Wall clock time and date at job start Tue Mar 31 2020 05:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99865 * 2 1 4 4 H 1.48495 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47459 * 300.00503 * 3 2 1 6 6 H 1.48506 * 109.46876 * 60.00547 * 3 2 1 7 7 C 1.38809 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99581 * 162.93927 * 7 2 1 9 9 N 1.36933 * 120.00544 * 342.93794 * 7 2 1 10 10 C 1.46966 * 120.59713 * 151.59142 * 9 7 2 11 11 C 1.53370 * 108.77369 * 124.83705 * 10 9 7 12 12 N 1.46960 * 108.63633 * 49.34614 * 11 10 9 13 13 C 1.34778 * 120.59906 * 124.74849 * 12 11 10 14 14 O 1.21276 * 119.99580 * 359.97438 * 13 12 11 15 15 C 1.50695 * 119.99725 * 179.97438 * 13 12 11 16 16 C 1.53005 * 109.46835 * 180.02562 * 15 13 12 17 17 H 1.08999 * 109.33721 * 55.32760 * 16 15 13 18 18 O 1.42725 * 109.33512 * 295.81461 * 16 15 13 19 19 C 1.43218 * 113.13682 * 188.05630 * 18 16 15 20 20 C 1.52971 * 108.46710 * 70.70246 * 19 18 16 21 21 C 1.50741 * 109.75284 * 310.76550 * 20 19 18 22 22 C 1.38594 * 118.76121 * 196.87536 * 21 20 19 23 23 C 1.38074 * 120.27917 * 180.24707 * 22 21 20 24 24 C 1.38260 * 119.85908 * 359.97438 * 23 22 21 25 25 C 1.38059 * 119.89897 * 359.91731 * 24 23 22 26 26 C 1.37906 * 121.35398 * 16.95748 * 21 20 19 27 27 C 1.46968 * 118.80591 * 304.76641 * 12 11 10 28 28 C 1.46998 * 120.61142 * 331.34972 * 9 7 2 29 29 H 0.97000 * 120.00071 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.60748 * 5.00841 * 10 9 7 31 31 H 1.08996 * 109.61207 * 244.66881 * 10 9 7 32 32 H 1.09009 * 109.60635 * 169.08157 * 11 10 9 33 33 H 1.08992 * 109.61153 * 289.42009 * 11 10 9 34 34 H 1.09001 * 109.47647 * 299.99856 * 15 13 12 35 35 H 1.08998 * 109.47823 * 60.00221 * 15 13 12 36 36 H 1.08997 * 109.62998 * 311.00907 * 19 18 16 37 37 H 1.09002 * 109.80690 * 190.49659 * 19 18 16 38 38 H 1.09001 * 109.41989 * 190.68225 * 20 19 18 39 39 H 1.08998 * 109.37880 * 70.82629 * 20 19 18 40 40 H 1.08005 * 119.86127 * 0.21987 * 22 21 20 41 41 H 1.07996 * 120.07148 * 179.97438 * 23 22 21 42 42 H 1.07994 * 120.05311 * 179.91359 * 24 23 22 43 43 H 1.07993 * 119.84937 * 180.02562 * 25 24 23 44 44 H 1.09005 * 109.60566 * 174.97270 * 27 12 11 45 45 H 1.09002 * 109.61506 * 295.48278 * 27 12 11 46 46 H 1.09008 * 109.46585 * 115.42057 * 28 9 7 47 47 H 1.08993 * 109.76189 * 355.07572 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0546 -1.2226 -0.2750 9 7 1.3708 -2.3621 0.3469 10 6 1.8110 -3.6523 -0.2023 11 6 2.1086 -4.6077 0.9600 12 7 0.9705 -4.5854 1.8895 13 6 0.3393 -5.7268 2.2289 14 8 0.7092 -6.7849 1.7658 15 6 -0.8259 -5.6883 3.1837 16 6 -1.3559 -7.1073 3.3990 17 1 -0.5423 -7.7491 3.7371 18 8 -1.8707 -7.6116 2.1670 19 6 -2.5537 -8.8620 2.3122 20 6 -3.8701 -8.6123 3.0503 21 6 -3.6130 -7.7877 4.2858 22 6 -4.5847 -7.7448 5.2730 23 6 -4.3841 -6.9954 6.4152 24 6 -3.2086 -6.2852 6.5749 25 6 -2.2392 -6.3292 5.5930 26 6 -2.4391 -7.0819 4.4459 27 6 0.5326 -3.2958 2.4420 28 6 0.2350 -2.3403 1.2799 29 1 -0.4850 0.8400 0.0004 30 1 2.7127 -3.5080 -0.7973 31 1 1.0231 -4.0716 -0.8279 32 1 2.2475 -5.6185 0.5762 33 1 3.0125 -4.2851 1.4765 34 1 -0.5004 -5.2737 4.1378 35 1 -1.6166 -5.0641 2.7672 36 1 -1.9362 -9.5518 2.8875 37 1 -2.7595 -9.2867 1.3297 38 1 -4.3115 -9.5668 3.3370 39 1 -4.5569 -8.0777 2.3941 40 1 -5.5030 -8.2995 5.1482 41 1 -5.1438 -6.9640 7.1822 42 1 -3.0490 -5.6969 7.4664 43 1 -1.3211 -5.7745 5.7188 44 1 -0.3692 -3.4401 3.0371 45 1 1.3226 -2.8779 3.0661 46 1 -0.6673 -2.6648 0.7614 47 1 0.0930 -1.3302 1.6639 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073099731.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:05 Heat of formation + Delta-G solvation = -24.326990 kcal Electronic energy + Delta-G solvation = -28704.679774 eV Core-core repulsion = 24853.053105 eV Total energy + Delta-G solvation = -3851.626669 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.66860 -39.37667 -37.60551 -36.67169 -33.89441 -33.78510 -32.37913 -31.41655 -30.33518 -29.90670 -28.59010 -26.79475 -24.59590 -23.94011 -23.48834 -22.75323 -21.90173 -20.35358 -20.14365 -18.49989 -17.60718 -16.95586 -16.45992 -16.08536 -15.88053 -15.55330 -15.21742 -14.87074 -14.67622 -14.40380 -14.13969 -13.74348 -13.66841 -13.49303 -13.28545 -13.23784 -13.10216 -12.70609 -12.49685 -12.35318 -12.06087 -11.83887 -11.63512 -11.42726 -11.30307 -11.04091 -10.84768 -10.71965 -10.70180 -10.46245 -10.21733 -10.00924 -9.82019 -9.64971 -9.29328 -8.95201 -8.77551 -8.59010 -8.18048 -6.69420 -5.85166 -3.29621 1.11253 1.16173 3.07385 3.33356 3.41139 3.42545 3.44549 3.56371 3.75765 4.42238 4.44648 4.46003 4.61220 4.73284 4.90107 4.95264 4.98387 5.08931 5.21208 5.24331 5.27200 5.34002 5.35027 5.42634 5.49450 5.65143 5.72468 5.78639 5.81146 5.86417 5.89116 5.93662 5.98735 6.14288 6.23600 6.24207 6.30182 6.36977 6.39924 6.47568 6.77547 6.82504 6.97185 7.16258 7.24332 7.47387 7.73021 7.98111 8.36502 8.65601 9.12702 9.75328 10.32919 11.22616 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017684 B = 0.002891 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.932167 B = 9682.595690 C =10511.394311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.254 4.254 8 H 0.068 0.932 9 N -0.592 5.592 10 C 0.132 3.868 11 C 0.097 3.903 12 N -0.599 5.599 13 C 0.513 3.487 14 O -0.547 6.547 15 C -0.131 4.131 16 C 0.150 3.850 17 H 0.078 0.922 18 O -0.353 6.353 19 C 0.060 3.940 20 C -0.117 4.117 21 C -0.071 4.071 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.122 4.122 25 C -0.110 4.110 26 C -0.112 4.112 27 C 0.080 3.920 28 C 0.157 3.843 29 H 0.254 0.746 30 H 0.065 0.935 31 H 0.023 0.977 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.053 0.947 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.126 0.874 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.023 0.977 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.956 -15.340 12.853 21.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.383 4.383 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.005 3.995 11 C -0.027 4.027 12 N -0.332 5.332 13 C 0.301 3.699 14 O -0.426 6.426 15 C -0.171 4.171 16 C 0.091 3.909 17 H 0.095 0.905 18 O -0.271 6.271 19 C -0.017 4.017 20 C -0.154 4.154 21 C -0.071 4.071 22 C -0.138 4.138 23 C -0.137 4.137 24 C -0.140 4.140 25 C -0.128 4.128 26 C -0.112 4.112 27 C -0.045 4.045 28 C 0.031 3.969 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.072 0.928 37 H 0.117 0.883 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.144 0.856 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.041 0.959 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.825 -15.629 12.392 21.426 hybrid contribution 0.136 0.981 0.357 1.053 sum -7.689 -14.648 12.749 20.886 Atomic orbital electron populations 1.70029 1.05283 1.25548 1.53755 1.25077 0.95307 0.98516 1.00701 0.86207 0.79385 0.83773 0.77309 1.20216 1.21694 1.21497 1.19244 0.92676 0.84611 1.41789 0.91473 1.43977 1.36506 1.01695 1.49266 1.21291 0.98385 0.87002 0.92852 1.22150 0.87601 1.00994 0.91963 1.48047 1.32654 1.06830 1.45674 1.20302 0.83630 0.83672 0.82290 1.90646 1.66593 1.29799 1.55526 1.21800 0.97958 0.96694 1.00648 1.20528 0.92373 0.94817 0.83137 0.90482 1.88213 1.73399 1.36835 1.28623 1.22560 0.91419 0.86616 1.01112 1.21182 0.99708 0.99671 0.94865 1.19523 0.93662 0.97902 0.95972 1.21061 0.98745 1.00055 0.93931 1.21113 0.97579 0.97326 0.97682 1.21107 0.94080 0.99689 0.99108 1.21112 0.99684 0.98645 0.93317 1.20284 0.96030 0.98263 0.96613 1.22669 0.98951 0.84191 0.98646 1.21166 0.89346 0.98396 0.88031 0.93567 0.91648 0.95855 0.90035 0.92134 0.87704 0.87820 0.92837 0.88331 0.89888 0.89571 0.86072 0.86056 0.85853 0.85596 0.91110 0.91840 0.95856 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.44 11.21 55.49 0.62 -24.81 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 3 Si 0.90 21.10 29.59 -169.99 -5.03 16.08 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.25 -6.78 9.57 -15.06 -0.14 -6.92 16 8 H 0.07 1.77 7.89 -52.48 -0.41 1.35 16 9 N -0.59 -14.56 2.97 -172.02 -0.51 -15.07 16 10 C 0.13 2.82 6.67 -3.60 -0.02 2.80 16 11 C 0.10 1.83 6.60 -3.60 -0.02 1.80 16 12 N -0.60 -11.00 2.95 -172.49 -0.51 -11.51 16 13 C 0.51 9.11 7.57 -10.99 -0.08 9.02 16 14 O -0.55 -11.18 14.79 -9.77 -0.14 -11.32 16 15 C -0.13 -1.83 3.44 -27.88 -0.10 -1.92 16 16 C 0.15 2.04 2.28 -27.90 -0.06 1.97 16 17 H 0.08 1.08 7.96 -51.93 -0.41 0.67 16 18 O -0.35 -5.36 9.60 -50.56 -0.49 -5.85 16 19 C 0.06 0.67 6.85 37.14 0.25 0.92 16 20 C -0.12 -1.11 6.00 -27.88 -0.17 -1.28 16 21 C -0.07 -0.77 5.78 -104.59 -0.60 -1.38 16 22 C -0.12 -1.13 9.67 -39.51 -0.38 -1.52 16 23 C -0.12 -1.06 10.05 -39.63 -0.40 -1.46 16 24 C -0.12 -1.13 10.05 -39.64 -0.40 -1.53 16 25 C -0.11 -1.14 9.08 -39.50 -0.36 -1.50 16 26 C -0.11 -1.32 5.46 -104.61 -0.57 -1.90 16 27 C 0.08 1.42 6.51 -3.60 -0.02 1.40 16 28 C 0.16 3.58 5.50 -3.58 -0.02 3.56 16 29 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 1.52 6.99 -51.92 -0.36 1.15 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.10 1.17 6.10 -51.93 -0.32 0.85 16 35 H 0.10 1.48 7.72 -51.93 -0.40 1.08 16 36 H 0.05 0.56 8.07 -51.93 -0.42 0.14 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.13 1.12 6.46 -52.49 -0.34 0.78 16 44 H 0.07 1.05 5.91 -51.93 -0.31 0.74 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16 47 H 0.10 2.47 6.02 -51.93 -0.31 2.16 16 LS Contribution 368.97 15.07 5.56 5.56 Total: -1.00 -32.43 368.97 -10.75 -43.18 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -7.06 Total: 1.69 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -3.19 Total: 2.07 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.40 Total: -51.40 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.63 Total: -17.17 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.43 -10.75 -43.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073099731.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.850 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds