Wall clock time and date at job start Tue Mar 31 2020 05:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99865 * 2 1 4 4 H 1.48495 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47459 * 300.00503 * 3 2 1 6 6 H 1.48506 * 109.46876 * 60.00547 * 3 2 1 7 7 C 1.38809 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99581 * 162.93927 * 7 2 1 9 9 N 1.36933 * 120.00544 * 342.93794 * 7 2 1 10 10 C 1.46966 * 120.59713 * 151.59142 * 9 7 2 11 11 C 1.53370 * 108.77369 * 124.83705 * 10 9 7 12 12 N 1.46960 * 108.63633 * 49.34614 * 11 10 9 13 13 C 1.34778 * 120.59906 * 124.74849 * 12 11 10 14 14 O 1.21276 * 119.99580 * 359.97438 * 13 12 11 15 15 C 1.50695 * 119.99725 * 179.97438 * 13 12 11 16 16 C 1.53005 * 109.46835 * 180.02562 * 15 13 12 17 17 H 1.08999 * 109.33721 * 55.32760 * 16 15 13 18 18 O 1.42725 * 109.33512 * 295.81461 * 16 15 13 19 19 C 1.43218 * 113.13682 * 188.05630 * 18 16 15 20 20 C 1.52971 * 108.46710 * 70.70246 * 19 18 16 21 21 C 1.50741 * 109.75284 * 310.76550 * 20 19 18 22 22 C 1.38594 * 118.76121 * 196.87536 * 21 20 19 23 23 C 1.38074 * 120.27917 * 180.24707 * 22 21 20 24 24 C 1.38260 * 119.85908 * 359.97438 * 23 22 21 25 25 C 1.38059 * 119.89897 * 359.91731 * 24 23 22 26 26 C 1.37906 * 121.35398 * 16.95748 * 21 20 19 27 27 C 1.46968 * 118.80591 * 304.76641 * 12 11 10 28 28 C 1.46998 * 120.61142 * 331.34972 * 9 7 2 29 29 H 0.97000 * 120.00071 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.60748 * 5.00841 * 10 9 7 31 31 H 1.08996 * 109.61207 * 244.66881 * 10 9 7 32 32 H 1.09009 * 109.60635 * 169.08157 * 11 10 9 33 33 H 1.08992 * 109.61153 * 289.42009 * 11 10 9 34 34 H 1.09001 * 109.47647 * 299.99856 * 15 13 12 35 35 H 1.08998 * 109.47823 * 60.00221 * 15 13 12 36 36 H 1.08997 * 109.62998 * 311.00907 * 19 18 16 37 37 H 1.09002 * 109.80690 * 190.49659 * 19 18 16 38 38 H 1.09001 * 109.41989 * 190.68225 * 20 19 18 39 39 H 1.08998 * 109.37880 * 70.82629 * 20 19 18 40 40 H 1.08005 * 119.86127 * 0.21987 * 22 21 20 41 41 H 1.07996 * 120.07148 * 179.97438 * 23 22 21 42 42 H 1.07994 * 120.05311 * 179.91359 * 24 23 22 43 43 H 1.07993 * 119.84937 * 180.02562 * 25 24 23 44 44 H 1.09005 * 109.60566 * 174.97270 * 27 12 11 45 45 H 1.09002 * 109.61506 * 295.48278 * 27 12 11 46 46 H 1.09008 * 109.46585 * 115.42057 * 28 9 7 47 47 H 1.08993 * 109.76189 * 355.07572 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0546 -1.2226 -0.2750 9 7 1.3708 -2.3621 0.3469 10 6 1.8110 -3.6523 -0.2023 11 6 2.1086 -4.6077 0.9600 12 7 0.9705 -4.5854 1.8895 13 6 0.3393 -5.7268 2.2289 14 8 0.7092 -6.7849 1.7658 15 6 -0.8259 -5.6883 3.1837 16 6 -1.3559 -7.1073 3.3990 17 1 -0.5423 -7.7491 3.7371 18 8 -1.8707 -7.6116 2.1670 19 6 -2.5537 -8.8620 2.3122 20 6 -3.8701 -8.6123 3.0503 21 6 -3.6130 -7.7877 4.2858 22 6 -4.5847 -7.7448 5.2730 23 6 -4.3841 -6.9954 6.4152 24 6 -3.2086 -6.2852 6.5749 25 6 -2.2392 -6.3292 5.5930 26 6 -2.4391 -7.0819 4.4459 27 6 0.5326 -3.2958 2.4420 28 6 0.2350 -2.3403 1.2799 29 1 -0.4850 0.8400 0.0004 30 1 2.7127 -3.5080 -0.7973 31 1 1.0231 -4.0716 -0.8279 32 1 2.2475 -5.6185 0.5762 33 1 3.0125 -4.2851 1.4765 34 1 -0.5004 -5.2737 4.1378 35 1 -1.6166 -5.0641 2.7672 36 1 -1.9362 -9.5518 2.8875 37 1 -2.7595 -9.2867 1.3297 38 1 -4.3115 -9.5668 3.3370 39 1 -4.5569 -8.0777 2.3941 40 1 -5.5030 -8.2995 5.1482 41 1 -5.1438 -6.9640 7.1822 42 1 -3.0490 -5.6969 7.4664 43 1 -1.3211 -5.7745 5.7188 44 1 -0.3692 -3.4401 3.0371 45 1 1.3226 -2.8779 3.0661 46 1 -0.6673 -2.6648 0.7614 47 1 0.0930 -1.3302 1.6639 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073099731.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:04 Heat of formation + Delta-G solvation = -42.075238 kcal Electronic energy + Delta-G solvation = -28705.449395 eV Core-core repulsion = 24853.053105 eV Total energy + Delta-G solvation = -3852.396291 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.63448 -40.69708 -38.63564 -38.18897 -35.57308 -34.80404 -33.40274 -33.02349 -31.93049 -30.88183 -29.63827 -28.46192 -25.85248 -25.10013 -24.73630 -24.25021 -22.93063 -21.85398 -20.98956 -20.06941 -18.86978 -18.23151 -17.69456 -17.24381 -17.19644 -16.67039 -16.47334 -16.28568 -16.02266 -15.48442 -15.31572 -15.23478 -15.12553 -14.92389 -14.61060 -14.29901 -14.19787 -14.01289 -13.46560 -13.38334 -13.25203 -13.19036 -12.97705 -12.69936 -12.63152 -12.47917 -12.36843 -12.19925 -12.01890 -11.90617 -11.80116 -11.64715 -11.53351 -10.80776 -10.59828 -10.52930 -9.79151 -9.69214 -9.53323 -8.65028 -7.88360 -5.37131 0.36847 0.45548 1.48242 1.50960 1.61251 1.67449 2.06715 2.51874 2.73751 2.87227 3.26225 3.41655 3.59531 3.66254 3.82956 3.83221 3.94443 4.13342 4.17940 4.24970 4.27010 4.31374 4.32796 4.38775 4.41186 4.58632 4.60141 4.61047 4.65897 4.69809 4.77075 4.81731 4.83880 4.89520 4.97911 5.07178 5.09325 5.18239 5.23516 5.52545 5.54631 5.61252 5.61552 5.64460 5.67543 6.08989 6.22272 6.35775 6.52879 7.11007 7.22542 7.78336 8.32696 9.17060 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017684 B = 0.002891 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.932167 B = 9682.595690 C =10511.394311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.046 4.046 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.296 1.296 6 H -0.286 1.286 7 C -0.265 4.265 8 H 0.069 0.931 9 N -0.609 5.609 10 C 0.132 3.868 11 C 0.107 3.893 12 N -0.605 5.605 13 C 0.511 3.489 14 O -0.576 6.576 15 C -0.124 4.124 16 C 0.153 3.847 17 H 0.065 0.935 18 O -0.388 6.388 19 C 0.052 3.948 20 C -0.111 4.111 21 C -0.088 4.088 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.127 4.127 25 C -0.119 4.119 26 C -0.132 4.132 27 C 0.096 3.904 28 C 0.163 3.837 29 H 0.252 0.748 30 H 0.072 0.928 31 H 0.004 0.996 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.137 0.863 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.142 0.858 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.138 0.862 44 H 0.106 0.894 45 H 0.075 0.925 46 H -0.005 1.005 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.403 -15.602 15.117 23.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.242 4.242 3 Si 0.798 3.202 4 H -0.192 1.192 5 H -0.223 1.223 6 H -0.212 1.212 7 C -0.395 4.395 8 H 0.086 0.914 9 N -0.332 5.332 10 C 0.006 3.994 11 C -0.017 4.017 12 N -0.337 5.337 13 C 0.301 3.699 14 O -0.456 6.456 15 C -0.163 4.163 16 C 0.095 3.905 17 H 0.083 0.917 18 O -0.307 6.307 19 C -0.024 4.024 20 C -0.148 4.148 21 C -0.088 4.088 22 C -0.143 4.143 23 C -0.138 4.138 24 C -0.145 4.145 25 C -0.137 4.137 26 C -0.132 4.132 27 C -0.028 4.028 28 C 0.036 3.964 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.022 0.978 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.154 0.846 35 H 0.120 0.880 36 H 0.074 0.926 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.102 0.898 40 H 0.160 0.840 41 H 0.164 0.836 42 H 0.163 0.837 43 H 0.156 0.844 44 H 0.124 0.876 45 H 0.093 0.907 46 H 0.013 0.987 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.267 -15.916 14.670 23.171 hybrid contribution 0.236 0.990 -0.398 1.092 sum -8.031 -14.927 14.273 22.159 Atomic orbital electron populations 1.70177 1.06660 1.26017 1.55019 1.25813 0.96036 1.01490 1.00835 0.85178 0.78571 0.79654 0.76804 1.19185 1.22284 1.21198 1.19547 0.92939 0.85609 1.41381 0.91365 1.44255 1.36723 1.02167 1.50098 1.21343 0.97867 0.86370 0.93840 1.21952 0.88388 1.00117 0.91264 1.48138 1.32633 1.07271 1.45709 1.20952 0.83909 0.82822 0.82219 1.90629 1.67511 1.30808 1.56676 1.21850 0.96025 0.97550 1.00923 1.20443 0.92795 0.94000 0.83257 0.91710 1.88148 1.74075 1.38500 1.29975 1.22774 0.92135 0.85401 1.02088 1.21158 0.98616 1.00771 0.94271 1.19779 0.93926 0.98254 0.96886 1.21344 0.99109 1.00209 0.93655 1.21497 0.97995 0.96349 0.97955 1.21434 0.93834 0.99692 0.99508 1.21315 1.00613 0.98619 0.93146 1.20219 0.96158 0.99988 0.96829 1.22479 1.00922 0.82742 0.96672 1.21016 0.87923 0.98383 0.89065 0.93897 0.90989 0.97819 0.89872 0.90946 0.84557 0.88007 0.92619 0.87423 0.87382 0.89785 0.83999 0.83569 0.83651 0.84432 0.87632 0.90720 0.98731 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.57 11.21 21.65 0.24 -53.33 16 2 C -0.05 -2.49 4.92 84.86 0.42 -2.08 16 3 Si 0.97 43.51 29.59 68.60 2.03 45.54 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.26 -14.22 9.57 84.03 0.80 -13.42 16 8 H 0.07 3.58 7.89 -2.91 -0.02 3.55 16 9 N -0.61 -30.31 2.97 -698.13 -2.08 -32.39 16 10 C 0.13 5.74 6.67 86.41 0.58 6.31 16 11 C 0.11 3.99 6.60 86.42 0.57 4.56 16 12 N -0.61 -21.72 2.95 -818.02 -2.41 -24.13 16 13 C 0.51 17.84 7.57 87.66 0.66 18.50 16 14 O -0.58 -23.61 14.79 11.64 0.17 -23.44 16 15 C -0.12 -3.31 3.44 29.85 0.10 -3.21 16 16 C 0.15 4.11 2.28 29.84 0.07 4.17 16 17 H 0.07 1.83 7.96 -2.39 -0.02 1.81 16 18 O -0.39 -11.92 9.60 -134.32 -1.29 -13.21 16 19 C 0.05 1.15 6.85 71.97 0.49 1.65 16 20 C -0.11 -1.98 6.00 29.85 0.18 -1.80 16 21 C -0.09 -1.81 5.78 -19.84 -0.11 -1.92 16 22 C -0.13 -2.06 9.67 22.32 0.22 -1.84 16 23 C -0.12 -1.78 10.05 22.24 0.22 -1.55 16 24 C -0.13 -1.99 10.05 22.23 0.22 -1.77 16 25 C -0.12 -2.23 9.08 22.32 0.20 -2.03 16 26 C -0.13 -2.97 5.46 -19.86 -0.11 -3.08 16 27 C 0.10 3.29 6.51 86.41 0.56 3.85 16 28 C 0.16 7.50 5.50 86.41 0.48 7.98 16 29 H 0.25 13.95 8.31 -92.71 -0.77 13.17 16 30 H 0.07 2.96 7.93 -2.39 -0.02 2.94 16 31 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.08 3.08 6.99 -2.38 -0.02 3.07 16 33 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.14 2.69 6.10 -2.39 -0.01 2.68 16 35 H 0.10 2.80 7.72 -2.39 -0.02 2.78 16 36 H 0.06 1.16 8.07 -2.39 -0.02 1.14 16 37 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 43 H 0.14 2.10 6.46 -2.91 -0.02 2.08 16 44 H 0.11 2.89 5.91 -2.38 -0.01 2.88 16 45 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 46 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 47 H 0.08 3.88 6.02 -2.39 -0.01 3.86 16 Total: -1.00 -71.07 368.97 3.19 -67.88 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.97 Total: 18.76 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 5.55 Total: 14.33 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -4.25 Total: -109.85 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -1.12 Total: -36.65 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -71.07 3.19 -67.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073099731.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.805 kcal (2) G-P(sol) polarization free energy of solvation -71.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds