Wall clock time and date at job start Tue Mar 31 2020 05:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38234 * 119.99714 * 2 1 4 4 C 1.38237 * 119.99596 * 180.02562 * 3 2 1 5 5 C 1.38233 * 120.00214 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00046 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47154 * 90.00512 * 6 5 4 8 8 C 1.34425 * 124.34941 * 270.00144 * 7 6 5 9 9 O 1.21281 * 124.93752 * 359.62389 * 8 7 6 10 10 C 1.51279 * 110.11554 * 179.59251 * 8 7 6 11 11 C 1.54627 * 104.19680 * 343.74173 * 10 8 7 12 12 C 1.46765 * 124.35423 * 89.99896 * 7 6 5 13 13 H 1.09006 * 110.31683 * 316.05699 * 12 7 6 14 14 C 1.50700 * 110.24520 * 78.01501 * 12 7 6 15 15 O 1.21283 * 119.99803 * 357.50415 * 14 12 7 16 16 N 1.34777 * 119.99675 * 177.78290 * 14 12 7 17 17 C 1.46497 * 119.99525 * 179.72583 * 16 14 12 18 18 C 1.52999 * 109.46992 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.47525 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99441 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00641 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99481 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00577 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47293 * 59.99047 * 23 21 19 25 25 H 1.48497 * 109.47533 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46772 * 299.99795 * 23 21 19 27 27 C 1.38233 * 120.00232 * 0.25861 * 5 4 3 28 28 C 1.38235 * 119.99807 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47220 * 90.00530 * 1 2 3 30 30 H 1.09006 * 109.47320 * 210.00071 * 1 2 3 31 31 H 1.08996 * 109.47645 * 329.99947 * 1 2 3 32 32 H 1.08000 * 120.00309 * 359.97438 * 3 2 1 33 33 H 1.07998 * 119.99630 * 179.97438 * 4 3 2 34 34 H 1.08996 * 109.47441 * 330.00460 * 6 5 4 35 35 H 1.09004 * 109.47081 * 210.00033 * 6 5 4 36 36 H 1.09005 * 110.48614 * 225.06687 * 10 8 7 37 37 H 1.08995 * 110.48891 * 102.42884 * 10 8 7 38 38 H 1.08990 * 110.97201 * 266.68138 * 11 10 8 39 39 H 1.09005 * 110.99523 * 142.92984 * 11 10 8 40 40 H 0.97000 * 119.99894 * 359.71837 * 16 14 12 41 41 H 1.08995 * 109.47421 * 299.99467 * 17 16 14 42 42 H 1.09001 * 109.47621 * 60.00103 * 17 16 14 43 43 H 1.09009 * 109.47378 * 299.99899 * 18 17 16 44 44 H 1.08993 * 109.47209 * 59.99808 * 18 17 16 45 45 H 0.97000 * 120.00289 * 180.02562 * 22 21 19 46 46 H 1.07996 * 120.00590 * 179.72686 * 27 5 4 47 47 H 1.07994 * 120.00370 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1971 -0.0005 5 6 4.2716 0.0000 -0.0005 6 6 5.7786 0.0000 -0.0017 7 7 6.2680 0.0005 1.3791 8 6 6.5214 1.1106 2.0936 9 8 6.3842 2.2449 1.6868 10 6 7.0017 0.7392 3.4792 11 6 6.6043 -0.7472 3.6326 12 6 6.5447 -1.2108 2.1602 13 1 5.7444 -1.9387 2.0260 14 6 7.8657 -1.8072 1.7473 15 8 8.5043 -1.3024 0.8482 16 7 8.3346 -2.9047 2.3733 17 6 9.6158 -3.4880 1.9679 18 6 9.9134 -4.7155 2.8313 19 6 11.2317 -5.3152 2.4147 20 1 11.8002 -4.8659 1.6139 21 6 11.7116 -6.4379 3.0552 22 7 11.0190 -6.9852 4.0301 23 14 13.3460 -7.1808 2.5393 24 1 14.4250 -6.1764 2.7190 25 1 13.6347 -8.3722 3.3773 26 1 13.2778 -7.5838 1.1116 27 6 3.5805 -1.1971 -0.0054 28 6 2.1981 -1.1972 -0.0005 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 1.6581 2.1325 -0.0004 33 1 4.1204 2.1325 -0.0010 34 1 6.1416 0.8898 -0.5161 35 1 6.1416 -0.8902 -0.5154 36 1 6.5010 1.3476 4.2324 37 1 8.0831 0.8544 3.5518 38 1 5.6299 -0.8431 4.1115 39 1 7.3644 -1.2998 4.1850 40 1 7.8238 -3.3084 3.0924 41 1 9.5649 -3.7841 0.9202 42 1 10.4083 -2.7512 2.0992 43 1 9.9645 -4.4190 3.8791 44 1 9.1211 -5.4524 2.7005 45 1 11.3567 -7.7748 4.4810 46 1 4.1205 -2.1324 -0.0099 47 1 1.6582 -2.1324 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096009684.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:49 Heat of formation + Delta-G solvation = -59.251118 kcal Electronic energy + Delta-G solvation = -27672.602580 eV Core-core repulsion = 23819.461487 eV Total energy + Delta-G solvation = -3853.141093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.08397 -39.51944 -38.77633 -36.28279 -34.98281 -34.45398 -32.93355 -31.89529 -31.13135 -30.04879 -28.37419 -27.99270 -24.98379 -24.77221 -23.05246 -22.69899 -21.19657 -21.15584 -20.41558 -19.32841 -17.61356 -17.09456 -16.50486 -16.23720 -15.86733 -15.55850 -15.35076 -15.30666 -14.86916 -14.62276 -14.44538 -14.09220 -13.83930 -13.72558 -13.62217 -13.40542 -13.12066 -12.88478 -12.78064 -12.71305 -12.34339 -12.14742 -11.96173 -11.62089 -11.50815 -11.44729 -11.27713 -11.12110 -11.06393 -10.71264 -10.40177 -10.03745 -9.91815 -9.66815 -9.37837 -9.11921 -8.82816 -8.69234 -8.64551 -8.43684 -6.14810 -4.17924 1.02152 1.21127 2.49394 2.72235 2.81265 3.27577 3.31764 3.34424 3.53136 3.65282 4.12316 4.24259 4.36847 4.53614 4.57349 4.60452 4.73539 4.79830 4.83121 4.91825 5.01413 5.21293 5.22388 5.23225 5.25538 5.27822 5.47367 5.49209 5.52435 5.60341 5.60692 5.68280 5.86179 5.87567 6.19593 6.21174 6.25078 6.30904 6.36908 6.42132 6.64071 6.76941 6.79765 6.97580 7.43625 7.53551 7.82151 7.85426 8.07179 8.20727 8.47858 8.87618 9.47292 10.96590 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017679 B = 0.002339 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.409458 B =11969.411869 C =12750.081322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.124 4.124 4 C -0.092 4.092 5 C -0.113 4.113 6 C 0.170 3.830 7 N -0.587 5.587 8 C 0.525 3.475 9 O -0.532 6.532 10 C -0.156 4.156 11 C -0.123 4.123 12 C 0.111 3.889 13 H 0.112 0.888 14 C 0.492 3.508 15 O -0.536 6.536 16 N -0.717 5.717 17 C 0.122 3.878 18 C 0.014 3.986 19 C -0.523 4.523 20 H 0.058 0.942 21 C 0.060 3.940 22 N -0.894 5.894 23 Si 0.897 3.103 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 C -0.101 4.101 28 C -0.124 4.124 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.398 0.602 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.263 0.737 46 H 0.122 0.878 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.534 12.768 -2.756 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.142 4.142 4 C -0.111 4.111 5 C -0.114 4.114 6 C 0.049 3.951 7 N -0.319 5.319 8 C 0.314 3.686 9 O -0.408 6.408 10 C -0.196 4.196 11 C -0.161 4.161 12 C 0.002 3.998 13 H 0.130 0.870 14 C 0.275 3.725 15 O -0.413 6.413 16 N -0.368 5.368 17 C 0.000 4.000 18 C -0.024 4.024 19 C -0.562 4.562 20 H 0.077 0.923 21 C -0.142 4.142 22 N -0.532 5.532 23 Si 0.725 3.275 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.201 1.201 27 C -0.119 4.119 28 C -0.142 4.142 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.232 0.768 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.073 0.927 46 H 0.140 0.860 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.128 13.585 -3.585 24.547 hybrid contribution 0.714 -0.908 0.102 1.160 sum -19.414 12.677 -3.483 23.447 Atomic orbital electron populations 1.20797 0.91289 1.02748 1.02292 1.19959 0.96038 0.93279 0.99285 1.21034 0.94143 0.97499 1.01512 1.21165 0.94084 0.97980 0.97829 1.20262 0.95951 0.93486 1.01675 1.20224 0.88634 1.04640 0.81593 1.47870 1.64545 1.05934 1.13569 1.20833 0.75788 0.84226 0.87787 1.90693 1.53516 1.20890 1.75711 1.22361 1.04184 0.97231 0.95830 1.22649 1.04378 0.95721 0.93355 1.21647 0.96498 0.89089 0.92526 0.86994 1.20819 0.87327 0.81213 0.83108 1.90710 1.59172 1.61266 1.30135 1.46330 1.24278 1.28381 1.37831 1.21753 0.81896 0.96660 0.99705 1.19316 0.97467 0.90725 0.94879 1.20999 1.04756 1.11622 1.18839 0.92335 1.24987 0.97608 0.96759 0.94872 1.69936 1.38413 1.21823 1.23063 0.86572 0.83752 0.78587 0.78630 1.20098 1.21217 1.20104 1.21076 0.94206 0.97481 0.99159 1.21011 0.94089 0.97519 1.01545 0.91193 0.91534 0.91604 0.86176 0.85646 0.89006 0.89136 0.87654 0.87488 0.88732 0.88199 0.76778 0.92518 0.92484 0.95890 0.95919 0.92745 0.86006 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.01 36.00 0.36 -0.36 16 2 C -0.09 -0.76 5.88 -104.63 -0.62 -1.37 16 3 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 4 C -0.09 -1.01 9.70 -39.58 -0.38 -1.39 16 5 C -0.11 -1.23 5.46 -104.63 -0.57 -1.80 16 6 C 0.17 2.05 5.86 -5.19 -0.03 2.02 16 7 N -0.59 -7.35 2.12 -167.55 -0.36 -7.70 16 8 C 0.53 7.21 8.02 -10.86 -0.09 7.13 16 9 O -0.53 -8.93 17.59 5.56 0.10 -8.83 16 10 C -0.16 -1.59 6.85 -26.74 -0.18 -1.77 16 11 C -0.12 -1.03 6.66 -25.10 -0.17 -1.20 16 12 C 0.11 1.20 3.50 -68.16 -0.24 0.96 16 13 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 14 C 0.49 7.34 7.17 -10.98 -0.08 7.26 16 15 O -0.54 -10.27 16.32 5.55 0.09 -10.18 16 16 N -0.72 -10.90 5.26 -60.30 -0.32 -11.22 16 17 C 0.12 2.41 5.61 -4.04 -0.02 2.39 16 18 C 0.01 0.32 5.09 -27.88 -0.14 0.17 16 19 C -0.52 -14.03 9.11 -34.44 -0.31 -14.35 16 20 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16 23 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 27 C -0.10 -0.98 9.70 -39.58 -0.38 -1.36 16 28 C -0.12 -1.11 9.70 -39.58 -0.38 -1.49 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.09 1.19 7.87 -51.93 -0.41 0.78 16 35 H 0.09 1.08 8.08 -51.93 -0.42 0.66 16 36 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.80 7.48 -51.93 -0.39 0.41 16 40 H 0.40 4.98 8.27 -40.82 -0.34 4.65 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.02 0.55 8.14 -51.92 -0.42 0.13 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 47 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 398.36 15.07 6.00 6.00 Total: -1.00 -33.54 398.36 -9.92 -43.47 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.43 Total: 2.36 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -3.72 Total: -5.19 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.06 Total: -43.51 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.19 Total: -19.01 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.54 -9.92 -43.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096009684.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.785 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds