Wall clock time and date at job start Tue Mar 31 2020 05:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46492 * 109.47199 * 2 1 4 4 C 1.46506 * 120.00016 * 270.00056 * 3 2 1 5 5 C 1.50696 * 109.46771 * 269.99931 * 4 3 2 6 6 H 1.07999 * 120.00352 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00036 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99743 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00324 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47173 * 59.99731 * 9 7 5 11 11 H 1.48501 * 109.47118 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47262 * 299.99474 * 9 7 5 13 13 C 1.34778 * 120.00039 * 89.99767 * 3 2 1 14 14 O 1.21281 * 120.00178 * 180.02562 * 13 3 2 15 15 C 1.50696 * 119.99830 * 0.02562 * 13 3 2 16 16 N 1.46506 * 109.47148 * 179.97438 * 15 13 3 17 17 C 1.39755 * 119.99857 * 179.72552 * 16 15 13 18 18 C 1.38920 * 120.01374 * 359.72541 * 17 16 15 19 19 C 1.38025 * 119.98971 * 179.75011 * 18 17 16 20 20 C 1.38835 * 120.01045 * 0.52337 * 19 18 17 21 21 N 1.40355 * 119.99113 * 179.72443 * 20 19 18 22 22 C 1.35038 * 127.38500 * 359.73527 * 21 20 19 23 23 N 1.30758 * 107.27696 * 179.83779 * 22 21 20 24 24 N 1.28425 * 110.64123 * 0.44412 * 23 22 21 25 25 N 1.28945 * 110.19603 * 359.72281 * 24 23 22 26 26 C 1.38839 * 120.02100 * 359.75305 * 20 19 18 27 27 C 1.38025 * 120.00801 * 359.97380 * 26 20 19 28 28 H 1.08998 * 109.47135 * 300.00066 * 1 2 3 29 29 H 1.08999 * 109.47121 * 60.00563 * 1 2 3 30 30 H 1.09008 * 109.46901 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47135 * 239.99934 * 2 1 3 32 32 H 1.09003 * 109.46783 * 120.00104 * 2 1 3 33 33 H 1.08999 * 109.47187 * 29.99784 * 4 3 2 34 34 H 1.08998 * 109.46682 * 149.99985 * 4 3 2 35 35 H 0.97001 * 119.99850 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47545 * 60.00214 * 15 13 3 37 37 H 1.08998 * 109.47669 * 300.00156 * 15 13 3 38 38 H 0.97005 * 119.99811 * 0.02562 * 16 15 13 39 39 H 1.08005 * 120.00118 * 359.97438 * 18 17 16 40 40 H 1.07997 * 119.99439 * 180.30070 * 19 18 17 41 41 H 1.08000 * 126.36105 * 0.02562 * 22 21 20 42 42 H 1.08002 * 119.99817 * 179.97438 * 26 20 19 43 43 H 1.08005 * 120.00585 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1495 2.3904 -2.8774 8 7 3.3495 3.1265 -3.6176 9 14 5.9139 2.0974 -3.4162 10 1 6.1418 0.6408 -3.5941 11 1 6.1613 2.7974 -4.7024 12 1 6.8410 2.6208 -2.3810 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9923 1.3059 2.4723 16 7 2.3101 2.2033 3.5858 17 6 2.1498 1.7658 4.9034 18 6 1.6838 0.4820 5.1575 19 6 1.5306 0.0487 6.4590 20 6 1.8318 0.8993 7.5141 21 7 1.6703 0.4601 8.8374 22 6 1.2314 -0.7475 9.2527 23 7 1.2378 -0.7344 10.5602 24 7 1.6423 0.4026 10.9996 25 7 1.9252 1.1853 10.0147 26 6 2.2921 2.1844 7.2607 27 6 2.4510 2.6167 5.9596 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6877 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 3.6756 3.5170 -4.4435 36 1 2.6228 0.4187 2.5299 37 1 0.9445 1.0113 2.5302 38 1 2.6276 3.1026 3.4086 39 1 1.4448 -0.1781 4.3367 40 1 1.1729 -0.9510 6.6566 41 1 0.9334 -1.5721 8.6221 42 1 2.5259 2.8459 8.0818 43 1 2.8087 3.6165 5.7625 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088523680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:02 Heat of formation + Delta-G solvation = 120.875196 kcal Electronic energy + Delta-G solvation = -26641.780302 eV Core-core repulsion = 22725.202480 eV Total energy + Delta-G solvation = -3916.577822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.40390 -40.18694 -39.29564 -36.55096 -35.57048 -34.11822 -32.92350 -32.61069 -31.45862 -30.34615 -29.88991 -27.94194 -26.33522 -24.71337 -24.18733 -23.22844 -22.75435 -22.20350 -21.48174 -19.00972 -18.79386 -17.81933 -16.82696 -16.61800 -16.56472 -16.42078 -15.98979 -15.53199 -15.24204 -14.64923 -14.57345 -14.12817 -13.89204 -13.86522 -13.62093 -13.56513 -13.34605 -13.17203 -12.89730 -12.45613 -12.40790 -12.17621 -11.92827 -11.74415 -11.44326 -11.34165 -11.28223 -11.06860 -10.91907 -10.76256 -10.67265 -10.27566 -10.10333 -9.81513 -9.49980 -9.29255 -8.55652 -7.93449 -7.68072 -6.17128 -4.22764 0.17676 0.91562 1.46225 1.55014 2.00857 2.97356 3.04389 3.22978 3.28337 3.30998 3.37400 3.72349 3.77859 3.97405 4.33090 4.37082 4.50046 4.60304 4.67026 4.82979 5.00308 5.09330 5.09813 5.13838 5.17658 5.19782 5.23896 5.43236 5.48020 5.54477 5.58025 5.81484 5.85321 5.91984 6.04941 6.07652 6.29711 6.36684 6.77411 6.95510 7.24027 7.31643 7.45940 7.77638 8.07299 8.13829 8.14574 8.64778 8.83288 9.42732 10.90922 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.023831 B = 0.002049 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.678213 B =13664.815170 C =14134.457579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.589 5.589 4 C 0.247 3.753 5 C -0.531 4.531 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.499 3.501 14 O -0.537 6.537 15 C 0.097 3.903 16 N -0.718 5.718 17 C 0.244 3.756 18 C -0.184 4.184 19 C -0.061 4.061 20 C 0.043 3.957 21 N -0.304 5.304 22 C 0.213 3.787 23 N -0.335 5.335 24 N -0.045 5.045 25 N -0.086 5.086 26 C -0.043 4.043 27 C -0.178 4.178 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.044 0.956 35 H 0.265 0.735 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.417 0.583 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.236 0.764 42 H 0.139 0.861 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.932 -9.492 16.588 20.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.321 5.321 4 C 0.128 3.872 5 C -0.570 4.570 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.285 3.715 14 O -0.415 6.415 15 C -0.031 4.031 16 N -0.347 5.347 17 C 0.135 3.865 18 C -0.207 4.207 19 C -0.082 4.082 20 C -0.051 4.051 21 N -0.094 5.094 22 C -0.084 4.084 23 N -0.185 5.185 24 N -0.040 5.040 25 N -0.071 5.071 26 C -0.064 4.064 27 C -0.202 4.202 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.256 0.744 39 H 0.156 0.844 40 H 0.151 0.849 41 H 0.252 0.748 42 H 0.157 0.843 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.558 -8.317 17.488 20.445 hybrid contribution 0.965 -0.221 -1.580 1.864 sum -5.593 -8.538 15.908 18.901 Atomic orbital electron populations 1.22234 0.96458 1.01716 1.02474 1.21501 0.93728 0.83888 1.03049 1.48244 1.62907 1.13368 1.07552 1.19333 0.96515 0.93645 0.77737 1.21345 0.96762 1.32365 1.06489 0.92499 1.24939 0.97965 0.94801 0.96342 1.69916 1.35792 1.33085 1.14341 0.86542 0.84570 0.78312 0.77904 1.20193 1.21104 1.20171 1.20087 0.79180 0.87109 0.85155 1.90682 1.46166 1.17980 1.86692 1.21323 1.01879 0.93748 0.86114 1.44718 1.71035 1.17833 1.01140 1.18018 0.91072 0.92662 0.84758 1.20501 1.08169 0.95702 0.96361 1.20528 0.98357 0.98571 0.90774 1.17283 1.13070 0.96644 0.78061 1.48988 1.42584 1.10552 1.07233 1.27307 0.97119 0.90612 0.93378 1.74450 1.21029 1.15349 1.07697 1.78050 1.08742 0.96572 1.20643 1.82630 1.21469 1.17342 0.85681 1.20636 0.95349 0.93123 0.97291 1.20557 1.08189 1.00981 0.90433 0.93067 0.91840 0.91867 0.89485 0.91648 0.94709 0.93790 0.92528 0.89267 0.89318 0.74398 0.84437 0.84947 0.74789 0.84304 0.84463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.24 37.16 0.38 -1.45 16 2 C 0.10 1.34 5.93 -4.04 -0.02 1.32 16 3 N -0.59 -10.78 2.46 -175.06 -0.43 -11.21 16 4 C 0.25 5.91 5.16 -5.19 -0.03 5.89 16 5 C -0.53 -14.11 9.39 -34.44 -0.32 -14.43 16 6 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -25.38 13.29 55.43 0.74 -24.65 16 9 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.50 8.78 7.74 -10.99 -0.09 8.69 16 14 O -0.54 -11.82 15.25 5.56 0.08 -11.73 16 15 C 0.10 1.12 3.94 -5.19 -0.02 1.10 16 16 N -0.72 -8.16 5.71 -59.78 -0.34 -8.50 16 17 C 0.24 2.31 6.65 -83.74 -0.56 1.75 16 18 C -0.18 -1.39 9.30 -39.41 -0.37 -1.75 16 19 C -0.06 -0.40 9.48 -39.44 -0.37 -0.77 16 20 C 0.04 0.38 6.71 -83.51 -0.56 -0.18 16 21 N -0.30 -2.94 3.86 -11.71 -0.05 -2.98 16 22 C 0.21 1.66 12.15 -90.16 -1.10 0.57 16 23 N -0.33 -3.77 12.16 29.64 0.36 -3.41 16 24 N -0.05 -0.59 13.39 60.35 0.81 0.22 16 25 N -0.09 -1.05 13.33 60.35 0.80 -0.25 16 26 C -0.04 -0.39 9.69 -39.44 -0.38 -0.77 16 27 C -0.18 -1.60 9.89 -39.41 -0.39 -1.99 16 28 H 0.05 0.51 7.22 -51.93 -0.38 0.13 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.09 1.23 8.07 -51.93 -0.42 0.81 16 32 H 0.07 0.65 6.44 -51.93 -0.33 0.31 16 33 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 34 H 0.04 1.21 7.42 -51.93 -0.39 0.82 16 35 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.09 0.88 7.23 -51.93 -0.38 0.50 16 37 H 0.09 0.82 6.97 -51.93 -0.36 0.46 16 38 H 0.42 5.33 7.45 -40.82 -0.30 5.03 16 39 H 0.14 0.81 6.72 -52.48 -0.35 0.45 16 40 H 0.13 0.42 6.87 -52.49 -0.36 0.06 16 41 H 0.24 0.53 7.19 -52.49 -0.38 0.16 16 42 H 0.14 1.21 7.76 -52.49 -0.41 0.80 16 43 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -33.86 369.91 -6.68 -40.54 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.29 Total: 0.93 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -3.92 Total: -0.45 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 1.89 Total: -50.77 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.86 -6.68 -40.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088523680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.412 kcal (2) G-P(sol) polarization free energy of solvation -33.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds