Wall clock time and date at job start Tue Mar 31 2020 05:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34955 * 125.52858 * 2 1 4 4 C 1.41205 * 108.24130 * 180.02562 * 3 2 1 5 5 N 1.32934 * 126.37936 * 179.97438 * 4 3 2 6 6 C 1.33835 * 119.99780 * 0.02562 * 5 4 3 7 7 O 1.21843 * 119.99830 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00420 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00391 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.47273 * 180.02562 * 9 8 6 11 11 C 1.38626 * 120.45144 * 94.99495 * 10 9 8 12 12 C 1.38568 * 118.39782 * 180.02562 * 11 10 9 13 13 N 1.32347 * 119.11022 * 0.02562 * 12 11 10 14 14 C 1.31776 * 120.81812 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.12364 * 180.02562 * 14 13 12 16 16 N 1.31813 * 121.75485 * 359.72064 * 14 13 12 17 17 N 1.37423 * 107.24890 * 0.22674 * 4 3 2 18 18 H 0.96994 * 126.36745 * 179.78265 * 17 4 3 19 19 N 1.36459 * 125.52068 * 180.02562 * 2 1 3 20 20 C 1.46498 * 125.85459 * 359.97438 * 19 2 1 21 21 C 1.50705 * 109.47265 * 84.99421 * 20 19 2 22 22 H 1.07999 * 119.99737 * 359.97438 * 21 20 19 23 23 C 1.37874 * 119.99885 * 179.97438 * 21 20 19 24 24 N 1.31507 * 120.00224 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99704 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47087 * 90.00450 * 25 23 21 27 27 H 1.48508 * 109.47001 * 210.00082 * 25 23 21 28 28 H 1.48496 * 109.47425 * 330.00288 * 25 23 21 29 29 H 1.09000 * 109.47149 * 89.97173 * 1 2 3 30 30 H 1.08995 * 109.47529 * 209.97817 * 1 2 3 31 31 H 1.09007 * 109.46637 * 329.97984 * 1 2 3 32 32 H 1.07998 * 125.87866 * 0.02562 * 3 2 1 33 33 H 0.96999 * 119.99625 * 0.02562 * 8 6 5 34 34 H 1.09000 * 109.46757 * 299.99822 * 9 8 6 35 35 H 1.08988 * 109.47120 * 60.00074 * 9 8 6 36 36 H 1.07995 * 120.79712 * 0.03244 * 11 10 9 37 37 H 1.08002 * 120.44549 * 179.97438 * 12 11 10 38 38 H 1.09003 * 109.46706 * 90.00225 * 15 14 13 39 39 H 1.08993 * 109.47436 * 209.99821 * 15 14 13 40 40 H 1.08999 * 109.47340 * 330.00918 * 15 14 13 41 41 H 1.08999 * 109.47420 * 204.99479 * 20 19 2 42 42 H 1.08997 * 109.46984 * 324.99805 * 20 19 2 43 43 H 0.96999 * 120.00333 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2913 1.0983 0.0000 4 6 3.6395 0.6787 -0.0006 5 7 4.7104 1.4663 -0.0013 6 6 4.5627 2.7965 -0.0009 7 8 3.4467 3.2855 -0.0004 8 7 5.6484 3.5951 -0.0021 9 6 5.4867 5.0512 -0.0011 10 6 6.8433 5.7072 -0.0034 11 6 7.4282 6.1073 -1.1949 12 6 8.6771 6.7058 -1.1476 13 7 9.2664 6.8741 0.0255 14 6 8.6800 6.4810 1.1382 15 6 9.3855 6.6919 2.4531 16 7 7.4903 5.9137 1.1323 17 7 3.6386 -0.6955 -0.0062 18 1 4.4192 -1.2712 -0.0108 19 7 2.2998 -1.1106 -0.0005 20 6 1.8320 -2.4989 -0.0006 21 6 1.5535 -2.9351 -1.4160 22 1 1.7091 -2.2469 -2.2336 23 6 1.1002 -4.2128 -1.6670 24 7 0.9103 -5.0506 -0.6714 25 14 0.7558 -4.7536 -3.4215 26 1 1.9863 -5.3420 -4.0087 27 1 -0.3278 -5.7692 -3.4227 28 1 0.3349 -3.5798 -4.2279 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3634 -0.8901 0.5135 31 1 -0.3633 0.8899 0.5142 32 1 1.9469 2.1219 0.0004 33 1 6.5368 3.2058 -0.0036 34 1 4.9346 5.3559 -0.8902 35 1 4.9373 5.3551 0.8897 36 1 6.9227 5.9563 -2.1371 37 1 9.1634 7.0299 -2.0558 38 1 9.1103 7.6646 2.8610 39 1 9.0927 5.9087 3.1522 40 1 10.4636 6.6553 2.2970 41 1 2.5987 -3.1408 0.4332 42 1 0.9185 -2.5745 0.5892 43 1 0.5910 -5.9494 -0.8479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348153256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:03 Heat of formation + Delta-G solvation = 116.279488 kcal Electronic energy + Delta-G solvation = -26350.293028 eV Core-core repulsion = 22433.515921 eV Total energy + Delta-G solvation = -3916.777107 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.37690 -40.85029 -38.84878 -35.61134 -34.28950 -33.73126 -33.12388 -32.87337 -32.19333 -30.64135 -28.90144 -27.64844 -27.45725 -26.42176 -23.76790 -23.19625 -22.40515 -21.42949 -19.88732 -19.53090 -17.95622 -17.64585 -17.00599 -16.55229 -16.03471 -15.87499 -15.39897 -15.24911 -15.04832 -14.87383 -14.50934 -14.11573 -13.95613 -13.68805 -13.09665 -12.89856 -12.88358 -12.77708 -12.72915 -12.61416 -12.54372 -12.29467 -12.01157 -11.79086 -11.33607 -11.16291 -11.05829 -10.99890 -10.52629 -10.35451 -9.82491 -9.63845 -9.50560 -9.44628 -8.91768 -8.83520 -8.67677 -8.35600 -6.87782 -6.47595 -4.64484 0.56971 0.73514 1.78302 2.08241 3.05289 3.12506 3.13765 3.17770 3.28658 3.57438 3.74323 3.85501 4.06563 4.18487 4.47866 4.64075 4.69659 4.77501 4.81993 5.06326 5.06600 5.14448 5.25341 5.35800 5.55064 5.58069 5.65263 5.70392 5.81492 5.88216 6.06153 6.12863 6.15182 6.36430 6.54223 6.63230 6.71176 6.74388 6.99808 7.37098 7.40712 7.52777 7.67549 7.82170 7.87463 8.27140 8.42214 8.47375 9.05798 9.60043 10.53366 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.024257 B = 0.001939 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.010648 B =14438.493652 C =14680.561369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.189 3.811 3 C -0.334 4.334 4 C 0.489 3.511 5 N -0.714 5.714 6 C 0.689 3.311 7 O -0.630 6.630 8 N -0.725 5.725 9 C 0.191 3.809 10 C 0.169 3.831 11 C -0.217 4.217 12 C 0.150 3.850 13 N -0.521 5.521 14 C 0.315 3.685 15 C -0.085 4.085 16 N -0.504 5.504 17 N -0.471 5.471 18 H 0.444 0.556 19 N -0.344 5.344 20 C 0.255 3.745 21 C -0.554 4.554 22 H 0.069 0.931 23 C 0.070 3.930 24 N -0.887 5.887 25 Si 0.908 3.092 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.270 1.270 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.183 0.817 33 H 0.397 0.603 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.151 0.849 37 H 0.170 0.830 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.050 0.950 42 H 0.067 0.933 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.243 16.748 1.755 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 C -0.367 4.367 4 C 0.236 3.764 5 N -0.479 5.479 6 C 0.388 3.612 7 O -0.512 6.512 8 N -0.380 5.380 9 C 0.065 3.935 10 C 0.022 3.978 11 C -0.239 4.239 12 C -0.016 4.016 13 N -0.236 5.236 14 C 0.048 3.952 15 C -0.144 4.144 16 N -0.219 5.219 17 N -0.194 5.194 18 H 0.291 0.709 19 N -0.131 5.131 20 C 0.138 3.862 21 C -0.593 4.593 22 H 0.087 0.913 23 C -0.135 4.135 24 N -0.523 5.523 25 Si 0.735 3.265 26 H -0.202 1.202 27 H -0.207 1.207 28 H -0.194 1.194 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.200 0.800 33 H 0.230 0.770 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.169 0.831 37 H 0.187 0.813 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.642 16.425 2.694 19.235 hybrid contribution -0.252 -0.814 -1.905 2.087 sum 9.390 15.610 0.789 18.234 Atomic orbital electron populations 1.20586 0.86464 1.03810 1.04219 1.21291 0.94427 0.85592 0.92435 1.22176 0.91081 1.00244 1.23176 1.18647 0.91021 0.82009 0.84689 1.68008 1.28731 1.03702 1.47418 1.16512 0.82632 0.84941 0.77109 1.90739 1.24180 1.78580 1.57742 1.44473 1.08815 1.03599 1.81114 1.19845 0.89497 0.80381 1.03771 1.21818 0.95745 0.91865 0.88367 1.22854 0.98184 1.02160 1.00735 1.23255 0.91220 0.90917 0.96170 1.68262 1.36871 1.19398 0.99050 1.23324 0.87769 0.89243 0.94855 1.20577 0.99992 1.03682 0.90119 1.68159 1.08981 1.14207 1.30526 1.44388 0.98889 1.04930 1.71149 0.70886 1.47857 0.92565 1.08074 1.64581 1.20002 0.96415 0.70296 0.99438 1.21385 1.47487 0.98676 0.91712 0.91307 1.24944 0.94324 0.95834 0.98397 1.69893 1.44134 1.06906 1.31409 0.86313 0.78327 0.78706 0.83174 1.20244 1.20692 1.19443 0.89217 0.90158 0.89600 0.80006 0.76962 0.89917 0.89842 0.83095 0.81253 0.89602 0.89431 0.89610 0.93186 0.91508 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.31 10.09 36.01 0.36 -0.95 16 2 C 0.19 3.40 6.92 -81.70 -0.57 2.83 16 3 C -0.33 -6.51 9.41 -39.62 -0.37 -6.88 16 4 C 0.49 9.80 8.07 -155.29 -1.25 8.54 16 5 N -0.71 -14.41 10.59 -15.79 -0.17 -14.58 16 6 C 0.69 13.61 8.47 -87.76 -0.74 12.87 16 7 O -0.63 -13.65 13.26 5.06 0.07 -13.58 16 8 N -0.72 -11.36 5.55 -66.62 -0.37 -11.72 16 9 C 0.19 2.48 6.03 -5.20 -0.03 2.45 16 10 C 0.17 1.95 6.19 -82.24 -0.51 1.44 16 11 C -0.22 -1.97 9.84 -39.32 -0.39 -2.36 16 12 C 0.15 1.30 11.30 -17.21 -0.19 1.10 16 13 N -0.52 -5.55 10.33 -10.73 -0.11 -5.67 16 14 C 0.32 3.47 7.64 -157.19 -1.20 2.27 16 15 C -0.09 -0.66 10.32 36.01 0.37 -0.28 16 16 N -0.50 -6.25 10.27 -6.98 -0.07 -6.32 16 17 N -0.47 -8.72 7.38 31.33 0.23 -8.48 16 18 H 0.44 7.22 8.96 -182.55 -1.64 5.59 16 19 N -0.34 -6.61 3.63 -58.04 -0.21 -6.83 16 20 C 0.25 5.38 5.93 -5.19 -0.03 5.35 16 21 C -0.55 -13.16 9.39 -34.44 -0.32 -13.48 16 22 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 23 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 24 N -0.89 -22.41 13.29 55.43 0.74 -21.68 16 25 Si 0.91 19.19 29.54 -169.99 -5.02 14.17 16 26 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 27 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 28 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 29 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.08 1.12 7.14 -51.93 -0.37 0.75 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.18 3.70 5.77 -52.49 -0.30 3.39 16 33 H 0.40 5.85 8.56 -40.82 -0.35 5.50 16 34 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 35 H 0.08 1.18 8.14 -51.94 -0.42 0.75 16 36 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.42 7.18 -51.93 -0.37 1.04 16 43 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 375.15 15.07 5.65 5.65 Total: -1.00 -31.07 375.15 -11.04 -42.11 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -6.80 Total: 12.43 kcal Atomic # 6 Polarization: 19.48 SS G_CDS: -4.98 Total: 14.51 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: 0.04 Total: -75.28 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.07 Total: -13.58 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.07 -11.04 -42.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348153256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.385 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds