Wall clock time and date at job start Tue Mar 31 2020 05:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47032 * 2 1 4 4 C 1.50692 * 109.47421 * 120.00368 * 2 1 3 5 5 O 1.21281 * 120.00211 * 100.75609 * 4 2 1 6 6 N 1.34774 * 120.00303 * 280.76107 * 4 2 1 7 7 C 1.47070 * 136.05559 * 355.11219 * 6 4 2 8 8 C 1.53754 * 87.89066 * 152.95965 * 7 6 4 9 9 O 1.42903 * 114.39117 * 272.67590 * 8 7 6 10 10 C 1.50703 * 114.26701 * 139.79051 * 8 7 6 11 11 H 1.08005 * 119.99564 * 266.47338 * 10 8 7 12 12 C 1.37876 * 119.99952 * 86.47719 * 10 8 7 13 13 N 1.31511 * 119.99833 * 359.97438 * 12 10 8 14 14 Si 1.86795 * 119.99859 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47498 * 59.99394 * 14 12 10 16 16 H 1.48503 * 109.47107 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47130 * 299.99446 * 14 12 10 18 18 C 1.47067 * 136.06141 * 175.47116 * 6 4 2 19 19 N 1.46906 * 109.47077 * 240.00735 * 2 1 3 20 20 C 1.47162 * 111.00011 * 54.03517 * 19 2 1 21 21 C 1.52891 * 108.50570 * 52.16014 * 20 19 2 22 22 C 1.50717 * 109.96201 * 50.38673 * 21 20 19 23 23 C 1.38677 * 118.49334 * 163.22499 * 22 21 20 24 24 C 1.38030 * 120.35267 * 179.72177 * 23 22 21 25 25 C 1.38268 * 119.82604 * 359.79723 * 24 23 22 26 26 C 1.38013 * 119.86660 * 0.56340 * 25 24 23 27 27 C 1.37832 * 121.65902 * 343.10295 * 22 21 20 28 28 C 1.46635 * 110.99994 * 177.02910 * 19 2 1 29 29 H 1.08996 * 109.47055 * 183.35432 * 1 2 3 30 30 H 1.08996 * 109.47142 * 303.35882 * 1 2 3 31 31 H 1.09002 * 109.47030 * 63.35647 * 1 2 3 32 32 H 1.09007 * 113.46249 * 267.69552 * 7 6 4 33 33 H 1.08997 * 113.46724 * 38.12538 * 7 6 4 34 34 H 0.96699 * 113.99887 * 273.58149 * 9 8 7 35 35 H 0.97002 * 120.00105 * 180.02562 * 13 12 10 36 36 H 1.08994 * 113.47172 * 321.87277 * 18 6 4 37 37 H 1.09000 * 113.46168 * 92.25241 * 18 6 4 38 38 H 1.09008 * 109.62572 * 171.86471 * 20 19 2 39 39 H 1.08990 * 109.62908 * 292.24844 * 20 19 2 40 40 H 1.09005 * 109.39002 * 170.53687 * 21 20 19 41 41 H 1.08998 * 109.38971 * 290.33710 * 21 20 19 42 42 H 1.08000 * 119.82342 * 359.74003 * 23 22 21 43 43 H 1.07999 * 120.08367 * 180.02562 * 24 23 22 44 44 H 1.07995 * 120.06276 * 180.31911 * 25 24 23 45 45 H 1.07997 * 119.80952 * 179.70788 * 26 25 24 46 46 H 1.08994 * 109.30227 * 168.78859 * 28 19 2 47 47 H 1.09001 * 109.30254 * 49.41175 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2303 5 8 2.4193 -1.8572 1.1529 6 7 2.0516 -0.0715 2.4169 7 6 1.7641 1.2907 2.8908 8 6 1.4138 0.6801 4.2577 9 8 0.0539 0.2598 4.3852 10 6 1.9031 1.4804 5.4373 11 1 2.8574 1.2500 5.8875 12 6 1.1325 2.5065 5.9415 13 7 -0.0293 2.7872 5.3929 14 14 1.7394 3.4988 7.4031 15 1 3.0265 4.1535 7.0570 16 1 0.7337 4.5351 7.7497 17 1 1.9399 2.5963 8.5652 18 6 2.3753 -0.4280 3.8065 19 7 2.0196 -0.6924 -1.1996 20 6 1.4347 -0.1123 -2.4190 21 6 1.6623 1.3994 -2.3947 22 6 3.1125 1.6969 -2.1122 23 6 3.5943 2.9667 -2.3930 24 6 4.9146 3.2826 -2.1440 25 6 5.7605 2.3293 -1.6079 26 6 5.2840 1.0631 -1.3350 27 6 3.9571 0.7439 -1.5847 28 6 3.4837 -0.6508 -1.2695 29 1 -0.3633 -1.0259 0.0601 30 1 -0.3633 0.5651 0.8583 31 1 -0.3633 0.4609 -0.9186 32 1 2.6424 1.9359 2.9158 33 1 0.9141 1.7542 2.3900 34 1 -0.5492 0.9602 4.6697 35 1 -0.5713 3.5093 5.7474 36 1 2.0460 -1.4287 4.0859 37 1 3.4149 -0.2368 4.0726 38 1 1.9180 -0.5414 -3.2968 39 1 0.3661 -0.3244 -2.4491 40 1 1.3877 1.8223 -3.3611 41 1 1.0444 1.8459 -1.6156 42 1 2.9327 3.7124 -2.8085 43 1 5.2851 4.2729 -2.3639 44 1 6.7930 2.5738 -1.4067 45 1 5.9467 0.3178 -0.9207 46 1 3.8267 -1.3322 -2.0479 47 1 3.8992 -0.9643 -0.3118 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186825532.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:38 Heat of formation + Delta-G solvation = -25.127975 kcal Electronic energy + Delta-G solvation = -29534.621070 eV Core-core repulsion = 25682.959668 eV Total energy + Delta-G solvation = -3851.661402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.01599 -40.96760 -39.33194 -37.98041 -35.89118 -34.12595 -33.72879 -33.56205 -31.26243 -30.25531 -30.00205 -27.33544 -26.85401 -25.87574 -25.15041 -23.35039 -23.13108 -21.95771 -20.60409 -19.60533 -19.13135 -18.24102 -17.50132 -17.44991 -17.03878 -16.72469 -16.42142 -16.11770 -15.84531 -15.70942 -15.40882 -15.32863 -14.75197 -14.61689 -14.38684 -14.27207 -14.04235 -13.67957 -13.52813 -13.44939 -13.40210 -13.16968 -12.87329 -12.78113 -12.72829 -12.53375 -12.49337 -12.41323 -12.23086 -12.17241 -12.00631 -11.64318 -11.33118 -10.84735 -10.60953 -10.22481 -9.72915 -9.59341 -9.52995 -9.35910 -8.27955 -6.44965 0.37006 0.41197 1.47881 1.49963 1.57019 1.60303 1.86665 2.40230 2.76808 2.84706 2.94310 3.40027 3.70227 3.73232 3.77164 3.93190 3.98806 4.06202 4.08488 4.11932 4.16074 4.25503 4.41782 4.45906 4.49266 4.57025 4.57131 4.63646 4.66424 4.71794 4.76260 4.82621 4.85737 4.91695 4.92725 4.97060 5.06161 5.11771 5.22639 5.25185 5.46329 5.56481 5.61293 5.72058 5.89272 5.91469 6.00516 6.07291 6.60205 6.86403 7.17457 7.29262 7.49251 8.78121 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013243 B = 0.003828 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.848977 B = 7312.161064 C = 8166.916489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.084 3.916 3 H 0.063 0.937 4 C 0.534 3.466 5 O -0.578 6.578 6 N -0.638 5.638 7 C 0.088 3.912 8 C 0.225 3.775 9 O -0.583 6.583 10 C -0.555 4.555 11 H 0.072 0.928 12 C 0.035 3.965 13 N -0.916 5.916 14 Si 0.969 3.031 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.274 1.274 18 C 0.106 3.894 19 N -0.517 5.517 20 C 0.051 3.949 21 C -0.118 4.118 22 C -0.091 4.091 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.128 4.128 26 C -0.130 4.130 27 C -0.129 4.129 28 C 0.094 3.906 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.390 0.610 35 H 0.277 0.723 36 H 0.052 0.948 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.140 0.860 45 H 0.121 0.879 46 H 0.099 0.901 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.694 3.940 -16.717 17.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 H 0.081 0.919 4 C 0.325 3.675 5 O -0.458 6.458 6 N -0.371 5.371 7 C -0.035 4.035 8 C 0.184 3.816 9 O -0.396 6.396 10 C -0.593 4.593 11 H 0.091 0.909 12 C -0.165 4.165 13 N -0.556 5.556 14 Si 0.793 3.207 15 H -0.193 1.193 16 H -0.206 1.206 17 H -0.200 1.200 18 C -0.016 4.016 19 N -0.239 5.239 20 C -0.076 4.076 21 C -0.156 4.156 22 C -0.091 4.091 23 C -0.142 4.142 24 C -0.143 4.143 25 C -0.146 4.146 26 C -0.149 4.149 27 C -0.131 4.131 28 C -0.034 4.034 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.121 0.879 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.245 0.755 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.121 0.879 40 H 0.126 0.874 41 H 0.097 0.903 42 H 0.160 0.840 43 H 0.163 0.837 44 H 0.157 0.843 45 H 0.139 0.861 46 H 0.117 0.883 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.792 2.257 -17.113 17.914 hybrid contribution 0.482 1.634 1.205 2.087 sum 5.274 3.891 -15.908 17.205 Atomic orbital electron populations 1.21806 0.90671 1.03012 1.03882 1.21350 0.97919 0.95556 0.87931 0.91889 1.20614 0.77354 0.86296 0.83250 1.90599 1.50348 1.19472 1.85425 1.49781 1.65904 1.14872 1.06584 1.23994 0.99652 0.83746 0.96084 1.19772 0.80762 0.89833 0.91242 1.86033 1.19525 1.43179 1.90858 1.21625 1.05967 1.16050 1.15654 0.90941 1.25732 0.94662 0.97123 0.99030 1.69310 1.12342 1.31709 1.42271 0.85440 0.78281 0.77956 0.78974 1.19320 1.20593 1.19952 1.23298 0.99878 0.99579 0.78876 1.62366 1.06174 1.53846 1.01508 1.22446 1.01918 0.91857 0.91382 1.21207 0.91781 0.98520 1.04135 1.19806 0.96279 0.93920 0.99082 1.21390 0.96415 0.95903 1.00487 1.21441 0.93810 1.00246 0.98798 1.21368 1.00964 0.93123 0.99186 1.21270 0.95144 0.97819 1.00622 1.20496 0.94869 0.97250 1.00487 1.21054 0.87716 0.92558 1.02092 0.92303 0.92426 0.87937 0.89744 0.91910 0.75453 0.91263 0.92894 0.88459 0.88985 0.87927 0.87386 0.90341 0.84025 0.83728 0.84264 0.86075 0.88337 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 8.60 71.98 0.62 -3.31 16 2 C 0.08 2.73 1.58 44.16 0.07 2.80 16 3 H 0.06 2.07 5.75 -2.39 -0.01 2.06 16 4 C 0.53 22.42 6.39 87.65 0.56 22.98 16 5 O -0.58 -27.58 16.08 -3.03 -0.05 -27.63 16 6 N -0.64 -27.64 3.69 -858.22 -3.16 -30.81 16 7 C 0.09 3.81 7.86 83.26 0.65 4.47 16 8 C 0.23 10.87 1.58 -11.12 -0.02 10.85 16 9 O -0.58 -30.32 13.55 -148.98 -2.02 -32.34 16 10 C -0.56 -27.59 8.70 25.60 0.22 -27.37 16 11 H 0.07 3.50 7.81 -2.91 -0.02 3.47 16 12 C 0.04 1.71 5.39 84.65 0.46 2.17 16 13 N -0.92 -45.48 11.01 21.45 0.24 -45.25 16 14 Si 0.97 38.84 29.54 68.60 2.03 40.87 16 15 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 16 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 17 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 18 C 0.11 4.80 8.02 83.18 0.67 5.46 16 19 N -0.52 -14.96 4.57 -880.31 -4.02 -18.98 16 20 C 0.05 1.03 5.40 86.22 0.47 1.49 16 21 C -0.12 -2.21 5.04 29.82 0.15 -2.06 16 22 C -0.09 -2.09 5.05 -19.85 -0.10 -2.19 16 23 C -0.12 -2.52 9.66 22.33 0.22 -2.30 16 24 C -0.13 -2.45 10.05 22.23 0.22 -2.23 16 25 C -0.13 -2.75 10.05 22.22 0.22 -2.53 16 26 C -0.13 -3.26 9.65 22.34 0.22 -3.04 16 27 C -0.13 -3.42 5.25 -19.86 -0.10 -3.53 16 28 C 0.09 2.74 5.23 85.58 0.45 3.19 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 1.84 7.85 -2.39 -0.02 1.82 16 31 H 0.10 2.16 5.53 -2.39 -0.01 2.15 16 32 H 0.08 3.52 8.10 -2.38 -0.02 3.50 16 33 H 0.06 2.68 7.85 -2.39 -0.02 2.66 16 34 H 0.39 20.41 6.33 -74.06 -0.47 19.95 16 35 H 0.28 13.04 8.31 -92.71 -0.77 12.27 16 36 H 0.05 2.47 8.14 -2.39 -0.02 2.46 16 37 H 0.10 4.02 8.10 -2.39 -0.02 4.00 16 38 H 0.09 1.66 8.05 -2.38 -0.02 1.64 16 39 H 0.10 1.77 6.64 -2.39 -0.02 1.75 16 40 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.08 1.56 6.06 -2.39 -0.01 1.54 16 42 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 43 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 44 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 45 H 0.12 2.87 8.06 -2.91 -0.02 2.84 16 46 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.06 2.18 6.13 -2.39 -0.01 2.17 16 Total: -1.00 -61.62 370.55 -1.50 -63.12 By element: Atomic # 1 Polarization: 45.63 SS G_CDS: 0.52 Total: 46.16 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 4.97 Total: 4.86 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -6.95 Total: -95.04 kcal Atomic # 8 Polarization: -57.90 SS G_CDS: -2.07 Total: -59.97 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -61.62 -1.50 -63.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186825532.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.997 kcal (2) G-P(sol) polarization free energy of solvation -61.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds