Wall clock time and date at job start Tue Mar 31 2020 05:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34955 * 125.52858 * 2 1 4 4 C 1.41205 * 108.24130 * 180.02562 * 3 2 1 5 5 N 1.32934 * 126.37936 * 179.97438 * 4 3 2 6 6 C 1.33835 * 119.99780 * 0.02562 * 5 4 3 7 7 O 1.21843 * 119.99830 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00420 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00391 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.47273 * 180.02562 * 9 8 6 11 11 C 1.38626 * 120.45144 * 94.99495 * 10 9 8 12 12 C 1.38568 * 118.39782 * 180.02562 * 11 10 9 13 13 N 1.32347 * 119.11022 * 0.02562 * 12 11 10 14 14 C 1.31776 * 120.81812 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.12364 * 180.02562 * 14 13 12 16 16 N 1.31813 * 121.75485 * 359.72064 * 14 13 12 17 17 N 1.37423 * 107.24890 * 0.22674 * 4 3 2 18 18 H 0.96994 * 126.36745 * 179.78265 * 17 4 3 19 19 N 1.36459 * 125.52068 * 180.02562 * 2 1 3 20 20 C 1.46498 * 125.85459 * 359.97438 * 19 2 1 21 21 C 1.50705 * 109.47265 * 84.99421 * 20 19 2 22 22 H 1.07999 * 119.99737 * 359.97438 * 21 20 19 23 23 C 1.37874 * 119.99885 * 179.97438 * 21 20 19 24 24 N 1.31507 * 120.00224 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99704 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47087 * 90.00450 * 25 23 21 27 27 H 1.48508 * 109.47001 * 210.00082 * 25 23 21 28 28 H 1.48496 * 109.47425 * 330.00288 * 25 23 21 29 29 H 1.09000 * 109.47149 * 89.97173 * 1 2 3 30 30 H 1.08995 * 109.47529 * 209.97817 * 1 2 3 31 31 H 1.09007 * 109.46637 * 329.97984 * 1 2 3 32 32 H 1.07998 * 125.87866 * 0.02562 * 3 2 1 33 33 H 0.96999 * 119.99625 * 0.02562 * 8 6 5 34 34 H 1.09000 * 109.46757 * 299.99822 * 9 8 6 35 35 H 1.08988 * 109.47120 * 60.00074 * 9 8 6 36 36 H 1.07995 * 120.79712 * 0.03244 * 11 10 9 37 37 H 1.08002 * 120.44549 * 179.97438 * 12 11 10 38 38 H 1.09003 * 109.46706 * 90.00225 * 15 14 13 39 39 H 1.08993 * 109.47436 * 209.99821 * 15 14 13 40 40 H 1.08999 * 109.47340 * 330.00918 * 15 14 13 41 41 H 1.08999 * 109.47420 * 204.99479 * 20 19 2 42 42 H 1.08997 * 109.46984 * 324.99805 * 20 19 2 43 43 H 0.96999 * 120.00333 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2913 1.0983 0.0000 4 6 3.6395 0.6787 -0.0006 5 7 4.7104 1.4663 -0.0013 6 6 4.5627 2.7965 -0.0009 7 8 3.4467 3.2855 -0.0004 8 7 5.6484 3.5951 -0.0021 9 6 5.4867 5.0512 -0.0011 10 6 6.8433 5.7072 -0.0034 11 6 7.4282 6.1073 -1.1949 12 6 8.6771 6.7058 -1.1476 13 7 9.2664 6.8741 0.0255 14 6 8.6800 6.4810 1.1382 15 6 9.3855 6.6919 2.4531 16 7 7.4903 5.9137 1.1323 17 7 3.6386 -0.6955 -0.0062 18 1 4.4192 -1.2712 -0.0108 19 7 2.2998 -1.1106 -0.0005 20 6 1.8320 -2.4989 -0.0006 21 6 1.5535 -2.9351 -1.4160 22 1 1.7091 -2.2469 -2.2336 23 6 1.1002 -4.2128 -1.6670 24 7 0.9103 -5.0506 -0.6714 25 14 0.7558 -4.7536 -3.4215 26 1 1.9863 -5.3420 -4.0087 27 1 -0.3278 -5.7692 -3.4227 28 1 0.3349 -3.5798 -4.2279 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3634 -0.8901 0.5135 31 1 -0.3633 0.8899 0.5142 32 1 1.9469 2.1219 0.0004 33 1 6.5368 3.2058 -0.0036 34 1 4.9346 5.3559 -0.8902 35 1 4.9373 5.3551 0.8897 36 1 6.9227 5.9563 -2.1371 37 1 9.1634 7.0299 -2.0558 38 1 9.1103 7.6646 2.8610 39 1 9.0927 5.9087 3.1522 40 1 10.4636 6.6553 2.2970 41 1 2.5987 -3.1408 0.4332 42 1 0.9185 -2.5745 0.5892 43 1 0.5910 -5.9494 -0.8479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348153256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:02 Heat of formation + Delta-G solvation = 95.299860 kcal Electronic energy + Delta-G solvation = -26351.202773 eV Core-core repulsion = 22433.515921 eV Total energy + Delta-G solvation = -3917.686852 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.37143 -42.14916 -40.30804 -36.77057 -35.87148 -34.77024 -34.50963 -33.92272 -33.65134 -32.26066 -29.65643 -28.86309 -28.76971 -27.89926 -25.00659 -24.41333 -23.48156 -22.71221 -21.34674 -20.96232 -19.14081 -18.78328 -18.67536 -17.89685 -17.29673 -16.93967 -16.62994 -16.51493 -16.18686 -16.10752 -15.89425 -15.56426 -15.25221 -14.56658 -14.39339 -14.28581 -14.21335 -13.88291 -13.84189 -13.68619 -13.55444 -13.46842 -13.19368 -13.15778 -12.96982 -12.72492 -12.29293 -12.03889 -11.90879 -11.85196 -11.25184 -11.09822 -10.76617 -10.46700 -10.31589 -10.30054 -10.01337 -9.92730 -8.54235 -8.21024 -6.54191 -0.22761 -0.00878 0.28040 0.58518 1.38504 1.42843 1.51373 1.62810 2.21848 2.32273 2.73679 2.81369 2.95131 3.04471 3.10044 3.13218 3.43879 3.71274 3.89222 4.10570 4.22302 4.32614 4.34500 4.45431 4.52371 4.56796 4.67938 4.70357 4.73044 4.87339 4.90447 4.91152 4.97283 5.04688 5.14038 5.30030 5.42573 5.52602 5.64268 5.72099 5.92748 5.98593 6.16088 6.34988 6.59379 6.86308 6.94807 7.04968 7.19252 8.08604 8.68087 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.024257 B = 0.001939 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.010648 B =14438.493652 C =14680.561369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.196 3.804 3 C -0.347 4.347 4 C 0.475 3.525 5 N -0.723 5.723 6 C 0.678 3.322 7 O -0.655 6.655 8 N -0.713 5.713 9 C 0.195 3.805 10 C 0.152 3.848 11 C -0.209 4.209 12 C 0.153 3.847 13 N -0.533 5.533 14 C 0.300 3.700 15 C -0.083 4.083 16 N -0.531 5.531 17 N -0.468 5.468 18 H 0.451 0.549 19 N -0.350 5.350 20 C 0.268 3.732 21 C -0.560 4.560 22 H 0.058 0.942 23 C 0.031 3.969 24 N -0.912 5.912 25 Si 0.963 3.037 26 H -0.278 1.278 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.175 0.825 33 H 0.402 0.598 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.175 0.825 37 H 0.208 0.792 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.041 0.959 42 H 0.070 0.930 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.596 17.483 0.641 19.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.071 3.929 3 C -0.379 4.379 4 C 0.222 3.778 5 N -0.488 5.488 6 C 0.377 3.623 7 O -0.539 6.539 8 N -0.367 5.367 9 C 0.070 3.930 10 C 0.006 3.994 11 C -0.231 4.231 12 C -0.013 4.013 13 N -0.248 5.248 14 C 0.033 3.967 15 C -0.142 4.142 16 N -0.247 5.247 17 N -0.191 5.191 18 H 0.300 0.700 19 N -0.137 5.137 20 C 0.151 3.849 21 C -0.598 4.598 22 H 0.076 0.924 23 C -0.171 4.171 24 N -0.550 5.550 25 Si 0.788 3.212 26 H -0.204 1.204 27 H -0.202 1.202 28 H -0.194 1.194 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.131 0.869 32 H 0.192 0.808 33 H 0.236 0.764 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.193 0.807 37 H 0.225 0.775 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.026 17.179 1.587 19.954 hybrid contribution -0.308 -0.975 -1.559 1.865 sum 9.718 16.204 0.028 18.895 Atomic orbital electron populations 1.20770 0.83705 1.05349 1.05134 1.21842 0.95983 0.84541 0.90577 1.22101 0.91212 1.00278 1.24346 1.18857 0.91483 0.82465 0.84988 1.68062 1.28934 1.04059 1.47784 1.16782 0.83213 0.85104 0.77238 1.90713 1.25265 1.78909 1.59021 1.44424 1.08019 1.04523 1.79761 1.19856 0.90866 0.78780 1.03460 1.21651 0.95287 0.93037 0.89408 1.23091 0.98287 1.01054 1.00664 1.23921 0.90922 0.89618 0.96821 1.68349 1.37185 1.19642 0.99633 1.23844 0.87554 0.89116 0.96145 1.20662 1.00380 1.04262 0.88851 1.68115 1.09904 1.15328 1.31308 1.44367 0.98990 1.04652 1.71083 0.69994 1.47767 0.93046 1.07888 1.64980 1.19702 0.96162 0.70934 0.98147 1.21527 1.47175 0.98596 0.92527 0.92405 1.25579 0.94254 0.95959 1.01345 1.69957 1.44969 1.07235 1.32860 0.85472 0.78046 0.78242 0.79482 1.20367 1.20221 1.19360 0.88396 0.89812 0.86854 0.80782 0.76421 0.88916 0.91414 0.80707 0.77507 0.88392 0.89544 0.88448 0.94090 0.91277 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.44 10.09 71.24 0.72 -1.72 16 2 C 0.20 6.91 6.92 41.08 0.28 7.20 16 3 C -0.35 -13.49 9.41 22.24 0.21 -13.28 16 4 C 0.47 19.09 8.07 133.95 1.08 20.17 16 5 N -0.72 -29.40 10.59 -322.55 -3.42 -32.82 16 6 C 0.68 27.01 8.47 179.35 1.52 28.53 16 7 O -0.65 -28.71 13.26 -4.81 -0.06 -28.77 16 8 N -0.71 -22.37 5.55 -482.84 -2.68 -25.05 16 9 C 0.20 5.08 6.03 85.63 0.52 5.60 16 10 C 0.15 3.41 6.19 42.58 0.26 3.67 16 11 C -0.21 -3.38 9.84 22.44 0.22 -3.16 16 12 C 0.15 2.26 11.30 84.69 0.96 3.22 16 13 N -0.53 -10.48 10.33 -187.86 -1.94 -12.42 16 14 C 0.30 6.38 7.64 138.75 1.06 7.44 16 15 C -0.08 -1.22 10.32 71.24 0.74 -0.48 16 16 N -0.53 -13.05 10.27 -176.01 -1.81 -14.86 16 17 N -0.47 -17.27 7.38 -54.79 -0.40 -17.68 16 18 H 0.45 14.72 8.96 -213.29 -1.91 12.81 16 19 N -0.35 -13.30 3.63 -337.54 -1.23 -14.53 16 20 C 0.27 11.19 5.93 85.64 0.51 11.70 16 21 C -0.56 -26.22 9.39 25.60 0.24 -25.98 16 22 H 0.06 2.81 7.81 -2.91 -0.02 2.78 16 23 C 0.03 1.48 5.46 84.66 0.46 1.94 16 24 N -0.91 -45.58 13.29 21.44 0.28 -45.30 16 25 Si 0.96 38.61 29.54 68.60 2.03 40.64 16 26 H -0.28 -11.14 7.11 99.48 0.71 -10.44 16 27 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 28 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 29 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.08 2.20 7.14 -2.39 -0.02 2.18 16 31 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 32 H 0.18 7.12 5.77 -2.91 -0.02 7.11 16 33 H 0.40 11.79 8.56 -92.71 -0.79 11.00 16 34 H 0.09 2.21 8.06 -2.39 -0.02 2.19 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.18 1.90 8.06 -2.91 -0.02 1.87 16 37 H 0.21 1.33 8.06 -2.91 -0.02 1.30 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.07 2.88 7.18 -2.39 -0.02 2.87 16 43 H 0.27 13.00 8.31 -92.71 -0.77 12.23 16 Total: -1.00 -65.98 375.15 -2.09 -68.07 By element: Atomic # 1 Polarization: 39.51 SS G_CDS: -1.63 Total: 37.88 kcal Atomic # 6 Polarization: 36.07 SS G_CDS: 8.78 Total: 44.84 kcal Atomic # 7 Polarization: -151.46 SS G_CDS: -11.19 Total: -162.65 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.06 Total: -28.77 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -65.98 -2.09 -68.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348153256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.367 kcal (2) G-P(sol) polarization free energy of solvation -65.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds