Wall clock time and date at job start Tue Mar 31 2020 05:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.50512 * 2 1 4 4 C 1.53053 * 109.48843 * 120.04789 * 2 1 3 5 5 N 1.46954 * 109.36402 * 178.37115 * 4 2 1 6 6 C 1.38410 * 111.00040 * 176.81717 * 5 4 2 7 7 N 1.32732 * 120.17442 * 61.81126 * 6 5 4 8 8 C 1.32110 * 119.99464 * 179.72108 * 7 6 5 9 9 C 1.38647 * 120.35875 * 0.56361 * 8 7 6 10 10 N 1.31838 * 120.34427 * 359.71161 * 9 8 7 11 11 C 1.33034 * 119.99775 * 0.02562 * 10 9 8 12 12 C 1.43200 * 120.17676 * 179.97438 * 11 10 9 13 13 N 5.07070 * 139.57536 * 55.73448 * 2 1 3 14 14 C 1.46959 * 110.87945 * 300.67758 * 5 4 2 15 15 C 1.53056 * 109.36041 * 59.32647 * 14 5 4 16 16 N 1.46952 * 109.49271 * 239.94260 * 2 1 3 17 17 C 1.46904 * 110.99826 * 56.83935 * 16 2 1 18 18 C 1.50694 * 109.46942 * 189.84627 * 17 16 2 19 19 O 1.21291 * 120.00185 * 0.02562 * 18 17 16 20 20 N 1.34775 * 119.99886 * 180.02562 * 18 17 16 21 21 C 1.37104 * 120.00073 * 179.97438 * 20 18 17 22 22 H 1.07997 * 120.00016 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00023 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00081 * 359.73305 * 23 21 20 25 25 Si 1.86797 * 120.00058 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47350 * 60.00395 * 25 23 21 27 27 H 1.48505 * 109.47289 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47307 * 300.00237 * 25 23 21 29 29 H 1.08995 * 109.46633 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46699 * 300.05494 * 1 2 3 31 31 H 1.08990 * 109.46853 * 60.06153 * 1 2 3 32 32 H 1.09003 * 109.48650 * 58.40109 * 4 2 1 33 33 H 1.09002 * 109.50796 * 298.35041 * 4 2 1 34 34 H 1.08001 * 119.82310 * 180.27213 * 8 7 6 35 35 H 1.07994 * 119.82672 * 179.70079 * 9 8 7 36 36 H 1.08988 * 109.49350 * 299.35666 * 14 5 4 37 37 H 1.08998 * 109.50941 * 179.29571 * 14 5 4 38 38 H 1.09001 * 109.48525 * 181.62802 * 15 14 5 39 39 H 1.08995 * 109.49277 * 61.56278 * 15 14 5 40 40 H 1.09001 * 109.46479 * 69.84869 * 17 16 2 41 41 H 1.08998 * 109.47023 * 309.84909 * 17 16 2 42 42 H 0.97003 * 120.00392 * 359.97438 * 20 18 17 43 43 H 0.97001 * 120.00409 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0407 -0.7225 1.2489 5 7 3.5097 -0.7551 1.2266 6 6 4.0104 -1.3391 2.3772 7 7 3.7198 -2.6018 2.6653 8 6 4.2041 -3.1574 3.7617 9 6 5.0072 -2.4250 4.6224 10 7 5.3003 -1.1682 4.3525 11 6 4.8243 -0.5964 3.2497 12 6 5.1397 0.7686 2.9530 13 7 5.3902 1.8513 2.7174 14 6 4.0000 -1.4491 0.0276 15 6 3.4895 -0.7265 -1.2213 16 7 2.0204 -0.6938 -1.1990 17 6 1.4889 -0.0741 -2.4202 18 6 1.8102 -0.9458 -3.6067 19 8 2.4214 -1.9818 -3.4503 20 7 1.4184 -0.5744 -4.8416 21 6 1.7112 -1.3672 -5.9211 22 1 2.2553 -2.2896 -5.7819 23 6 1.3068 -0.9845 -7.1942 24 7 0.6392 0.1347 -7.3628 25 14 1.7050 -2.0651 -8.6649 26 1 1.0862 -3.4021 -8.4789 27 1 1.1682 -1.4383 -9.8996 28 1 3.1775 -2.2137 -8.7858 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5147 0.8895 31 1 -0.3633 0.5128 -0.8905 32 1 1.6544 -1.7417 1.2629 33 1 1.7022 -0.1931 2.1396 34 1 3.9694 -4.1863 3.9912 35 1 5.3946 -2.8863 5.5188 36 1 3.6361 -2.4764 0.0276 37 1 5.0900 -1.4493 0.0273 38 1 3.8280 -1.2562 -2.1118 39 1 3.8756 0.2927 -1.2353 40 1 1.9432 0.9073 -2.5568 41 1 0.4080 0.0350 -2.3315 42 1 0.9293 0.2539 -4.9667 43 1 0.3565 0.4018 -8.2515 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155615690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:00 Heat of formation + Delta-G solvation = 81.857927 kcal Electronic energy + Delta-G solvation = -27801.727764 eV Core-core repulsion = 23883.458026 eV Total energy + Delta-G solvation = -3918.269738 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.88388 -39.65182 -38.00181 -36.84687 -36.02070 -34.35461 -33.89842 -32.31312 -31.62114 -31.18141 -28.64975 -27.04576 -26.12128 -25.69160 -24.15189 -23.24913 -21.96869 -20.12448 -19.74054 -19.15706 -18.30959 -17.85732 -17.61193 -16.38307 -15.85566 -15.73502 -15.31829 -15.07070 -14.86491 -14.62071 -14.33824 -14.01593 -13.71682 -13.60223 -13.46740 -13.45301 -13.25722 -13.03892 -12.60953 -12.23085 -12.19144 -12.14813 -11.87690 -11.64942 -11.48525 -11.43284 -11.09292 -11.04655 -10.82621 -10.60083 -10.43990 -10.21024 -9.90011 -9.64870 -9.45976 -8.96820 -8.44482 -7.97950 -7.85459 -6.41209 -3.82062 -0.16711 0.44550 2.29993 2.50034 2.85053 3.20041 3.25585 3.25939 3.30012 3.36032 3.69763 3.88645 3.92806 3.97117 4.22520 4.30059 4.63368 4.69833 4.72125 4.94020 5.02829 5.14156 5.25377 5.26099 5.40652 5.44172 5.53001 5.55070 5.64576 5.77872 5.82235 5.88460 6.01066 6.10389 6.23745 6.29225 6.34063 6.51275 6.56710 6.74497 7.11275 7.17616 7.26050 7.36817 7.55359 8.06610 8.62163 9.18412 9.55002 10.06648 10.76460 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.021634 B = 0.002521 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.966207 B =11102.716901 C =11352.674997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.082 3.918 3 H 0.048 0.952 4 C 0.072 3.928 5 N -0.495 5.495 6 C 0.307 3.693 7 N -0.456 5.456 8 C 0.095 3.905 9 C 0.050 3.950 10 N -0.401 5.401 11 C 0.165 3.835 12 C 0.279 3.721 13 N -0.376 5.376 14 C 0.067 3.933 15 C 0.056 3.944 16 N -0.510 5.510 17 C 0.042 3.958 18 C 0.445 3.555 19 O -0.579 6.579 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.180 0.820 35 H 0.184 0.816 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.115 0.885 39 H 0.033 0.967 40 H 0.048 0.952 41 H 0.095 0.905 42 H 0.392 0.608 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.483 -2.973 23.258 23.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 H 0.066 0.934 4 C -0.055 4.055 5 N -0.220 5.220 6 C 0.074 3.926 7 N -0.173 5.173 8 C -0.069 4.069 9 C -0.113 4.113 10 N -0.117 5.117 11 C 0.023 3.977 12 C -0.039 4.039 13 N -0.053 5.053 14 C -0.059 4.059 15 C -0.072 4.072 16 N -0.235 5.235 17 C -0.089 4.089 18 C 0.230 3.770 19 O -0.463 6.463 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.197 0.803 35 H 0.201 0.799 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.133 0.867 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.113 0.887 42 H 0.225 0.775 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.183 -1.893 22.774 23.232 hybrid contribution -0.227 -0.398 -0.726 0.859 sum 3.956 -2.291 22.048 22.517 Atomic orbital electron populations 1.21893 0.93621 1.03078 1.01988 1.21655 0.95573 0.95835 0.89650 0.93391 1.22273 0.83547 1.01509 0.98134 1.60316 1.11165 1.50659 0.99831 1.20718 0.91760 0.87816 0.92270 1.68844 1.20093 1.10590 1.17782 1.24082 0.91967 1.01724 0.89113 1.23843 0.96716 0.89667 1.01077 1.68350 1.17272 1.11611 1.14447 1.17060 0.98610 0.89011 0.93029 1.24275 0.94365 0.91279 0.93967 1.81226 1.06506 1.10768 1.06795 1.22294 0.99361 0.97493 0.86722 1.22344 0.87203 0.99256 0.98371 1.61782 1.08524 1.52805 1.00377 1.21943 1.01252 0.95806 0.89940 1.19722 0.85341 0.88186 0.83749 1.90473 1.44771 1.26137 1.84909 1.41863 1.50231 1.22767 1.05176 1.19637 1.33929 1.04723 0.84533 0.87974 1.25253 0.96797 0.96839 0.99032 1.69603 1.38235 1.22344 1.24156 0.85928 0.78850 0.79660 0.79840 1.19900 1.21004 1.19942 0.91379 0.92244 0.91562 0.91510 0.90547 0.80281 0.79898 0.91350 0.90484 0.86692 0.94854 0.93418 0.88717 0.77503 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.89 37.16 0.33 -1.33 16 2 C 0.08 1.06 2.56 -67.65 -0.17 0.89 16 3 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 4 C 0.07 0.85 4.72 -3.77 -0.02 0.83 16 5 N -0.50 -6.12 4.06 -172.67 -0.70 -6.82 16 6 C 0.31 3.36 5.32 -154.78 -0.82 2.53 16 7 N -0.46 -4.42 9.81 -11.97 -0.12 -4.54 16 8 C 0.10 0.55 11.22 -17.28 -0.19 0.35 16 9 C 0.05 0.26 11.21 -17.40 -0.20 0.07 16 10 N -0.40 -3.59 10.42 -10.74 -0.11 -3.70 16 11 C 0.17 1.76 6.61 -84.55 -0.56 1.20 16 12 C 0.28 3.49 15.05 -22.47 -0.34 3.15 16 13 N -0.38 -5.34 18.54 41.84 0.78 -4.57 16 14 C 0.07 0.92 5.44 -3.76 -0.02 0.90 16 15 C 0.06 0.91 5.26 -3.77 -0.02 0.89 16 16 N -0.51 -8.28 4.26 -227.92 -0.97 -9.25 16 17 C 0.04 0.73 5.21 -4.98 -0.03 0.71 16 18 C 0.44 10.25 7.48 -10.99 -0.08 10.17 16 19 O -0.58 -15.09 13.90 5.55 0.08 -15.02 16 20 N -0.56 -14.10 5.29 -10.97 -0.06 -14.16 16 21 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 22 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 25 Si 0.93 20.98 29.55 -169.99 -5.02 15.95 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.75 6.15 -51.93 -0.32 0.43 16 32 H 0.07 0.85 7.97 -51.93 -0.41 0.43 16 33 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 34 H 0.18 0.37 8.06 -52.49 -0.42 -0.05 16 35 H 0.18 0.23 8.06 -52.49 -0.42 -0.19 16 36 H 0.07 1.02 7.97 -51.94 -0.41 0.61 16 37 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16 38 H 0.12 2.22 5.84 -51.93 -0.30 1.92 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 41 H 0.09 1.51 5.74 -51.93 -0.30 1.21 16 42 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 43 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 364.44 15.07 5.49 5.49 Total: -1.00 -32.73 364.44 -7.66 -40.38 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.38 Total: 7.47 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: -2.36 Total: 12.50 kcal Atomic # 7 Polarization: -66.31 SS G_CDS: -0.46 Total: -66.77 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: 0.08 Total: -15.02 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.73 -7.66 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155615690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.242 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds