Wall clock time and date at job start Tue Mar 31 2020 05:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47129 * 2 1 4 4 C 1.53000 * 109.47184 * 239.99886 * 2 1 3 5 5 C 1.50701 * 109.47016 * 65.00166 * 4 2 1 6 6 O 1.21282 * 120.00381 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99884 * 180.02562 * 5 4 2 8 8 C 1.46968 * 120.59452 * 179.97438 * 7 5 4 9 9 C 1.53365 * 108.63820 * 235.20309 * 8 7 5 10 10 N 1.46966 * 108.63402 * 310.57615 * 9 8 7 11 11 C 1.34777 * 120.59464 * 235.20106 * 10 9 8 12 12 O 1.21686 * 119.99982 * 5.22418 * 11 10 9 13 13 C 1.46371 * 120.00043 * 185.21833 * 11 10 9 14 14 H 1.07992 * 120.00360 * 354.99064 * 13 11 10 15 15 C 1.40054 * 119.99966 * 174.98237 * 13 11 10 16 16 N 1.30673 * 119.99691 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 120.00179 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47393 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47198 * 300.00255 * 17 15 13 20 20 H 1.48507 * 109.47275 * 60.00111 * 17 15 13 21 21 C 1.46966 * 118.81172 * 55.47838 * 10 9 8 22 22 C 1.46966 * 120.59464 * 359.97438 * 7 5 4 23 23 C 1.50696 * 109.47185 * 119.99995 * 2 1 3 24 24 C 1.38236 * 119.99874 * 59.72715 * 23 2 1 25 25 C 1.38240 * 119.99905 * 179.79251 * 24 23 2 26 26 C 1.38233 * 120.00047 * 0.43541 * 25 24 23 27 27 C 1.38243 * 119.99900 * 359.81463 * 26 25 24 28 28 C 1.38229 * 119.99664 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47129 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.46906 * 299.99941 * 1 2 3 31 31 H 1.09005 * 109.47080 * 60.00314 * 1 2 3 32 32 H 1.08997 * 109.47605 * 305.00409 * 4 2 1 33 33 H 1.08997 * 109.47592 * 184.99995 * 4 2 1 34 34 H 1.09002 * 109.60813 * 115.45439 * 8 7 5 35 35 H 1.08999 * 109.60718 * 354.94867 * 8 7 5 36 36 H 1.08998 * 109.61339 * 190.82833 * 9 8 7 37 37 H 1.08995 * 109.75272 * 70.39927 * 9 8 7 38 38 H 0.97000 * 119.99587 * 180.02562 * 16 15 13 39 39 H 1.08993 * 109.61294 * 64.26706 * 21 10 9 40 40 H 1.09002 * 109.60786 * 184.78204 * 21 10 9 41 41 H 1.09007 * 109.60611 * 244.54055 * 22 7 5 42 42 H 1.08995 * 109.60794 * 4.88011 * 22 7 5 43 43 H 1.08004 * 120.00146 * 359.97438 * 24 23 2 44 44 H 1.08001 * 120.00072 * 180.27656 * 25 24 23 45 45 H 1.08004 * 120.00243 * 179.83947 * 26 25 24 46 46 H 1.07997 * 119.99816 * 179.97438 * 27 26 25 47 47 H 1.08008 * 119.99758 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0110 1.0870 -2.3634 7 7 1.9845 -0.3919 -3.7001 8 6 1.6021 0.3563 -4.9059 9 6 0.8278 -0.5818 -5.8399 10 7 1.5915 -1.8281 -5.9923 11 6 1.9346 -2.2771 -7.2159 12 8 1.6959 -1.6029 -8.2004 13 6 2.5945 -3.5756 -7.3605 14 1 2.8794 -4.1373 -6.4832 15 6 2.8563 -4.0898 -8.6367 16 7 2.5119 -3.4101 -9.6982 17 14 3.6978 -5.7473 -8.8213 18 1 3.8582 -6.0631 -10.2633 19 1 5.0328 -5.6995 -8.1729 20 1 2.8705 -6.7973 -8.1743 21 6 1.9690 -2.5794 -4.7869 22 6 2.7478 -1.6386 -3.8526 23 6 2.0324 -0.7104 1.2304 24 6 1.6938 -2.0322 1.4520 25 6 2.1581 -2.6851 2.5785 26 6 2.9536 -2.0136 3.4880 27 6 3.2880 -0.6902 3.2690 28 6 2.8272 -0.0387 2.1403 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6054 -1.7198 -1.2952 33 1 3.1263 -0.7995 -1.2056 34 1 2.4976 0.7183 -5.4111 35 1 0.9698 1.1995 -4.6279 36 1 0.7031 -0.1077 -6.8135 37 1 -0.1504 -0.8022 -5.4125 38 1 2.6928 -3.7664 -10.5820 39 1 1.0714 -2.9383 -4.2834 40 1 2.5984 -3.4248 -5.0649 41 1 3.7250 -1.4189 -4.2827 42 1 2.8747 -2.1112 -2.8786 43 1 1.0689 -2.5557 0.7435 44 1 1.8972 -3.7191 2.7494 45 1 3.3143 -2.5230 4.3695 46 1 3.9091 -0.1655 3.9798 47 1 3.0881 0.9954 1.9694 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252489238.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:04 Heat of formation + Delta-G solvation = -44.041523 kcal Electronic energy + Delta-G solvation = -28056.161447 eV Core-core repulsion = 24203.679892 eV Total energy + Delta-G solvation = -3852.481555 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.36078 -39.42711 -38.02250 -35.97542 -35.09276 -33.10558 -32.51372 -31.28494 -31.12408 -29.89486 -28.21658 -27.15760 -25.84037 -23.89721 -23.16542 -22.76021 -22.03538 -20.54244 -19.57776 -18.42835 -17.55206 -16.80752 -16.20831 -16.00911 -15.62409 -15.46835 -15.22733 -15.03466 -14.55561 -14.27178 -14.11824 -14.02852 -13.74689 -13.66272 -13.52016 -12.97268 -12.88768 -12.61260 -12.50783 -12.05395 -11.93437 -11.63402 -11.53100 -11.41998 -11.30715 -11.18626 -11.06193 -10.99443 -10.93108 -10.77345 -10.75067 -10.30827 -10.13530 -9.55397 -9.14035 -8.95094 -8.91087 -8.63594 -7.69154 -7.28715 -6.28205 -4.74509 1.13280 1.18031 2.73264 3.09443 3.09962 3.15463 3.16600 3.57289 4.00991 4.35617 4.43702 4.48144 4.53707 4.76062 4.79685 4.86193 4.92148 4.95512 5.19687 5.28689 5.28859 5.31372 5.35164 5.48520 5.53053 5.55324 5.60776 5.61337 5.77698 5.80987 5.87538 5.92757 5.96033 6.02132 6.05350 6.21418 6.24916 6.28984 6.32614 6.34884 6.47623 6.49781 6.72529 6.78776 7.35985 7.46123 7.57110 8.00894 8.22571 8.29769 8.92943 9.31203 10.47810 10.66225 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016569 B = 0.002619 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.474771 B =10687.320384 C =11978.874929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.035 4.035 3 H 0.085 0.915 4 C -0.132 4.132 5 C 0.514 3.486 6 O -0.548 6.548 7 N -0.605 5.605 8 C 0.099 3.901 9 C 0.108 3.892 10 N -0.643 5.643 11 C 0.559 3.441 12 O -0.575 6.575 13 C -0.545 4.545 14 H 0.073 0.927 15 C 0.088 3.912 16 N -0.766 5.766 17 Si 0.907 3.093 18 H -0.280 1.280 19 H -0.267 1.267 20 H -0.267 1.267 21 C 0.109 3.891 22 C 0.088 3.912 23 C -0.073 4.073 24 C -0.114 4.114 25 C -0.119 4.119 26 C -0.128 4.128 27 C -0.120 4.120 28 C -0.117 4.117 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.046 0.954 38 H 0.270 0.730 39 H 0.047 0.953 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.318 1.434 23.423 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.054 4.054 3 H 0.104 0.896 4 C -0.172 4.172 5 C 0.302 3.698 6 O -0.427 6.427 7 N -0.338 5.338 8 C -0.024 4.024 9 C -0.017 4.017 10 N -0.382 5.382 11 C 0.365 3.635 12 O -0.458 6.458 13 C -0.582 4.582 14 H 0.091 0.909 15 C -0.133 4.133 16 N -0.395 5.395 17 Si 0.732 3.268 18 H -0.205 1.205 19 H -0.192 1.192 20 H -0.192 1.192 21 C -0.016 4.016 22 C -0.036 4.036 23 C -0.073 4.073 24 C -0.132 4.132 25 C -0.137 4.137 26 C -0.146 4.146 27 C -0.138 4.138 28 C -0.135 4.135 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.124 0.876 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.844 2.365 22.673 22.812 hybrid contribution 0.555 -1.024 0.027 1.165 sum 1.399 1.342 22.700 22.783 Atomic orbital electron populations 1.21958 0.93625 1.01749 1.03214 1.19890 0.96806 0.99057 0.89639 0.89647 1.21769 1.02923 1.00266 0.92250 1.20587 0.79180 0.85586 0.84408 1.90630 1.40751 1.25043 1.86239 1.48129 1.54903 1.24844 1.05915 1.22071 1.00288 0.95199 0.84857 1.21501 0.93382 0.87057 0.99786 1.48189 1.59762 1.23790 1.06453 1.18282 0.78629 0.86816 0.79756 1.90600 1.59406 1.59168 1.36594 1.20905 1.41376 1.03068 0.92822 0.90931 1.25733 0.93944 0.98103 0.95484 1.69996 1.35150 1.35832 0.98483 0.86436 0.80220 0.82332 0.77824 1.20527 1.19190 1.19225 1.21874 0.98470 0.94829 0.86451 1.22402 0.95636 0.84887 1.00649 1.19940 0.97047 0.94237 0.96114 1.21052 1.00048 0.94373 0.97734 1.21159 0.98002 0.99880 0.94625 1.21142 0.98998 0.94928 0.99500 1.21138 1.00073 0.94990 0.97574 1.21107 0.97975 0.99955 0.94440 0.93116 0.92905 0.90102 0.88730 0.88883 0.91392 0.88981 0.88639 0.93559 0.91912 0.93451 0.87634 0.90779 0.89711 0.85997 0.86132 0.86332 0.86234 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.74 37.16 0.32 -1.27 16 2 C -0.04 -0.36 2.21 -91.77 -0.20 -0.56 16 3 H 0.09 0.95 7.69 -51.93 -0.40 0.55 16 4 C -0.13 -1.37 3.26 -27.88 -0.09 -1.46 16 5 C 0.51 7.20 7.41 -10.98 -0.08 7.12 16 6 O -0.55 -9.13 13.37 5.56 0.07 -9.05 16 7 N -0.60 -8.96 2.95 -172.24 -0.51 -9.46 16 8 C 0.10 1.64 6.59 -3.60 -0.02 1.62 16 9 C 0.11 2.07 6.60 -3.60 -0.02 2.05 16 10 N -0.64 -13.88 2.94 -173.91 -0.51 -14.40 16 11 C 0.56 15.24 7.62 -12.99 -0.10 15.14 16 12 O -0.58 -18.07 14.45 5.20 0.08 -17.99 16 13 C -0.55 -14.49 8.87 -35.63 -0.32 -14.80 16 14 H 0.07 1.71 5.66 -52.49 -0.30 1.41 16 15 C 0.09 2.34 5.50 -17.36 -0.10 2.25 16 16 N -0.77 -22.28 11.84 55.55 0.66 -21.62 16 17 Si 0.91 19.20 29.56 -169.99 -5.02 14.17 16 18 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 C 0.11 1.83 6.51 -3.39 -0.02 1.80 16 22 C 0.09 1.19 6.52 -3.39 -0.02 1.17 16 23 C -0.07 -0.69 4.78 -104.63 -0.50 -1.19 16 24 C -0.11 -1.01 8.76 -39.58 -0.35 -1.36 16 25 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 26 C -0.13 -1.01 10.05 -39.58 -0.40 -1.41 16 27 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 28 C -0.12 -1.05 9.67 -39.59 -0.38 -1.43 16 29 H 0.05 0.49 7.37 -51.93 -0.38 0.11 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 1.05 5.95 -51.93 -0.31 0.74 16 32 H 0.09 0.86 7.17 -51.93 -0.37 0.49 16 33 H 0.09 0.86 7.91 -51.93 -0.41 0.45 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.49 6.99 -51.93 -0.36 1.12 16 36 H 0.10 2.04 6.99 -51.93 -0.36 1.68 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.27 7.15 8.29 -40.82 -0.34 6.82 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.11 1.80 5.34 -51.93 -0.28 1.53 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.08 0.85 5.91 -51.93 -0.31 0.54 16 43 H 0.12 0.96 7.16 -52.48 -0.38 0.58 16 44 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 46 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 47 H 0.12 0.95 7.95 -52.48 -0.42 0.53 16 LS Contribution 374.88 15.07 5.65 5.65 Total: -1.00 -34.23 374.88 -9.45 -43.68 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.79 Total: 4.10 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -3.08 Total: 4.93 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -0.36 Total: -45.48 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: 0.15 Total: -27.05 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.23 -9.45 -43.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252489238.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.361 kcal (2) G-P(sol) polarization free energy of solvation -34.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds