Wall clock time and date at job start Tue Mar 31 2020 05:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.78333 * 2 1 4 4 C 1.53244 * 109.62935 * 120.48049 * 2 1 3 5 5 N 1.46893 * 109.34156 * 173.54404 * 4 2 1 6 6 C 1.38400 * 111.00086 * 172.74682 * 5 4 2 7 7 N 1.32735 * 120.17231 * 35.76259 * 6 5 4 8 8 C 1.32114 * 119.99497 * 179.97438 * 7 6 5 9 9 C 1.38647 * 120.36162 * 359.97438 * 8 7 6 10 10 N 1.31845 * 120.34278 * 0.02562 * 9 8 7 11 11 C 1.33036 * 119.99448 * 359.72585 * 10 9 8 12 12 C 1.43198 * 120.17140 * 180.27547 * 11 10 9 13 13 N 5.35237 * 161.52401 * 61.16737 * 2 1 3 14 14 C 1.46899 * 111.26704 * 296.89372 * 5 4 2 15 15 C 1.52789 * 109.42169 * 62.96688 * 14 5 4 16 16 N 1.47077 * 108.76589 * 306.42206 * 15 14 5 17 17 C 1.37334 * 120.88283 * 231.11966 * 16 15 14 18 18 O 1.35092 * 119.99969 * 5.66068 * 17 16 15 19 19 N 1.30103 * 119.99805 * 185.65229 * 17 16 15 20 20 C 1.46502 * 120.00042 * 184.87105 * 19 17 16 21 21 C 1.50701 * 109.47289 * 117.22010 * 20 19 17 22 22 H 1.08002 * 119.99530 * 359.97438 * 21 20 19 23 23 C 1.37873 * 120.00336 * 180.02562 * 21 20 19 24 24 N 1.31507 * 120.00473 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99827 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47536 * 90.00147 * 25 23 21 27 27 H 1.48503 * 109.47272 * 210.00321 * 25 23 21 28 28 H 1.48500 * 109.47237 * 330.00034 * 25 23 21 29 29 H 1.09006 * 109.47273 * 171.49604 * 1 2 3 30 30 H 1.09006 * 109.47489 * 291.49543 * 1 2 3 31 31 H 1.09005 * 109.47528 * 51.49419 * 1 2 3 32 32 H 1.08999 * 109.49338 * 293.50285 * 4 2 1 33 33 H 1.09002 * 109.48887 * 53.55090 * 4 2 1 34 34 H 1.08006 * 119.82222 * 180.02562 * 8 7 6 35 35 H 1.07993 * 119.83072 * 180.02562 * 9 8 7 36 36 H 1.08999 * 109.49472 * 183.06025 * 14 5 4 37 37 H 1.09000 * 109.49706 * 303.14728 * 14 5 4 38 38 H 1.09003 * 109.55643 * 186.60735 * 15 14 5 39 39 H 1.08999 * 109.46063 * 66.18278 * 15 14 5 40 40 H 0.96701 * 113.99802 * 114.81829 * 18 17 16 41 41 H 1.08994 * 109.47569 * 237.22232 * 20 19 17 42 42 H 1.09011 * 109.46791 * 357.22403 * 20 19 17 43 43 H 0.97002 * 120.00844 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0448 -0.7321 1.2439 5 7 3.5054 -0.8642 1.1610 6 6 4.0248 -1.3745 2.3380 7 7 3.3478 -2.2853 3.0264 8 6 3.8472 -2.7704 4.1492 9 6 5.0779 -2.3340 4.6150 10 7 5.7622 -1.4298 3.9422 11 6 5.2747 -0.9355 2.8073 12 6 6.0174 0.0423 2.0705 13 7 6.6065 0.8180 1.4859 14 6 3.9016 -1.6870 0.0104 15 6 3.4620 -0.9994 -1.2813 16 7 2.0241 -0.7028 -1.1937 17 6 1.1648 -1.0772 -2.1975 18 8 1.6151 -1.8258 -3.2280 19 7 -0.0830 -0.7111 -2.1558 20 6 -1.0234 -1.1980 -3.1681 21 6 -2.0929 -2.0259 -2.5034 22 1 -2.0737 -2.1749 -1.4339 23 6 -3.0953 -2.5940 -3.2607 24 7 -4.0288 -3.3161 -2.6806 25 14 -3.1280 -2.3369 -5.1106 26 1 -2.3549 -3.4171 -5.7744 27 1 -4.5333 -2.3678 -5.5899 28 1 -2.5221 -1.0214 -5.4384 29 1 -0.3634 -1.0164 -0.1520 30 1 -0.3634 0.3766 0.9562 31 1 -0.3634 0.6398 -0.8042 32 1 1.7810 -0.1637 2.1357 33 1 1.5919 -1.7223 1.2966 34 1 3.2940 -3.5117 4.7069 35 1 5.4782 -2.7366 5.5336 36 1 4.9845 -1.8110 0.0075 37 1 3.4234 -2.6640 0.0799 38 1 3.6488 -1.6599 -2.1280 39 1 4.0203 -0.0717 -1.4069 40 1 1.2245 -2.7093 -3.2724 41 1 -1.4832 -0.3496 -3.6749 42 1 -0.4897 -1.8100 -3.8954 43 1 -4.7343 -3.7155 -3.2133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331118842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:06 Heat of formation + Delta-G solvation = 127.906107 kcal Electronic energy + Delta-G solvation = -28182.157349 eV Core-core repulsion = 24265.884410 eV Total energy + Delta-G solvation = -3916.272939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.94447 -39.79218 -38.12842 -36.91824 -35.68580 -34.44872 -33.78182 -32.54415 -31.90024 -31.25676 -28.49322 -27.40703 -26.28324 -25.78719 -23.85855 -22.75394 -22.12765 -20.69484 -20.11238 -19.52383 -18.36731 -17.83050 -16.88355 -16.78642 -16.09522 -15.94138 -15.60969 -15.33457 -14.96449 -14.80446 -14.50816 -14.29589 -14.17827 -13.59679 -13.48905 -13.33928 -13.10930 -12.72776 -12.55018 -12.32787 -12.19143 -11.91416 -11.77908 -11.73043 -11.56041 -11.34388 -11.12533 -10.92766 -10.69908 -10.45703 -10.36723 -10.15763 -9.75265 -9.67710 -9.37079 -8.92687 -8.64022 -7.91437 -7.17336 -6.09521 -4.07569 -0.19378 0.42699 2.22879 2.44625 2.71798 2.85715 3.11783 3.25484 3.31105 3.33995 3.36412 3.39314 3.65900 3.93284 4.24544 4.38909 4.57714 4.61088 4.66590 4.67837 4.96003 4.97085 5.07934 5.22971 5.32721 5.37913 5.46089 5.49945 5.68895 5.75842 5.96466 6.09829 6.26086 6.30785 6.46973 6.64868 6.79166 6.82285 7.04109 7.09037 7.11355 7.16106 7.35581 7.60540 7.69421 8.02858 8.46546 8.97339 9.16828 9.53542 11.03355 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.020948 B = 0.002901 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.325416 B = 9650.518740 C =10334.618045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.178 3.822 3 H 0.068 0.932 4 C 0.050 3.950 5 N -0.485 5.485 6 C 0.310 3.690 7 N -0.461 5.461 8 C 0.102 3.898 9 C 0.043 3.957 10 N -0.396 5.396 11 C 0.153 3.847 12 C 0.278 3.722 13 N -0.376 5.376 14 C 0.048 3.952 15 C 0.135 3.865 16 N -0.606 5.606 17 C 0.518 3.482 18 O -0.539 6.539 19 N -0.557 5.557 20 C 0.156 3.844 21 C -0.509 4.509 22 H 0.077 0.923 23 C 0.069 3.931 24 N -0.900 5.900 25 Si 0.876 3.124 26 H -0.278 1.278 27 H -0.286 1.286 28 H -0.266 1.266 29 H 0.078 0.922 30 H 0.036 0.964 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.181 0.819 35 H 0.184 0.816 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.068 0.932 40 H 0.402 0.598 41 H 0.035 0.965 42 H -0.007 1.007 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.083 -0.048 13.983 23.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.075 3.925 3 H 0.086 0.914 4 C -0.078 4.078 5 N -0.206 5.206 6 C 0.075 3.925 7 N -0.178 5.178 8 C -0.062 4.062 9 C -0.120 4.120 10 N -0.112 5.112 11 C 0.010 3.990 12 C -0.041 4.041 13 N -0.053 5.053 14 C -0.079 4.079 15 C 0.010 3.990 16 N -0.338 5.338 17 C 0.204 3.796 18 O -0.341 6.341 19 N -0.298 5.298 20 C 0.028 3.972 21 C -0.548 4.548 22 H 0.095 0.905 23 C -0.133 4.133 24 N -0.539 5.539 25 Si 0.704 3.296 26 H -0.203 1.203 27 H -0.212 1.212 28 H -0.191 1.191 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.117 0.883 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.198 0.802 35 H 0.201 0.799 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.087 0.913 40 H 0.260 0.740 41 H 0.053 0.947 42 H 0.010 0.990 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 19.795 2.438 13.123 23.874 hybrid contribution -0.672 -2.127 -1.002 2.445 sum 19.123 0.311 12.121 22.643 Atomic orbital electron populations 1.22353 0.90443 1.05859 1.00470 1.21093 0.96756 0.93977 0.80724 0.91430 1.22782 0.83163 1.02185 0.99662 1.59717 1.14682 1.46552 0.99682 1.20694 0.89885 0.88851 0.93047 1.68824 1.34427 1.07174 1.07416 1.24090 0.93782 0.96849 0.91466 1.23807 0.93008 0.94487 1.00740 1.68331 1.32612 1.07013 1.03202 1.16932 0.92244 0.96687 0.93145 1.24317 0.93011 0.93152 0.93579 1.81240 1.07866 1.08325 1.07871 1.22622 1.00957 0.95118 0.89175 1.21351 0.81398 1.00417 0.95808 1.46167 1.05086 1.64534 1.18010 1.20432 0.86920 0.89924 0.82307 1.84574 1.72029 1.31111 1.46387 1.73271 0.99307 1.28790 1.28439 1.20033 0.91612 0.95087 0.90478 1.21031 1.07945 1.29418 0.96382 0.90521 1.24914 0.95227 0.94805 0.98351 1.69887 1.14069 1.34046 1.35880 0.86839 0.77425 0.79223 0.86157 1.20339 1.21164 1.19050 0.90303 0.94568 0.88265 0.89527 0.91382 0.80181 0.79908 0.89705 0.92317 0.88560 0.91338 0.74022 0.94717 0.98962 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 7.58 37.16 0.28 -1.92 16 2 C 0.18 2.49 3.66 -67.49 -0.25 2.24 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 4 C 0.05 0.59 4.33 -3.70 -0.02 0.58 16 5 N -0.48 -5.28 3.97 -172.82 -0.69 -5.96 16 6 C 0.31 3.08 5.55 -154.78 -0.86 2.22 16 7 N -0.46 -4.21 9.42 -11.97 -0.11 -4.32 16 8 C 0.10 0.56 11.22 -17.28 -0.19 0.36 16 9 C 0.04 0.21 11.21 -17.40 -0.19 0.02 16 10 N -0.40 -3.32 10.42 -10.74 -0.11 -3.44 16 11 C 0.15 1.49 6.61 -84.55 -0.56 0.93 16 12 C 0.28 3.13 15.05 -22.47 -0.34 2.79 16 13 N -0.38 -4.85 18.54 41.84 0.78 -4.08 16 14 C 0.05 0.49 5.53 -3.93 -0.02 0.47 16 15 C 0.13 1.59 6.62 -3.84 -0.03 1.56 16 16 N -0.61 -9.03 3.09 -167.78 -0.52 -9.55 16 17 C 0.52 9.42 8.12 -88.57 -0.72 8.71 16 18 O -0.54 -9.07 11.11 -16.98 -0.19 -9.26 16 19 N -0.56 -11.90 5.19 -63.70 -0.33 -12.24 16 20 C 0.16 3.81 5.12 -5.19 -0.03 3.79 16 21 C -0.51 -14.31 9.94 -34.44 -0.34 -14.65 16 22 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 23 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 24 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 25 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 29 H 0.08 1.56 6.83 -51.93 -0.35 1.21 16 30 H 0.04 0.52 8.13 -51.93 -0.42 0.10 16 31 H 0.10 1.88 6.46 -51.93 -0.34 1.54 16 32 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 33 H 0.07 0.92 7.86 -51.93 -0.41 0.51 16 34 H 0.18 0.36 8.06 -52.48 -0.42 -0.06 16 35 H 0.18 0.20 8.06 -52.49 -0.42 -0.22 16 36 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.10 1.09 7.02 -51.93 -0.36 0.72 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.40 5.96 8.36 45.56 0.38 6.34 16 41 H 0.04 0.89 7.20 -51.93 -0.37 0.52 16 42 H -0.01 -0.17 5.78 -51.92 -0.30 -0.47 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 360.67 15.07 5.44 5.44 Total: -1.00 -33.96 360.67 -7.72 -41.68 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -4.72 Total: 2.54 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: -3.36 Total: 8.96 kcal Atomic # 7 Polarization: -65.82 SS G_CDS: -0.21 Total: -66.03 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.19 Total: -9.26 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.96 -7.72 -41.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331118842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.583 kcal (2) G-P(sol) polarization free energy of solvation -33.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds