Wall clock time and date at job start Tue Mar 31 2020 05:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.78333 * 2 1 4 4 C 1.53244 * 109.62935 * 120.48049 * 2 1 3 5 5 N 1.46893 * 109.34156 * 173.54404 * 4 2 1 6 6 C 1.38400 * 111.00086 * 172.74682 * 5 4 2 7 7 N 1.32735 * 120.17231 * 35.76259 * 6 5 4 8 8 C 1.32114 * 119.99497 * 179.97438 * 7 6 5 9 9 C 1.38647 * 120.36162 * 359.97438 * 8 7 6 10 10 N 1.31845 * 120.34278 * 0.02562 * 9 8 7 11 11 C 1.33036 * 119.99448 * 359.72585 * 10 9 8 12 12 C 1.43198 * 120.17140 * 180.27547 * 11 10 9 13 13 N 5.35237 * 161.52401 * 61.16737 * 2 1 3 14 14 C 1.46899 * 111.26704 * 296.89372 * 5 4 2 15 15 C 1.52789 * 109.42169 * 62.96688 * 14 5 4 16 16 N 1.47077 * 108.76589 * 306.42206 * 15 14 5 17 17 C 1.37334 * 120.88283 * 231.11966 * 16 15 14 18 18 O 1.35092 * 119.99969 * 5.66068 * 17 16 15 19 19 N 1.30103 * 119.99805 * 185.65229 * 17 16 15 20 20 C 1.46502 * 120.00042 * 184.87105 * 19 17 16 21 21 C 1.50701 * 109.47289 * 117.22010 * 20 19 17 22 22 H 1.08002 * 119.99530 * 359.97438 * 21 20 19 23 23 C 1.37873 * 120.00336 * 180.02562 * 21 20 19 24 24 N 1.31507 * 120.00473 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99827 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47536 * 90.00147 * 25 23 21 27 27 H 1.48503 * 109.47272 * 210.00321 * 25 23 21 28 28 H 1.48500 * 109.47237 * 330.00034 * 25 23 21 29 29 H 1.09006 * 109.47273 * 171.49604 * 1 2 3 30 30 H 1.09006 * 109.47489 * 291.49543 * 1 2 3 31 31 H 1.09005 * 109.47528 * 51.49419 * 1 2 3 32 32 H 1.08999 * 109.49338 * 293.50285 * 4 2 1 33 33 H 1.09002 * 109.48887 * 53.55090 * 4 2 1 34 34 H 1.08006 * 119.82222 * 180.02562 * 8 7 6 35 35 H 1.07993 * 119.83072 * 180.02562 * 9 8 7 36 36 H 1.08999 * 109.49472 * 183.06025 * 14 5 4 37 37 H 1.09000 * 109.49706 * 303.14728 * 14 5 4 38 38 H 1.09003 * 109.55643 * 186.60735 * 15 14 5 39 39 H 1.08999 * 109.46063 * 66.18278 * 15 14 5 40 40 H 0.96701 * 113.99802 * 114.81829 * 18 17 16 41 41 H 1.08994 * 109.47569 * 237.22232 * 20 19 17 42 42 H 1.09011 * 109.46791 * 357.22403 * 20 19 17 43 43 H 0.97002 * 120.00844 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0448 -0.7321 1.2439 5 7 3.5054 -0.8642 1.1610 6 6 4.0248 -1.3745 2.3380 7 7 3.3478 -2.2853 3.0264 8 6 3.8472 -2.7704 4.1492 9 6 5.0779 -2.3340 4.6150 10 7 5.7622 -1.4298 3.9422 11 6 5.2747 -0.9355 2.8073 12 6 6.0174 0.0423 2.0705 13 7 6.6065 0.8180 1.4859 14 6 3.9016 -1.6870 0.0104 15 6 3.4620 -0.9994 -1.2813 16 7 2.0241 -0.7028 -1.1937 17 6 1.1648 -1.0772 -2.1975 18 8 1.6151 -1.8258 -3.2280 19 7 -0.0830 -0.7111 -2.1558 20 6 -1.0234 -1.1980 -3.1681 21 6 -2.0929 -2.0259 -2.5034 22 1 -2.0737 -2.1749 -1.4339 23 6 -3.0953 -2.5940 -3.2607 24 7 -4.0288 -3.3161 -2.6806 25 14 -3.1280 -2.3369 -5.1106 26 1 -2.3549 -3.4171 -5.7744 27 1 -4.5333 -2.3678 -5.5899 28 1 -2.5221 -1.0214 -5.4384 29 1 -0.3634 -1.0164 -0.1520 30 1 -0.3634 0.3766 0.9562 31 1 -0.3634 0.6398 -0.8042 32 1 1.7810 -0.1637 2.1357 33 1 1.5919 -1.7223 1.2966 34 1 3.2940 -3.5117 4.7069 35 1 5.4782 -2.7366 5.5336 36 1 4.9845 -1.8110 0.0075 37 1 3.4234 -2.6640 0.0799 38 1 3.6488 -1.6599 -2.1280 39 1 4.0203 -0.0717 -1.4069 40 1 1.2245 -2.7093 -3.2724 41 1 -1.4832 -0.3496 -3.6749 42 1 -0.4897 -1.8100 -3.8954 43 1 -4.7343 -3.7155 -3.2133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331118842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:05 Heat of formation + Delta-G solvation = 101.270306 kcal Electronic energy + Delta-G solvation = -28183.312364 eV Core-core repulsion = 24265.884410 eV Total energy + Delta-G solvation = -3917.427954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.59144 -40.94170 -39.30291 -37.77060 -36.73785 -35.66481 -35.06781 -34.10790 -33.29859 -32.13950 -29.96380 -28.79986 -27.19740 -26.62655 -24.89280 -24.10999 -23.31125 -22.13354 -20.91280 -20.65003 -19.09425 -18.96619 -18.67708 -18.03873 -17.33251 -16.83133 -16.67508 -16.21557 -16.14910 -16.06966 -15.76525 -15.37922 -15.08646 -14.78361 -14.60034 -14.28892 -14.24022 -14.13613 -13.91354 -13.57713 -13.38605 -13.12084 -12.91228 -12.82059 -12.72194 -12.56167 -12.48465 -12.28261 -12.12557 -12.05271 -11.95734 -11.66044 -11.18535 -10.82626 -10.72896 -10.34651 -9.70701 -9.48505 -8.62969 -8.29527 -6.33258 -0.79990 -0.13084 1.33609 1.37261 1.42967 1.43457 1.48997 1.75208 1.85046 2.11925 2.33853 2.41322 2.67045 3.03817 3.09528 3.33692 3.38731 3.58815 3.79906 3.86879 4.00010 4.06717 4.15014 4.23765 4.30510 4.35475 4.43064 4.60758 4.70596 4.77212 4.85753 4.90725 5.00395 5.09398 5.17467 5.38667 5.43596 5.56005 5.72591 5.76415 5.98737 6.03574 6.11069 6.30984 6.41908 6.54119 6.58984 6.73158 7.28047 7.66113 8.86845 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.020948 B = 0.002901 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.325416 B = 9650.518740 C =10334.618045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.179 3.821 3 H 0.077 0.923 4 C 0.067 3.933 5 N -0.489 5.489 6 C 0.298 3.702 7 N -0.487 5.487 8 C 0.115 3.885 9 C 0.065 3.935 10 N -0.414 5.414 11 C 0.138 3.862 12 C 0.293 3.707 13 N -0.416 5.416 14 C 0.055 3.945 15 C 0.133 3.867 16 N -0.602 5.602 17 C 0.533 3.467 18 O -0.536 6.536 19 N -0.594 5.594 20 C 0.170 3.830 21 C -0.513 4.513 22 H 0.032 0.968 23 C 0.012 3.988 24 N -0.946 5.946 25 Si 0.949 3.051 26 H -0.261 1.261 27 H -0.282 1.282 28 H -0.258 1.258 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.220 0.780 35 H 0.229 0.771 36 H 0.103 0.897 37 H 0.051 0.949 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.413 0.587 41 H 0.020 0.980 42 H 0.003 0.997 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.187 -0.792 14.900 25.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.076 3.924 3 H 0.095 0.905 4 C -0.061 4.061 5 N -0.210 5.210 6 C 0.065 3.935 7 N -0.204 5.204 8 C -0.050 4.050 9 C -0.099 4.099 10 N -0.130 5.130 11 C -0.003 4.003 12 C -0.024 4.024 13 N -0.094 5.094 14 C -0.071 4.071 15 C 0.010 3.990 16 N -0.333 5.333 17 C 0.219 3.781 18 O -0.340 6.340 19 N -0.337 5.337 20 C 0.041 3.959 21 C -0.551 4.551 22 H 0.050 0.950 23 C -0.186 4.186 24 N -0.587 5.587 25 Si 0.773 3.227 26 H -0.186 1.186 27 H -0.208 1.208 28 H -0.182 1.182 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.236 0.764 35 H 0.246 0.754 36 H 0.121 0.879 37 H 0.070 0.930 38 H 0.122 0.878 39 H 0.093 0.907 40 H 0.272 0.728 41 H 0.038 0.962 42 H 0.021 0.979 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 21.971 1.715 14.037 26.129 hybrid contribution -1.225 -2.013 -0.996 2.559 sum 20.746 -0.298 13.041 24.506 Atomic orbital electron populations 1.22066 0.92391 1.02930 1.00415 1.21113 0.95068 0.94835 0.81407 0.90469 1.22484 0.84136 1.00948 0.98575 1.59647 1.13469 1.47325 1.00578 1.20483 0.90220 0.89881 0.92907 1.68833 1.35041 1.07612 1.08951 1.24819 0.93928 0.96178 0.90030 1.24602 0.92150 0.92188 1.01005 1.68386 1.33455 1.08164 1.02992 1.16765 0.92217 0.97267 0.94005 1.24632 0.92239 0.92713 0.92866 1.81242 1.09206 1.09713 1.09191 1.22541 1.01869 0.94384 0.88320 1.21558 0.79166 1.01119 0.97151 1.46448 1.06158 1.63588 1.17065 1.20624 0.86634 0.88542 0.82268 1.84529 1.71809 1.31720 1.45941 1.73364 1.00473 1.31330 1.28572 1.19676 0.91489 0.93845 0.90915 1.21214 1.09434 1.29933 0.94564 0.94968 1.25819 0.94616 0.94337 1.03814 1.70038 1.15098 1.35475 1.38082 0.85687 0.77744 0.79820 0.79487 1.18563 1.20782 1.18195 0.93950 0.92706 0.90819 0.88505 0.93062 0.76359 0.75442 0.87883 0.93019 0.87811 0.90669 0.72756 0.96240 0.97922 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.12 7.58 71.98 0.55 -3.57 16 2 C 0.18 4.98 3.66 44.96 0.16 5.15 16 3 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 4 C 0.07 1.56 4.33 86.39 0.37 1.93 16 5 N -0.49 -10.07 3.97 -700.67 -2.78 -12.85 16 6 C 0.30 5.42 5.55 133.51 0.74 6.16 16 7 N -0.49 -7.76 9.42 -191.79 -1.81 -9.56 16 8 C 0.12 0.80 11.22 84.75 0.95 1.76 16 9 C 0.06 0.37 11.21 84.79 0.95 1.32 16 10 N -0.41 -5.82 10.42 -187.89 -1.96 -7.77 16 11 C 0.14 2.46 6.61 40.77 0.27 2.73 16 12 C 0.29 6.37 15.05 88.33 1.33 7.70 16 13 N -0.42 -10.60 18.54 19.00 0.35 -10.25 16 14 C 0.06 1.07 5.53 86.23 0.48 1.54 16 15 C 0.13 2.96 6.62 86.20 0.57 3.53 16 16 N -0.60 -17.71 3.09 -795.20 -2.46 -20.16 16 17 C 0.53 19.43 8.12 179.63 1.46 20.89 16 18 O -0.54 -17.55 11.11 -83.68 -0.93 -18.48 16 19 N -0.59 -26.15 5.19 -469.71 -2.44 -28.59 16 20 C 0.17 8.46 5.12 85.63 0.44 8.90 16 21 C -0.51 -29.99 9.94 25.60 0.25 -29.74 16 22 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 23 C 0.01 0.68 5.47 84.65 0.46 1.15 16 24 N -0.95 -58.94 13.96 21.44 0.30 -58.64 16 25 Si 0.95 44.34 27.47 68.60 1.88 46.22 16 26 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 27 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 28 H -0.26 -11.64 6.54 99.48 0.65 -10.99 16 29 H 0.04 1.77 6.83 -2.38 -0.02 1.76 16 30 H 0.05 1.62 8.13 -2.38 -0.02 1.60 16 31 H 0.07 2.92 6.46 -2.38 -0.02 2.91 16 32 H 0.10 2.06 8.09 -2.39 -0.02 2.04 16 33 H 0.05 1.38 7.86 -2.39 -0.02 1.36 16 34 H 0.22 -0.26 8.06 -2.91 -0.02 -0.28 16 35 H 0.23 -0.84 8.06 -2.91 -0.02 -0.87 16 36 H 0.10 1.64 8.09 -2.39 -0.02 1.62 16 37 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.10 2.17 7.02 -2.39 -0.02 2.15 16 39 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.41 11.87 8.36 -74.06 -0.62 11.25 16 41 H 0.02 1.02 7.20 -2.39 -0.02 1.01 16 42 H 0.00 0.14 5.78 -2.38 -0.01 0.13 16 43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -77.94 360.67 -0.46 -78.40 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.39 Total: 12.25 kcal Atomic # 6 Polarization: 20.45 SS G_CDS: 8.99 Total: 29.43 kcal Atomic # 7 Polarization: -137.04 SS G_CDS: -10.79 Total: -147.83 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.93 Total: -18.48 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.22 kcal Total: -77.94 -0.46 -78.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331118842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.671 kcal (2) G-P(sol) polarization free energy of solvation -77.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds