Wall clock time and date at job start Tue Mar 31 2020 05:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50700 * 119.99865 * 2 1 4 4 N 1.46490 * 109.47314 * 125.00184 * 3 2 1 5 5 C 1.46497 * 120.00322 * 270.00006 * 4 3 2 6 6 C 1.50707 * 109.47162 * 269.99844 * 5 4 3 7 7 H 1.07998 * 119.99576 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00057 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99930 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99982 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47235 * 59.99855 * 10 8 6 12 12 H 1.48500 * 109.47168 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47142 * 299.99797 * 10 8 6 14 14 C 1.34780 * 120.00111 * 89.99439 * 4 3 2 15 15 O 1.21280 * 120.00423 * 179.97438 * 14 4 3 16 16 C 1.50701 * 119.99795 * 0.02562 * 14 4 3 17 17 N 1.46901 * 109.46921 * 179.97438 * 16 14 4 18 18 C 1.46893 * 111.00243 * 293.95400 * 17 16 14 19 19 C 1.38563 * 110.99901 * 169.99726 * 17 16 14 20 20 N 1.33057 * 120.73977 * 359.72008 * 19 17 16 21 21 C 1.32065 * 121.09742 * 179.81928 * 20 19 17 22 22 N 1.31462 * 122.53120 * 0.44163 * 21 20 19 23 23 C 1.33677 * 120.57286 * 359.79416 * 22 21 20 24 24 N 1.34628 * 134.51010 * 179.97438 * 23 22 21 25 25 C 1.30401 * 109.78842 * 180.02562 * 24 23 22 26 26 N 1.35207 * 110.10602 * 359.97438 * 25 24 23 27 27 H 0.97001 * 126.41393 * 179.97438 * 26 25 24 28 28 C 1.37900 * 107.17036 * 0.02562 * 26 25 24 29 29 H 1.07993 * 120.00154 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99624 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.00094 * 179.97438 * 2 1 3 32 32 H 1.09006 * 109.47431 * 4.99991 * 3 2 1 33 33 H 1.09002 * 109.47019 * 245.00223 * 3 2 1 34 34 H 1.09000 * 109.47018 * 29.99405 * 5 4 3 35 35 H 1.09000 * 109.47828 * 149.99700 * 5 4 3 36 36 H 0.97001 * 119.99961 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.47060 * 299.99722 * 16 14 4 38 38 H 1.09001 * 109.47380 * 59.99809 * 16 14 4 39 39 H 1.08999 * 109.47439 * 60.00146 * 18 17 16 40 40 H 1.08997 * 109.47257 * 180.02562 * 18 17 16 41 41 H 1.09006 * 109.46808 * 299.99830 * 18 17 16 42 42 H 1.08002 * 118.73342 * 180.25886 * 21 20 19 43 43 H 1.07995 * 124.94817 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1313 5 6 2.5590 1.8650 2.4248 6 6 2.8444 3.3437 2.4803 7 1 3.3041 3.8369 1.6367 8 6 2.5186 4.0668 3.6081 9 7 1.9584 3.4661 4.6353 10 14 2.8717 5.8998 3.6767 11 1 2.1358 6.5869 2.5850 12 1 2.4300 6.4403 4.9874 13 1 4.3295 6.1296 3.5119 14 6 4.2497 0.8662 0.9823 15 8 5.0201 0.8888 1.9187 16 6 4.6972 0.3183 -0.3484 17 7 6.0956 -0.1212 -0.2517 18 6 6.9917 1.0204 -0.0246 19 6 6.4721 -0.8312 -1.3804 20 7 5.6085 -1.0430 -2.3702 21 6 5.9608 -1.7157 -3.4507 22 7 7.1654 -2.2176 -3.6095 23 6 8.0982 -2.0586 -2.6652 24 7 9.3826 -2.4399 -2.5337 25 6 9.8534 -2.0191 -1.3927 26 7 8.8989 -1.3390 -0.7185 27 1 8.9942 -0.9252 0.1537 28 6 7.7643 -1.3449 -1.5023 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5399 0.9354 0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 1.4889 1.6967 2.5459 35 1 3.0991 1.3604 3.2259 36 1 1.7288 3.9749 5.4286 37 1 4.0680 -0.5285 -0.6228 38 1 4.6125 1.0952 -1.1083 39 1 6.7170 1.5188 0.9050 40 1 8.0206 0.6670 0.0425 41 1 6.9025 1.7227 -0.8535 42 1 5.2303 -1.8615 -4.2327 43 1 10.8594 -2.1883 -1.0384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293935329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:13 Heat of formation + Delta-G solvation = 96.619586 kcal Electronic energy + Delta-G solvation = -28071.815295 eV Core-core repulsion = 24154.185671 eV Total energy + Delta-G solvation = -3917.629624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.77483 -41.28099 -40.29347 -38.48243 -37.13813 -35.12231 -34.27877 -33.66926 -33.03076 -31.52574 -30.38230 -28.79118 -27.17764 -26.83529 -25.02045 -24.83882 -23.86251 -22.35396 -21.17551 -20.31553 -19.63921 -19.09077 -18.64396 -18.42513 -17.63868 -17.31412 -17.15800 -16.69128 -16.41536 -16.04692 -15.81415 -15.66573 -15.42147 -15.17857 -14.89286 -14.46630 -14.34544 -14.24195 -13.93700 -13.34859 -13.21851 -13.02351 -12.96470 -12.75850 -12.71732 -12.57994 -12.51968 -12.22249 -12.15558 -11.68248 -11.60792 -11.01793 -10.63393 -10.49797 -10.34972 -10.29987 -10.22455 -9.47723 -9.37206 -8.21278 -6.36028 -0.41685 0.06664 1.32381 1.38270 1.41071 1.48695 1.59080 1.69638 1.75195 1.96277 2.37209 2.56247 2.66759 2.82687 3.07923 3.08968 3.41759 3.49489 3.66893 3.98738 4.04155 4.07544 4.14170 4.22323 4.25755 4.35174 4.45566 4.49552 4.70836 4.78800 4.85341 5.00315 5.06665 5.11612 5.19009 5.24833 5.51965 5.69960 5.73560 5.77051 5.94854 5.96874 6.06645 6.18179 6.56489 6.67972 6.75546 7.15843 7.27507 7.43264 8.85748 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015283 B = 0.003187 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.636236 B = 8784.394780 C =10068.116050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.183 4.183 3 C 0.132 3.868 4 N -0.595 5.595 5 C 0.267 3.733 6 C -0.541 4.541 7 H 0.056 0.944 8 C 0.009 3.991 9 N -0.928 5.928 10 Si 0.965 3.035 11 H -0.262 1.262 12 H -0.281 1.281 13 H -0.275 1.275 14 C 0.501 3.499 15 O -0.573 6.573 16 C 0.064 3.936 17 N -0.468 5.468 18 C 0.026 3.974 19 C 0.394 3.606 20 N -0.563 5.563 21 C 0.327 3.673 22 N -0.535 5.535 23 C 0.285 3.715 24 N -0.537 5.537 25 C 0.328 3.672 26 N -0.563 5.563 27 H 0.443 0.557 28 C -0.093 4.093 29 H 0.115 0.885 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.020 0.980 35 H -0.002 1.002 36 H 0.266 0.734 37 H 0.127 0.873 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.238 0.762 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.958 -8.270 -14.416 19.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.203 4.203 3 C 0.010 3.990 4 N -0.325 5.325 5 C 0.146 3.854 6 C -0.580 4.580 7 H 0.074 0.926 8 C -0.190 4.190 9 N -0.568 5.568 10 Si 0.790 3.210 11 H -0.186 1.186 12 H -0.207 1.207 13 H -0.201 1.201 14 C 0.288 3.712 15 O -0.453 6.453 16 C -0.065 4.065 17 N -0.184 5.184 18 C -0.119 4.119 19 C 0.144 3.856 20 N -0.286 5.286 21 C 0.034 3.966 22 N -0.254 5.254 23 C 0.035 3.965 24 N -0.261 5.261 25 C 0.038 3.962 26 N -0.175 5.175 27 H 0.288 0.712 28 C -0.211 4.211 29 H 0.133 0.867 30 H 0.118 0.882 31 H 0.129 0.871 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.038 0.962 35 H 0.016 0.984 36 H 0.075 0.925 37 H 0.144 0.856 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.254 0.746 43 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges 10.116 -9.123 -14.661 20.013 hybrid contribution -0.048 1.906 1.724 2.571 sum 10.068 -7.217 -12.937 17.912 Atomic orbital electron populations 1.24038 0.95518 1.02857 0.98242 1.23296 0.96815 0.98211 1.01935 1.20846 0.92834 0.96369 0.88913 1.48159 1.11487 1.59633 1.13269 1.18687 0.93841 0.92709 0.80158 1.21666 1.40632 0.94299 1.01375 0.92551 1.25828 0.94682 1.03571 0.94895 1.70052 1.42744 1.38173 1.05835 0.85501 0.78598 0.79176 0.77746 1.18620 1.20661 1.20052 1.20848 0.81983 0.77887 0.90447 1.90609 1.53453 1.57678 1.43519 1.21898 0.88101 1.02680 0.93830 1.58431 1.05137 1.25163 1.29704 1.22697 0.95891 0.89906 1.03431 1.19348 0.86356 0.92307 0.87546 1.68594 1.35259 1.22575 1.02165 1.25322 0.90681 0.87165 0.93421 1.67691 1.02144 1.24659 1.30950 1.19812 0.92679 0.94757 0.89239 1.70090 1.07127 1.28171 1.20667 1.26748 0.97041 0.86911 0.85461 1.43114 1.08582 1.45964 1.19887 0.71235 1.19931 0.91401 1.11161 0.98611 0.86719 0.88167 0.87145 0.90160 0.87750 0.96215 0.98364 0.92465 0.85555 0.88565 0.89387 0.89338 0.93123 0.74594 0.69909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 14.32 67.77 0.97 -3.04 16 2 C -0.18 -4.89 9.74 25.64 0.25 -4.64 16 3 C 0.13 4.03 5.65 85.63 0.48 4.51 16 4 N -0.59 -24.24 2.44 -830.51 -2.03 -26.27 16 5 C 0.27 14.00 5.16 85.64 0.44 14.45 16 6 C -0.54 -30.07 9.39 25.60 0.24 -29.83 16 7 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 8 C 0.01 0.52 5.46 84.65 0.46 0.99 16 9 N -0.93 -55.13 13.29 21.45 0.28 -54.85 16 10 Si 0.97 43.51 29.54 68.60 2.03 45.53 16 11 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 12 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 13 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 14 C 0.50 19.71 7.40 87.66 0.65 20.36 16 15 O -0.57 -27.33 13.89 -3.03 -0.04 -27.37 16 16 C 0.06 1.85 3.29 85.56 0.28 2.13 16 17 N -0.47 -12.91 4.53 -730.48 -3.31 -16.22 16 18 C 0.03 0.66 8.98 127.69 1.15 1.80 16 19 C 0.39 10.12 6.41 133.13 0.85 10.97 16 20 N -0.56 -13.70 8.78 -197.59 -1.73 -15.43 16 21 C 0.33 7.23 12.24 180.90 2.21 9.45 16 22 N -0.53 -14.53 10.50 -199.42 -2.09 -16.63 16 23 C 0.28 7.64 8.42 134.44 1.13 8.77 16 24 N -0.54 -12.32 11.23 -197.86 -2.22 -14.54 16 25 C 0.33 3.93 12.95 180.24 2.33 6.27 16 26 N -0.56 -8.29 5.61 -191.12 -1.07 -9.37 16 27 H 0.44 4.41 7.52 -92.71 -0.70 3.72 16 28 C -0.09 -2.18 6.61 39.06 0.26 -1.92 16 29 H 0.11 2.26 8.06 -2.91 -0.02 2.24 16 30 H 0.10 2.35 7.84 -2.91 -0.02 2.33 16 31 H 0.11 2.82 7.83 -2.91 -0.02 2.79 16 32 H 0.08 2.57 7.72 -2.38 -0.02 2.55 16 33 H 0.10 2.52 6.44 -2.39 -0.02 2.51 16 34 H 0.02 1.07 8.07 -2.39 -0.02 1.05 16 35 H 0.00 -0.11 7.42 -2.39 -0.02 -0.12 16 36 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 37 H 0.13 3.39 7.18 -2.39 -0.02 3.37 16 38 H 0.10 2.46 7.38 -2.39 -0.02 2.44 16 39 H 0.09 2.80 5.88 -2.39 -0.01 2.79 16 40 H 0.09 1.63 5.44 -2.39 -0.01 1.61 16 41 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.24 3.18 8.06 -2.91 -0.02 3.15 16 43 H 0.29 -0.38 8.06 -2.91 -0.02 -0.40 16 Total: -1.00 -82.01 364.28 1.89 -80.12 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.36 Total: 14.74 kcal Atomic # 6 Polarization: 28.56 SS G_CDS: 11.72 Total: 40.27 kcal Atomic # 7 Polarization: -141.12 SS G_CDS: -12.17 Total: -153.29 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.04 Total: -27.37 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -82.01 1.89 -80.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293935329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.737 kcal (2) G-P(sol) polarization free energy of solvation -82.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds