Wall clock time and date at job start Tue Mar 31 2020 05:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47129 * 2 1 4 4 C 1.53000 * 109.47184 * 239.99886 * 2 1 3 5 5 C 1.50701 * 109.47016 * 65.00166 * 4 2 1 6 6 O 1.21282 * 120.00381 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99884 * 180.02562 * 5 4 2 8 8 C 1.46968 * 120.59452 * 179.97438 * 7 5 4 9 9 C 1.53365 * 108.63820 * 235.20309 * 8 7 5 10 10 N 1.46966 * 108.63402 * 310.57615 * 9 8 7 11 11 C 1.34777 * 120.59464 * 235.20106 * 10 9 8 12 12 O 1.21686 * 119.99982 * 5.22418 * 11 10 9 13 13 C 1.46371 * 120.00043 * 185.21833 * 11 10 9 14 14 H 1.07992 * 120.00360 * 354.99064 * 13 11 10 15 15 C 1.40054 * 119.99966 * 174.98237 * 13 11 10 16 16 N 1.30673 * 119.99691 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 120.00179 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47393 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47198 * 300.00255 * 17 15 13 20 20 H 1.48507 * 109.47275 * 60.00111 * 17 15 13 21 21 C 1.46966 * 118.81172 * 55.47838 * 10 9 8 22 22 C 1.46966 * 120.59464 * 359.97438 * 7 5 4 23 23 C 1.50696 * 109.47185 * 119.99995 * 2 1 3 24 24 C 1.38236 * 119.99874 * 59.72715 * 23 2 1 25 25 C 1.38240 * 119.99905 * 179.79251 * 24 23 2 26 26 C 1.38233 * 120.00047 * 0.43541 * 25 24 23 27 27 C 1.38243 * 119.99900 * 359.81463 * 26 25 24 28 28 C 1.38229 * 119.99664 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47129 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.46906 * 299.99941 * 1 2 3 31 31 H 1.09005 * 109.47080 * 60.00314 * 1 2 3 32 32 H 1.08997 * 109.47605 * 305.00409 * 4 2 1 33 33 H 1.08997 * 109.47592 * 184.99995 * 4 2 1 34 34 H 1.09002 * 109.60813 * 115.45439 * 8 7 5 35 35 H 1.08999 * 109.60718 * 354.94867 * 8 7 5 36 36 H 1.08998 * 109.61339 * 190.82833 * 9 8 7 37 37 H 1.08995 * 109.75272 * 70.39927 * 9 8 7 38 38 H 0.97000 * 119.99587 * 180.02562 * 16 15 13 39 39 H 1.08993 * 109.61294 * 64.26706 * 21 10 9 40 40 H 1.09002 * 109.60786 * 184.78204 * 21 10 9 41 41 H 1.09007 * 109.60611 * 244.54055 * 22 7 5 42 42 H 1.08995 * 109.60794 * 4.88011 * 22 7 5 43 43 H 1.08004 * 120.00146 * 359.97438 * 24 23 2 44 44 H 1.08001 * 120.00072 * 180.27656 * 25 24 23 45 45 H 1.08004 * 120.00243 * 179.83947 * 26 25 24 46 46 H 1.07997 * 119.99816 * 179.97438 * 27 26 25 47 47 H 1.08008 * 119.99758 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0110 1.0870 -2.3634 7 7 1.9845 -0.3919 -3.7001 8 6 1.6021 0.3563 -4.9059 9 6 0.8278 -0.5818 -5.8399 10 7 1.5915 -1.8281 -5.9923 11 6 1.9346 -2.2771 -7.2159 12 8 1.6959 -1.6029 -8.2004 13 6 2.5945 -3.5756 -7.3605 14 1 2.8794 -4.1373 -6.4832 15 6 2.8563 -4.0898 -8.6367 16 7 2.5119 -3.4101 -9.6982 17 14 3.6978 -5.7473 -8.8213 18 1 3.8582 -6.0631 -10.2633 19 1 5.0328 -5.6995 -8.1729 20 1 2.8705 -6.7973 -8.1743 21 6 1.9690 -2.5794 -4.7869 22 6 2.7478 -1.6386 -3.8526 23 6 2.0324 -0.7104 1.2304 24 6 1.6938 -2.0322 1.4520 25 6 2.1581 -2.6851 2.5785 26 6 2.9536 -2.0136 3.4880 27 6 3.2880 -0.6902 3.2690 28 6 2.8272 -0.0387 2.1403 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6054 -1.7198 -1.2952 33 1 3.1263 -0.7995 -1.2056 34 1 2.4976 0.7183 -5.4111 35 1 0.9698 1.1995 -4.6279 36 1 0.7031 -0.1077 -6.8135 37 1 -0.1504 -0.8022 -5.4125 38 1 2.6928 -3.7664 -10.5820 39 1 1.0714 -2.9383 -4.2834 40 1 2.5984 -3.4248 -5.0649 41 1 3.7250 -1.4189 -4.2827 42 1 2.8747 -2.1112 -2.8786 43 1 1.0689 -2.5557 0.7435 44 1 1.8972 -3.7191 2.7494 45 1 3.3143 -2.5230 4.3695 46 1 3.9091 -0.1655 3.9798 47 1 3.0881 0.9954 1.9694 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252489238.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:04 Heat of formation + Delta-G solvation = -64.460034 kcal Electronic energy + Delta-G solvation = -28057.046860 eV Core-core repulsion = 24203.679892 eV Total energy + Delta-G solvation = -3853.366968 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.45885 -40.27932 -39.58109 -37.57906 -35.94617 -34.82600 -34.43538 -32.63632 -31.71948 -30.65448 -29.35445 -28.76520 -27.41746 -24.91167 -24.33958 -23.56882 -23.25214 -21.72723 -20.80069 -19.79466 -18.73060 -18.03371 -17.66229 -17.18232 -17.05774 -16.60198 -16.22794 -16.07300 -15.95864 -15.71674 -15.63610 -14.94007 -14.82854 -14.53942 -14.49416 -14.17074 -13.96246 -13.73026 -13.60424 -13.42283 -13.23175 -13.11388 -12.89910 -12.70142 -12.63826 -12.35963 -12.28041 -12.17656 -12.09513 -12.00966 -11.93068 -11.69033 -11.49969 -10.90200 -10.69642 -10.03164 -9.78821 -9.73746 -9.54340 -8.99117 -8.27874 -6.82958 0.51556 0.58302 1.43358 1.46214 1.57892 1.62932 1.92172 2.26201 2.47430 2.82837 2.95733 3.44751 3.60213 3.79280 3.91244 3.96961 4.04051 4.13547 4.20937 4.23202 4.25963 4.35300 4.38846 4.46447 4.49287 4.59744 4.68378 4.68662 4.70468 4.72773 4.77751 4.85781 4.88166 5.05274 5.08901 5.19648 5.22137 5.28322 5.35890 5.40519 5.47914 5.67309 5.71487 5.72835 5.81783 6.12825 6.20158 6.31738 6.45816 6.89218 7.16557 7.40766 8.46429 8.68027 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016569 B = 0.002619 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.474771 B =10687.320384 C =11978.874929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.029 4.029 3 H 0.071 0.929 4 C -0.125 4.125 5 C 0.513 3.487 6 O -0.577 6.577 7 N -0.609 5.609 8 C 0.112 3.888 9 C 0.111 3.889 10 N -0.646 5.646 11 C 0.540 3.460 12 O -0.633 6.633 13 C -0.565 4.565 14 H 0.102 0.898 15 C 0.027 3.973 16 N -0.825 5.825 17 Si 0.996 3.004 18 H -0.281 1.281 19 H -0.250 1.250 20 H -0.252 1.252 21 C 0.103 3.897 22 C 0.097 3.903 23 C -0.082 4.082 24 C -0.122 4.122 25 C -0.125 4.125 26 C -0.133 4.133 27 C -0.127 4.127 28 C -0.131 4.131 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.273 0.727 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.069 0.931 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.661 -1.155 26.691 26.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.048 4.048 3 H 0.089 0.911 4 C -0.164 4.164 5 C 0.304 3.696 6 O -0.457 6.457 7 N -0.341 5.341 8 C -0.012 4.012 9 C -0.014 4.014 10 N -0.383 5.383 11 C 0.347 3.653 12 O -0.521 6.521 13 C -0.601 4.601 14 H 0.120 0.880 15 C -0.188 4.188 16 N -0.454 5.454 17 Si 0.815 3.185 18 H -0.206 1.206 19 H -0.174 1.174 20 H -0.175 1.175 21 C -0.021 4.021 22 C -0.026 4.026 23 C -0.082 4.082 24 C -0.139 4.139 25 C -0.143 4.143 26 C -0.151 4.151 27 C -0.145 4.145 28 C -0.149 4.149 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.122 0.878 41 H 0.088 0.912 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.156 0.844 45 H 0.156 0.844 46 H 0.154 0.846 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.188 -0.225 26.035 26.128 hybrid contribution 0.069 -0.141 -0.879 0.893 sum 2.257 -0.366 25.156 25.260 Atomic orbital electron populations 1.21895 0.94218 1.02090 1.01963 1.19769 0.96235 0.98508 0.90250 0.91090 1.21816 1.04199 1.00456 0.89916 1.21269 0.78133 0.85346 0.84851 1.90632 1.41922 1.26558 1.86592 1.48191 1.55239 1.25189 1.05514 1.21737 0.99458 0.94725 0.85280 1.21489 0.94151 0.86755 0.99002 1.48051 1.59083 1.24517 1.06645 1.18741 0.78642 0.87214 0.80694 1.90551 1.61639 1.60673 1.39206 1.21474 1.41226 1.03134 0.94268 0.88050 1.27028 0.94140 1.02818 0.94772 1.70197 1.37187 1.38677 0.99373 0.85090 0.79431 0.76142 0.77806 1.20637 1.17417 1.17545 1.22147 0.99720 0.95149 0.85057 1.22433 0.94321 0.83722 1.02159 1.19850 0.97843 0.94647 0.95905 1.21216 1.00235 0.94148 0.98349 1.21443 0.97727 1.00822 0.94344 1.21461 0.98577 0.94935 1.00090 1.21397 1.00125 0.95381 0.97585 1.21279 0.98288 1.00383 0.94901 0.91936 0.92788 0.92658 0.86507 0.86946 0.92406 0.88674 0.91814 0.92596 0.91717 0.91603 0.87770 0.91246 0.84986 0.85002 0.84373 0.84434 0.84623 0.85778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.74 71.98 0.63 -2.28 16 2 C -0.03 -0.53 2.21 -11.54 -0.03 -0.56 16 3 H 0.07 1.52 7.69 -2.39 -0.02 1.50 16 4 C -0.12 -2.18 3.26 29.85 0.10 -2.08 16 5 C 0.51 13.42 7.41 87.66 0.65 14.07 16 6 O -0.58 -18.88 13.37 -3.04 -0.04 -18.92 16 7 N -0.61 -17.00 2.95 -817.22 -2.41 -19.41 16 8 C 0.11 3.76 6.59 86.41 0.57 4.33 16 9 C 0.11 4.40 6.60 86.41 0.57 4.97 16 10 N -0.65 -28.15 2.94 -822.34 -2.42 -30.57 16 11 C 0.54 30.38 7.62 86.36 0.66 31.04 16 12 O -0.63 -42.02 14.45 -4.30 -0.06 -42.09 16 13 C -0.56 -30.07 8.87 24.83 0.22 -29.85 16 14 H 0.10 4.61 5.66 -2.91 -0.02 4.59 16 15 C 0.03 1.47 5.50 85.31 0.47 1.94 16 16 N -0.82 -49.62 11.84 21.84 0.26 -49.37 16 17 Si 1.00 38.83 29.56 68.60 2.03 40.86 16 18 H -0.28 -10.88 7.11 99.48 0.71 -10.18 16 19 H -0.25 -9.02 7.11 99.48 0.71 -8.32 16 20 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 21 C 0.10 3.23 6.51 86.55 0.56 3.79 16 22 C 0.10 2.33 6.52 86.55 0.56 2.90 16 23 C -0.08 -1.36 4.78 -19.87 -0.09 -1.46 16 24 C -0.12 -1.78 8.76 22.27 0.20 -1.58 16 25 C -0.13 -1.65 10.05 22.27 0.22 -1.42 16 26 C -0.13 -1.70 10.05 22.27 0.22 -1.47 16 27 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 28 C -0.13 -2.09 9.67 22.27 0.22 -1.87 16 29 H 0.06 1.08 7.37 -2.39 -0.02 1.06 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 1.41 5.95 -2.38 -0.01 1.40 16 32 H 0.12 1.59 7.17 -2.39 -0.02 1.57 16 33 H 0.11 1.61 7.91 -2.39 -0.02 1.59 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.10 3.13 6.99 -2.39 -0.02 3.11 16 36 H 0.06 2.93 6.99 -2.39 -0.02 2.91 16 37 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.27 14.99 8.29 -92.71 -0.77 14.22 16 39 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.10 3.30 5.34 -2.39 -0.01 3.29 16 41 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 42 H 0.13 1.97 5.91 -2.39 -0.01 1.96 16 43 H 0.13 1.59 7.16 -2.91 -0.02 1.57 16 44 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 45 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 46 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 47 H 0.12 1.79 7.95 -2.91 -0.02 1.77 16 Total: -1.00 -78.79 374.88 4.29 -74.50 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.98 Total: 26.05 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 5.95 Total: 18.94 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -4.57 Total: -99.35 kcal Atomic # 8 Polarization: -60.91 SS G_CDS: -0.10 Total: -61.01 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -78.79 4.29 -74.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252489238.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.044 kcal (2) G-P(sol) polarization free energy of solvation -78.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds