.02 1.81 16 12 N -0.60 -11.01 2.95 -172.49 -0.51 -11.52 16 13 C 0.51 9.11 7.58 -10.99 -0.08 9.03 16 14 O -0.55 -11.20 14.81 -9.00 -0.13 -11.33 16 15 C -0.13 -1.83 3.45 -27.88 -0.10 -1.93 16 16 C 0.15 2.04 2.27 -27.90 -0.06 1.97 16 17 H 0.08 1.09 7.94 -51.93 -0.41 0.67 16 18 O -0.35 -5.36 9.66 -49.78 -0.48 -5.84 16 19 C 0.06 0.67 6.85 37.14 0.25 0.92 16 20 C -0.12 -1.11 6.00 -27.87 -0.17 -1.28 16 21 C -0.07 -0.78 5.78 -104.59 -0.60 -1.38 16 22 C -0.12 -1.13 9.67 -39.51 -0.38 -1.52 16 23 C -0.12 -1.06 10.05 -39.64 -0.40 -1.46 16 24 C -0.12 -1.13 10.05 -39.64 -0.40 -1.53 16 25 C -0.11 -1.14 9.08 -39.50 -0.36 -1.50 16 26 C -0.11 -1.33 5.46 -104.62 -0.57 -1.90 16 27 C 0.08 1.42 6.51 -3.60 -0.02 1.40 16 28 C 0.16 3.60 5.52 -3.60 -0.02 3.58 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 32 H 0.08 1.51 6.99 -51.92 -0.36 1.15 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.10 1.48 7.72 -51.93 -0.40 1.08 16 35 H 0.11 1.17 6.06 -51.93 -0.31 0.86 16 36 H 0.05 0.56 8.07 -51.93 -0.42 0.14 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.13 1.12 6.45 -52.49 -0.34 0.78 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.07 1.05 5.91 -51.93 -0.31 0.74 16 46 H 0.10 2.49 5.99 -51.93 -0.31 2.18 16 47 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 368.96 15.07 5.56 5.56 Total: -1.00 -32.37 368.96 -10.73 -43.10 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.06 Total: 1.80 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -3.19 Total: 2.04 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.40 Total: -51.40 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.61 Total: -17.17 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.37 -10.73 -43.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073099729.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.082 kcal (2) G-P(sol) polarization free energy of solvation -32.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds