Wall clock time and date at job start Tue Mar 31 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47273 * 2 1 4 4 H 1.09005 * 109.62967 * 305.39881 * 3 2 1 5 5 C 1.53242 * 109.63570 * 185.00115 * 3 2 1 6 6 N 1.46463 * 109.86417 * 178.09304 * 5 3 2 7 7 C 1.46906 * 111.00094 * 197.76387 * 6 5 3 8 8 C 1.52995 * 109.47283 * 300.06572 * 7 6 5 9 9 C 1.50702 * 109.47037 * 179.97438 * 8 7 6 10 10 O 1.21274 * 119.99884 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99532 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00562 * 0.02562 * 11 9 8 13 13 C 1.46505 * 119.99488 * 179.97438 * 11 9 8 14 14 C 1.50701 * 109.46998 * 90.00145 * 13 11 9 15 15 H 1.08003 * 120.00177 * 359.97438 * 14 13 11 16 16 C 1.37874 * 120.00268 * 179.97438 * 14 13 11 17 17 N 1.31518 * 119.99690 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00309 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46936 * 60.00198 * 18 16 14 20 20 H 1.48501 * 109.46866 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.46866 * 300.00233 * 18 16 14 22 22 C 1.46468 * 112.56001 * 72.65845 * 6 5 3 23 23 C 1.53249 * 109.79284 * 287.38393 * 22 6 5 24 24 H 1.09004 * 109.63147 * 181.67220 * 23 22 6 25 25 C 1.53003 * 109.63240 * 302.25518 * 23 22 6 26 26 S 1.81733 * 108.58734 * 62.03797 * 23 22 6 27 27 O 1.42100 * 109.48156 * 192.81434 * 26 23 22 28 28 H 1.09000 * 109.46684 * 300.00307 * 1 2 3 29 29 H 1.08991 * 109.47260 * 59.99708 * 1 2 3 30 30 H 1.08995 * 109.47049 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47122 * 239.99958 * 2 1 3 32 32 H 1.09003 * 109.46902 * 120.00007 * 2 1 3 33 33 H 1.09003 * 109.40485 * 57.97068 * 5 3 2 34 34 H 1.09006 * 109.34481 * 298.17529 * 5 3 2 35 35 H 1.09001 * 109.46599 * 60.06669 * 7 6 5 36 36 H 1.08996 * 109.46975 * 180.02562 * 7 6 5 37 37 H 1.08996 * 109.47364 * 300.00111 * 8 7 6 38 38 H 1.09004 * 109.46967 * 59.99975 * 8 7 6 39 39 H 1.08996 * 109.47264 * 89.99610 * 12 11 9 40 40 H 1.09002 * 109.46819 * 210.00542 * 12 11 9 41 41 H 1.09006 * 109.46893 * 329.99810 * 12 11 9 42 42 H 1.09000 * 109.46943 * 209.99653 * 13 11 9 43 43 H 1.08991 * 109.47423 * 330.00118 * 13 11 9 44 44 H 0.96997 * 119.99754 * 179.97438 * 17 16 14 45 45 H 1.09002 * 109.40716 * 47.46253 * 22 6 5 46 46 H 1.08997 * 109.41022 * 167.30457 * 22 6 5 47 47 H 1.09003 * 109.46993 * 60.00125 * 25 23 22 48 48 H 1.08997 * 109.47370 * 179.97438 * 25 23 22 49 49 H 1.08999 * 109.47237 * 300.00574 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6014 1.9859 -0.8369 5 6 3.5673 1.4486 -0.1258 6 7 4.0573 2.8281 -0.1720 7 6 5.4252 2.8834 -0.7048 8 6 6.3546 2.0610 0.1900 9 6 7.7578 2.1172 -0.3569 10 8 7.9914 2.7529 -1.3630 11 7 8.7529 1.4611 0.2720 12 6 8.4706 0.6928 1.4870 13 6 10.1169 1.5153 -0.2600 14 6 10.8462 2.6865 0.3461 15 1 10.3439 3.3268 1.0561 16 6 12.1548 2.9408 -0.0059 17 7 12.7664 2.1615 -0.8710 18 14 13.0587 4.3931 0.7447 19 1 13.1083 4.2360 2.2206 20 1 14.4413 4.4479 0.2055 21 1 12.3449 5.6499 0.4044 22 6 3.9727 3.4983 1.1276 23 6 2.5096 3.8178 1.4525 24 1 2.4524 4.3428 2.4061 25 6 1.9157 4.6901 0.3447 26 16 1.5862 2.2564 1.5622 27 8 0.1918 2.5297 1.5661 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8575 0.9304 -1.0398 34 1 4.0025 0.9383 0.7335 35 1 5.4383 2.4748 -1.7152 36 1 5.7646 3.9189 -0.7278 37 1 6.3415 2.4695 1.2004 38 1 6.0150 1.0255 0.2123 39 1 8.2118 -0.3312 1.2175 40 1 9.3528 0.6882 2.1272 41 1 7.6370 1.1498 2.0204 42 1 10.6410 0.5926 -0.0108 43 1 10.0801 1.6312 -1.3431 44 1 13.6869 2.3406 -1.1189 45 1 4.3808 2.8452 1.8991 46 1 4.5472 4.4240 1.0958 47 1 1.9675 4.1570 -0.6047 48 1 0.8751 4.9154 0.5781 49 1 2.4813 5.6190 0.2710 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352890884.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:00 Heat of formation + Delta-G solvation = -74.443570 kcal Electronic energy + Delta-G solvation = -27242.594539 eV Core-core repulsion = 23524.238603 eV Total energy + Delta-G solvation = -3718.355936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.61121 -38.40405 -35.97854 -35.26793 -34.87443 -33.67278 -32.63623 -30.67625 -29.01571 -27.72354 -26.44429 -25.68366 -24.23011 -23.11493 -22.12028 -21.89233 -20.41272 -18.49346 -17.49882 -16.79798 -16.58404 -16.31945 -16.06082 -15.68632 -15.46788 -14.99871 -14.85130 -14.47224 -14.29728 -14.05535 -13.76682 -13.52962 -13.23577 -12.90153 -12.71861 -12.47983 -12.37401 -12.27797 -12.20110 -12.10873 -11.99037 -11.82968 -11.79859 -11.58353 -11.30162 -11.21387 -11.21011 -10.99905 -10.91443 -10.75813 -10.59368 -10.19125 -9.74418 -9.68167 -9.00381 -8.51634 -8.46089 -8.41530 -7.68868 -6.07414 -4.12509 1.35060 2.27143 3.28961 3.33578 3.34272 3.40394 3.47391 3.57853 3.96354 4.40533 4.41768 4.51189 4.60865 4.73378 4.76559 4.91593 5.00228 5.07077 5.10971 5.11630 5.22129 5.27660 5.31638 5.40868 5.46408 5.47637 5.52536 5.58263 5.65702 5.70156 5.70336 5.72985 5.82759 5.85801 5.92525 6.02801 6.05089 6.15379 6.22375 6.77990 6.88893 7.01777 7.40593 7.49545 7.88565 8.19864 8.37574 8.86284 9.05054 9.52735 11.00668 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.022854 B = 0.002540 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.881059 B =11019.682282 C =11558.647027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.095 4.095 3 C -0.394 4.394 4 H 0.101 0.899 5 C 0.079 3.921 6 N -0.551 5.551 7 C 0.079 3.921 8 C -0.179 4.179 9 C 0.506 3.494 10 O -0.542 6.542 11 N -0.604 5.604 12 C 0.084 3.916 13 C 0.245 3.755 14 C -0.527 4.527 15 H 0.056 0.944 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.898 3.102 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.078 3.922 23 C -0.400 4.400 24 H 0.118 0.882 25 C -0.133 4.133 26 S 1.227 4.773 27 O -0.847 6.847 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.031 0.969 43 H 0.043 0.957 44 H 0.264 0.736 45 H 0.053 0.947 46 H 0.087 0.913 47 H 0.068 0.932 48 H 0.051 0.949 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.410 -5.238 7.863 23.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.134 4.134 3 C -0.512 4.512 4 H 0.119 0.881 5 C -0.050 4.050 6 N -0.274 5.274 7 C -0.049 4.049 8 C -0.221 4.221 9 C 0.292 3.708 10 O -0.420 6.420 11 N -0.336 5.336 12 C -0.060 4.060 13 C 0.126 3.874 14 C -0.566 4.566 15 H 0.074 0.926 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.726 3.274 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.051 4.051 23 C -0.518 4.518 24 H 0.136 0.864 25 C -0.191 4.191 26 S 1.426 4.574 27 O -0.842 6.842 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.049 0.951 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.105 0.895 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.020 -4.992 7.653 23.840 hybrid contribution 0.618 1.623 -0.750 1.891 sum -21.402 -3.369 6.903 22.739 Atomic orbital electron populations 1.22022 0.95402 1.02102 1.03328 1.21162 0.95942 0.92964 1.03299 1.27438 1.01667 1.04713 1.17393 0.88089 1.21779 0.91090 0.89329 1.02788 1.61360 1.23349 1.16699 1.26020 1.21971 0.83370 1.01520 0.98030 1.22415 0.95180 1.02662 1.01800 1.20201 0.86131 0.79920 0.84580 1.90680 1.83955 1.41788 1.25598 1.48190 1.10752 1.48652 1.25987 1.21623 1.01668 0.94741 0.87957 1.19278 0.75147 0.97024 0.95986 1.21379 0.96961 1.12472 1.25781 0.92584 1.24940 0.97412 0.96675 0.95080 1.69921 1.12535 1.38263 1.32660 0.86560 0.78664 0.82949 0.79254 1.20245 1.21151 1.20180 1.21770 0.93331 1.00145 0.89877 1.27430 1.04841 1.15109 1.04410 0.86417 1.21613 0.99666 1.00093 0.97714 1.70407 0.90175 0.95199 1.01628 1.93097 1.26494 1.82844 1.81784 0.91191 0.92742 0.92199 0.90755 0.90861 0.89564 0.92869 0.89579 0.89507 0.89366 0.89440 0.93797 0.90821 0.92535 0.95080 0.93875 0.92627 0.92876 0.89464 0.91294 0.92974 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 9.63 37.16 0.36 -1.05 16 2 C -0.09 -0.63 5.42 -26.73 -0.14 -0.77 16 3 C -0.39 -3.06 2.38 -26.61 -0.06 -3.12 16 4 H 0.10 1.00 7.53 -51.93 -0.39 0.61 16 5 C 0.08 0.59 3.74 -3.94 -0.01 0.58 16 6 N -0.55 -5.13 3.76 -235.04 -0.88 -6.01 16 7 C 0.08 0.94 4.52 -3.82 -0.02 0.92 16 8 C -0.18 -2.17 3.67 -27.88 -0.10 -2.27 16 9 C 0.51 9.63 7.67 -10.98 -0.08 9.55 16 10 O -0.54 -12.91 15.56 5.56 0.09 -12.82 16 11 N -0.60 -12.03 2.86 -182.96 -0.52 -12.56 16 12 C 0.08 1.20 10.24 59.85 0.61 1.81 16 13 C 0.24 6.24 5.16 -5.19 -0.03 6.22 16 14 C -0.53 -14.64 9.39 -34.44 -0.32 -14.97 16 15 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 18 Si 0.90 21.52 29.54 -169.99 -5.02 16.49 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.08 0.62 4.15 -3.93 -0.02 0.60 16 23 C -0.40 -3.23 3.46 -26.60 -0.09 -3.32 16 24 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 25 C -0.13 -1.36 8.84 37.16 0.33 -1.03 16 26 S 1.23 9.59 12.27 -107.50 -1.32 8.27 16 27 O -0.85 -11.24 15.90 -35.23 -0.56 -11.80 16 28 H 0.07 0.69 5.87 -51.93 -0.30 0.38 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.69 7.91 -51.93 -0.41 0.28 16 34 H 0.05 0.29 7.11 -51.93 -0.37 -0.08 16 35 H 0.09 1.14 8.03 -51.93 -0.42 0.72 16 36 H 0.09 1.19 7.89 -51.93 -0.41 0.78 16 37 H 0.09 0.92 6.23 -51.93 -0.32 0.60 16 38 H 0.09 0.86 6.79 -51.93 -0.35 0.50 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 41 H 0.06 0.61 6.44 -51.93 -0.33 0.28 16 42 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 43 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.05 0.31 7.16 -51.93 -0.37 -0.07 16 46 H 0.09 0.76 7.82 -51.93 -0.41 0.36 16 47 H 0.07 0.76 6.67 -51.93 -0.35 0.42 16 48 H 0.05 0.59 8.02 -51.93 -0.42 0.17 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 388.37 15.07 5.85 5.85 Total: -1.00 -36.42 388.37 -9.90 -46.32 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -8.58 Total: -2.95 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 0.32 Total: -5.23 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: -0.67 Total: -44.13 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.47 Total: -24.62 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 9.59 SS G_CDS: -1.32 Total: 8.27 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.42 -9.90 -46.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352890884.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.127 kcal (2) G-P(sol) polarization free energy of solvation -36.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds