Wall clock time and date at job start Tue Mar 31 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38233 * 119.99615 * 2 1 4 4 C 1.38233 * 119.99357 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00394 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00180 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.47099 * 84.49629 * 6 5 4 8 8 C 1.34421 * 124.35135 * 85.36269 * 7 6 5 9 9 O 1.21278 * 124.94025 * 359.63061 * 8 7 6 10 10 C 1.51281 * 110.11657 * 179.59274 * 8 7 6 11 11 C 1.54629 * 104.19499 * 343.74562 * 10 8 7 12 12 C 1.46764 * 124.35206 * 265.36364 * 7 6 5 13 13 H 1.09003 * 110.32351 * 77.97526 * 12 7 6 14 14 C 1.50703 * 110.24342 * 316.02145 * 12 7 6 15 15 O 1.21286 * 119.99916 * 336.11229 * 14 12 7 16 16 N 1.34772 * 120.00044 * 156.11850 * 14 12 7 17 17 C 1.46507 * 120.00081 * 180.27194 * 16 14 12 18 18 C 1.52994 * 109.47178 * 179.72113 * 17 16 14 19 19 C 1.50706 * 109.46909 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99853 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99855 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00057 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00017 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46883 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46804 * 120.00211 * 23 21 19 26 26 H 1.48501 * 109.47215 * 240.00519 * 23 21 19 27 27 C 1.38231 * 119.99902 * 0.24982 * 5 4 3 28 28 C 1.38235 * 119.99704 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47181 * 90.00410 * 1 2 3 30 30 H 1.09006 * 109.46997 * 209.99936 * 1 2 3 31 31 H 1.08994 * 109.47556 * 330.00153 * 1 2 3 32 32 H 1.08000 * 120.00261 * 359.97438 * 3 2 1 33 33 H 1.08005 * 119.99703 * 179.97438 * 4 3 2 34 34 H 1.08996 * 109.47119 * 324.49892 * 6 5 4 35 35 H 1.08994 * 109.47223 * 204.49265 * 6 5 4 36 36 H 1.09001 * 110.48547 * 225.06905 * 10 8 7 37 37 H 1.08997 * 110.59683 * 102.48391 * 10 8 7 38 38 H 1.08993 * 110.97422 * 266.68156 * 11 10 8 39 39 H 1.09000 * 110.99761 * 142.92996 * 11 10 8 40 40 H 0.96993 * 120.00328 * 359.97438 * 16 14 12 41 41 H 1.09005 * 109.46664 * 299.72472 * 17 16 14 42 42 H 1.09000 * 109.47230 * 59.71858 * 17 16 14 43 43 H 1.08995 * 109.47623 * 299.99916 * 18 17 16 44 44 H 1.09005 * 109.46976 * 60.00129 * 18 17 16 45 45 H 0.97001 * 120.00015 * 179.97438 * 22 21 19 46 46 H 1.08004 * 120.00205 * 179.72986 * 27 5 4 47 47 H 1.07995 * 120.00241 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1971 0.0005 5 6 4.2716 0.0000 0.0005 6 6 5.7787 0.0000 0.0005 7 7 6.2670 0.1325 1.3754 8 6 6.4352 -0.8971 2.2231 9 8 6.1998 -2.0577 1.9616 10 6 6.9619 -0.3976 3.5504 11 6 7.4789 1.0266 3.2414 12 6 6.6354 1.4063 2.0043 13 1 5.7415 1.9503 2.3097 14 6 7.4527 2.2408 1.0520 15 8 8.0729 1.7070 0.1568 16 7 7.4945 3.5803 1.1952 17 6 8.2843 4.3921 0.2659 18 6 8.1564 5.8692 0.6435 19 6 8.9693 6.7041 -0.3122 20 1 9.5215 6.2287 -1.1093 21 6 9.0071 8.0750 -0.1694 22 7 8.3342 8.6539 0.8010 23 14 10.0141 9.1100 -1.3543 24 1 10.6719 8.2248 -2.3489 25 1 9.1219 10.0665 -2.0573 26 1 11.0487 9.8614 -0.5992 27 6 3.5805 -1.1971 -0.0052 28 6 2.1981 -1.1972 0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 1.6581 2.1325 -0.0004 33 1 4.1205 2.1325 0.0001 34 1 6.1420 0.8366 -0.5962 35 1 6.1420 -0.9351 -0.4255 36 1 7.7765 -1.0315 3.9006 37 1 6.1628 -0.3612 4.2907 38 1 8.5415 1.0119 2.9995 39 1 7.2793 1.7033 4.0723 40 1 6.9983 4.0072 1.9109 41 1 9.3308 4.0923 0.3207 42 1 7.9165 4.2434 -0.7494 43 1 7.1099 6.1689 0.5887 44 1 8.5242 6.0178 1.6587 45 1 8.3611 9.6183 0.9017 46 1 4.1205 -2.1325 -0.0096 47 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096009683.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:46 Heat of formation + Delta-G solvation = -59.516285 kcal Electronic energy + Delta-G solvation = -27849.549382 eV Core-core repulsion = 23996.396791 eV Total energy + Delta-G solvation = -3853.152591 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.07422 -39.41749 -38.89358 -36.30564 -34.99581 -34.41601 -32.94430 -31.86960 -31.04127 -30.13538 -28.32618 -28.06790 -24.94025 -24.77039 -22.97573 -22.58099 -21.15445 -21.11045 -20.50591 -19.34912 -17.65062 -17.04273 -16.47034 -16.20894 -16.04766 -15.40030 -15.38064 -15.24470 -14.99910 -14.62181 -14.40545 -14.01956 -13.71381 -13.68062 -13.58878 -13.50361 -13.21771 -12.82799 -12.77945 -12.59566 -12.36651 -12.04434 -12.01383 -11.84345 -11.40752 -11.31955 -11.28717 -11.10747 -11.03225 -10.69337 -10.43432 -10.04365 -9.92556 -9.64212 -9.34052 -9.02882 -8.82132 -8.67621 -8.66476 -8.45989 -6.16340 -4.19373 1.10573 1.30241 2.46033 2.59336 2.88099 3.23823 3.31725 3.35773 3.46324 3.72682 4.12117 4.23420 4.35990 4.59463 4.63606 4.65767 4.75173 4.82050 4.91736 4.94909 4.99178 5.18948 5.21168 5.30239 5.34264 5.35664 5.42976 5.54942 5.57217 5.61922 5.69011 5.70793 5.95023 5.96038 6.19055 6.22404 6.28742 6.29820 6.45298 6.49071 6.61220 6.72789 6.88550 6.98458 7.42064 7.51684 7.78982 7.82412 8.04355 8.18734 8.42229 8.86689 9.46135 10.95142 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012075 B = 0.002766 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.272206 B =10119.054505 C =11673.888176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.123 4.123 4 C -0.098 4.098 5 C -0.114 4.114 6 C 0.166 3.834 7 N -0.589 5.589 8 C 0.522 3.478 9 O -0.530 6.530 10 C -0.153 4.153 11 C -0.119 4.119 12 C 0.111 3.889 13 H 0.100 0.900 14 C 0.498 3.502 15 O -0.536 6.536 16 N -0.715 5.715 17 C 0.122 3.878 18 C 0.013 3.987 19 C -0.522 4.522 20 H 0.060 0.940 21 C 0.060 3.940 22 N -0.893 5.893 23 Si 0.896 3.104 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 C -0.091 4.091 28 C -0.125 4.125 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.399 0.601 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.262 0.738 46 H 0.125 0.875 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.335 -16.742 5.337 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.141 4.141 4 C -0.117 4.117 5 C -0.115 4.115 6 C 0.045 3.955 7 N -0.321 5.321 8 C 0.310 3.690 9 O -0.407 6.407 10 C -0.193 4.193 11 C -0.157 4.157 12 C 0.003 3.997 13 H 0.118 0.882 14 C 0.281 3.719 15 O -0.413 6.413 16 N -0.365 5.365 17 C 0.000 4.000 18 C -0.024 4.024 19 C -0.561 4.561 20 H 0.078 0.922 21 C -0.142 4.142 22 N -0.532 5.532 23 Si 0.724 3.276 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.110 4.110 28 C -0.143 4.143 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.233 0.767 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.072 0.928 46 H 0.143 0.857 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.042 -17.563 4.527 21.770 hybrid contribution 0.271 1.118 -0.270 1.181 sum -11.771 -16.445 4.257 20.667 Atomic orbital electron populations 1.20794 0.91303 1.02695 1.02292 1.19956 0.96023 0.93272 0.99345 1.21024 0.94096 0.97561 1.01448 1.21076 0.94226 0.97562 0.98818 1.20267 0.95986 0.93483 1.01740 1.20328 0.88684 1.04736 0.81718 1.47942 1.64274 1.06645 1.13261 1.20821 0.76746 0.84817 0.86621 1.90700 1.52401 1.17501 1.80088 1.22349 1.03214 0.97283 0.96419 1.22589 1.00690 0.96500 0.95962 1.21703 0.98548 0.86241 0.93255 0.88179 1.20515 0.82495 0.83183 0.85662 1.90712 1.44550 1.72094 1.33926 1.46353 1.50453 1.05926 1.33770 1.21776 0.94015 0.92706 0.91546 1.19325 0.98003 0.87404 0.97716 1.21071 1.29589 0.91516 1.13932 0.92214 1.24990 0.95591 0.98048 0.95603 1.69956 1.41612 1.10330 1.31312 0.86468 0.79974 0.80231 0.80976 1.19577 1.20902 1.20890 1.21139 0.94070 0.97838 0.97945 1.21016 0.94134 0.97451 1.01713 0.91190 0.91653 0.91533 0.85980 0.86064 0.88310 0.89339 0.87675 0.87518 0.89158 0.88056 0.76711 0.92393 0.92439 0.95912 0.95872 0.92844 0.85739 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 2 C -0.09 -0.86 5.88 -104.62 -0.62 -1.48 16 3 C -0.12 -1.30 9.70 -39.58 -0.38 -1.69 16 4 C -0.10 -1.14 9.72 -39.58 -0.38 -1.52 16 5 C -0.11 -1.40 5.46 -104.62 -0.57 -1.97 16 6 C 0.17 2.19 5.46 -5.19 -0.03 2.16 16 7 N -0.59 -7.42 2.58 -167.56 -0.43 -7.86 16 8 C 0.52 6.80 8.02 -10.86 -0.09 6.71 16 9 O -0.53 -8.59 17.66 5.56 0.10 -8.49 16 10 C -0.15 -1.33 6.86 -26.74 -0.18 -1.52 16 11 C -0.12 -1.01 6.67 -25.10 -0.17 -1.18 16 12 C 0.11 1.20 3.70 -68.16 -0.25 0.95 16 13 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 14 C 0.50 7.26 6.32 -10.99 -0.07 7.20 16 15 O -0.54 -9.89 15.04 5.55 0.08 -9.80 16 16 N -0.71 -10.72 5.56 -60.29 -0.33 -11.05 16 17 C 0.12 2.36 5.61 -4.04 -0.02 2.34 16 18 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 19 C -0.52 -13.91 9.11 -34.44 -0.31 -14.22 16 20 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 23 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C -0.09 -1.09 9.68 -39.58 -0.38 -1.47 16 28 C -0.13 -1.32 9.70 -39.58 -0.38 -1.71 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 34 H 0.10 1.41 6.24 -51.93 -0.32 1.08 16 35 H 0.09 1.21 7.94 -51.93 -0.41 0.80 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.87 7.90 -51.93 -0.41 0.45 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.40 4.98 8.47 -40.82 -0.35 4.63 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 47 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 395.74 15.07 5.96 5.96 Total: -1.00 -32.98 395.74 -10.00 -42.98 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.37 Total: 3.17 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -3.73 Total: -6.19 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.03 Total: -43.41 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.18 Total: -18.30 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.98 -10.00 -42.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096009683.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.539 kcal (2) G-P(sol) polarization free energy of solvation -32.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds