Wall clock time and date at job start Tue Mar 31 2020 05:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.08999 * 109.63626 * 304.60557 * 3 2 1 5 5 C 1.53249 * 109.62986 * 184.01036 * 3 2 1 6 6 N 1.46464 * 109.86393 * 178.29158 * 5 3 2 7 7 C 1.46901 * 111.00308 * 197.76671 * 6 5 3 8 8 C 1.53006 * 109.46898 * 167.97109 * 7 6 5 9 9 C 1.50701 * 109.46957 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00076 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00072 * 180.02562 * 9 8 7 12 12 C 1.46504 * 120.00072 * 359.97438 * 11 9 8 13 13 C 1.46500 * 119.99983 * 180.02562 * 11 9 8 14 14 C 1.50703 * 109.47527 * 90.00113 * 13 11 9 15 15 H 1.08000 * 119.99554 * 359.97438 * 14 13 11 16 16 C 1.37876 * 120.00306 * 180.02562 * 14 13 11 17 17 N 1.31513 * 119.99624 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99947 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47485 * 89.99648 * 18 16 14 20 20 H 1.48507 * 109.46781 * 209.99570 * 18 16 14 21 21 H 1.48500 * 109.47163 * 329.99164 * 18 16 14 22 22 C 1.46469 * 112.55783 * 72.65765 * 6 5 3 23 23 C 1.53243 * 109.86256 * 287.34529 * 22 6 5 24 24 H 1.09000 * 109.79505 * 302.20177 * 23 22 6 25 25 C 1.52998 * 109.63623 * 181.70618 * 23 22 6 26 26 S 1.81898 * 109.63170 * 65.00464 * 3 2 1 27 27 O 1.42096 * 109.47329 * 55.16237 * 26 3 2 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 31 31 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 32 32 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 33 33 H 1.09000 * 109.41278 * 298.41550 * 5 3 2 34 34 H 1.09008 * 109.40271 * 58.17651 * 5 3 2 35 35 H 1.08993 * 109.47237 * 287.97480 * 7 6 5 36 36 H 1.09002 * 109.46833 * 47.97587 * 7 6 5 37 37 H 1.08993 * 109.47480 * 300.00223 * 8 7 6 38 38 H 1.09002 * 109.46988 * 60.00573 * 8 7 6 39 39 H 1.09000 * 109.46732 * 90.00277 * 12 11 9 40 40 H 1.08995 * 109.47146 * 210.00081 * 12 11 9 41 41 H 1.08994 * 109.47178 * 330.00784 * 12 11 9 42 42 H 1.09006 * 109.46891 * 209.99819 * 13 11 9 43 43 H 1.08996 * 109.47387 * 329.99465 * 13 11 9 44 44 H 0.97006 * 119.99923 * 180.02562 * 17 16 14 45 45 H 1.09002 * 109.40880 * 167.22292 * 22 6 5 46 46 H 1.09003 * 109.40524 * 47.46681 * 22 6 5 47 47 H 1.09010 * 109.47002 * 300.98822 * 25 23 22 48 48 H 1.09002 * 109.46986 * 60.98506 * 25 23 22 49 49 H 1.08994 * 109.47528 * 180.99059 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6123 1.9822 -0.8450 5 6 3.5691 1.4481 -0.1009 6 7 4.0601 2.8273 -0.1423 7 6 5.4365 2.8812 -0.6529 8 6 5.8083 4.3322 -0.9648 9 6 7.2205 4.3875 -1.4880 10 8 7.8658 3.3668 -1.6008 11 7 7.7664 5.5711 -1.8305 12 6 6.9867 6.8040 -1.6948 13 6 9.1390 5.6248 -2.3397 14 6 9.1243 5.4834 -3.8400 15 1 8.1863 5.3650 -4.3620 16 6 10.3084 5.5042 -4.5461 17 7 11.4506 5.6479 -3.9103 18 14 10.2901 5.3283 -6.4057 19 1 10.1829 6.6718 -7.0290 20 1 11.5457 4.6737 -6.8533 21 1 9.1272 4.4994 -6.8131 22 6 3.9545 3.5005 1.1542 23 6 2.4870 3.8227 1.4556 24 1 2.0746 4.4439 0.6606 25 6 2.3869 4.5633 2.7907 26 16 1.5611 2.2600 1.5528 27 8 2.0333 1.4973 2.6548 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.9912 0.9393 0.7657 34 1 3.8739 0.9277 -1.0090 35 1 6.1187 2.4848 0.0990 36 1 5.5105 2.2838 -1.5617 37 1 5.1261 4.7286 -1.7167 38 1 5.7343 4.9296 -0.0561 39 1 7.1438 7.2257 -0.7021 40 1 7.3079 7.5219 -2.4495 41 1 5.9285 6.5817 -1.8318 42 1 9.5898 6.5797 -2.0691 43 1 9.7203 4.8122 -1.9038 44 1 12.2837 5.6629 -4.4071 45 1 4.5309 4.4254 1.1301 46 1 4.3499 2.8491 1.9337 47 1 2.8063 3.9427 3.5828 48 1 2.9426 5.4990 2.7296 49 1 1.3408 4.7756 3.0110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352890885.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:03 Heat of formation + Delta-G solvation = -76.153545 kcal Electronic energy + Delta-G solvation = -26954.246250 eV Core-core repulsion = 23235.816164 eV Total energy + Delta-G solvation = -3718.430086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.38297 -38.34680 -35.88100 -35.46722 -34.84972 -33.63260 -32.64635 -31.28759 -28.82114 -27.69953 -26.64040 -25.70907 -23.92398 -22.90251 -22.02511 -21.49522 -20.78341 -18.40991 -18.01373 -16.72376 -16.56520 -16.49871 -15.93258 -15.73721 -15.47494 -14.89887 -14.78910 -14.46540 -14.14928 -14.04723 -13.99873 -13.55205 -13.27867 -12.91534 -12.68846 -12.55697 -12.40246 -12.31552 -12.21208 -12.17453 -11.98432 -11.81872 -11.64828 -11.42086 -11.40155 -11.29058 -11.19430 -11.12119 -10.93079 -10.76850 -10.56758 -10.16871 -9.86558 -9.64008 -8.92748 -8.67964 -8.44869 -8.30424 -7.65899 -6.05441 -4.10316 1.33691 2.29597 3.28868 3.31555 3.35500 3.38868 3.44083 3.63320 4.06854 4.35658 4.43802 4.44993 4.60059 4.74258 4.80829 4.82540 4.92769 5.08844 5.11943 5.15749 5.24110 5.27836 5.30539 5.33884 5.36645 5.48399 5.51290 5.56341 5.63530 5.65033 5.70086 5.77154 5.81057 5.84252 5.90186 5.90997 6.02648 6.05483 6.20508 6.76570 6.83835 7.04250 7.42827 7.52657 7.90855 8.22225 8.40227 8.88827 9.07798 9.54802 11.02708 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.020500 B = 0.002471 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.521194 B =11329.951146 C =12124.603469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.103 4.103 3 C -0.394 4.394 4 H 0.133 0.867 5 C 0.064 3.936 6 N -0.551 5.551 7 C 0.077 3.923 8 C -0.135 4.135 9 C 0.504 3.496 10 O -0.546 6.546 11 N -0.603 5.603 12 C 0.084 3.916 13 C 0.244 3.756 14 C -0.526 4.526 15 H 0.057 0.943 16 C 0.060 3.940 17 N -0.895 5.895 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.057 3.943 23 C -0.400 4.400 24 H 0.132 0.868 25 C -0.131 4.131 26 S 1.231 4.769 27 O -0.846 6.846 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.032 0.968 43 H 0.043 0.957 44 H 0.263 0.737 45 H 0.087 0.913 46 H 0.038 0.962 47 H 0.058 0.942 48 H 0.068 0.932 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.785 -2.569 10.414 28.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.142 4.142 3 C -0.512 4.512 4 H 0.151 0.849 5 C -0.065 4.065 6 N -0.275 5.275 7 C -0.050 4.050 8 C -0.176 4.176 9 C 0.290 3.710 10 O -0.424 6.424 11 N -0.335 5.335 12 C -0.061 4.061 13 C 0.125 3.875 14 C -0.565 4.565 15 H 0.075 0.925 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.072 4.072 23 C -0.518 4.518 24 H 0.150 0.850 25 C -0.189 4.189 26 S 1.429 4.571 27 O -0.841 6.841 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.103 0.897 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.106 0.894 46 H 0.056 0.944 47 H 0.077 0.923 48 H 0.087 0.913 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -27.092 -3.170 10.741 29.316 hybrid contribution 2.893 -0.594 -0.797 3.059 sum -24.200 -3.765 9.944 26.433 Atomic orbital electron populations 1.21873 0.94940 1.02599 1.02124 1.21219 0.96255 0.93478 1.03255 1.27479 1.00924 1.05238 1.17530 0.84927 1.21979 0.92861 0.89088 1.02559 1.61146 1.23661 1.16514 1.26201 1.21771 0.85958 0.96668 1.00583 1.21677 0.95614 0.97796 1.02472 1.20273 0.88075 0.83939 0.78706 1.90670 1.63456 1.33445 1.54814 1.48161 1.17011 1.05423 1.62899 1.21638 0.95362 0.88130 1.00921 1.19290 0.75958 0.98099 0.94142 1.21428 0.92981 1.50237 0.91807 0.92472 1.24950 0.95287 0.95092 0.98872 1.69937 0.97619 1.50070 1.35810 0.86483 0.77598 0.78139 0.85124 1.20614 1.21080 1.19877 1.22106 0.95184 1.00237 0.89650 1.27430 1.05043 1.15579 1.03763 0.84988 1.21452 1.02621 1.00592 0.94262 1.70326 1.14641 0.88021 0.84095 1.93109 1.81074 1.66865 1.43058 0.91936 0.92703 0.91520 0.91567 0.90828 0.94350 0.89657 0.93859 0.89472 0.88498 0.89810 0.93875 0.90773 0.92301 0.95039 0.93916 0.92709 0.89425 0.94385 0.92268 0.91326 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 9.74 37.16 0.36 -0.46 16 2 C -0.10 -0.79 5.40 -26.73 -0.14 -0.93 16 3 C -0.39 -3.15 2.76 -26.60 -0.07 -3.23 16 4 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 5 C 0.06 0.71 4.71 -3.93 -0.02 0.69 16 6 N -0.55 -6.47 4.40 -235.04 -1.03 -7.50 16 7 C 0.08 1.13 4.26 -3.82 -0.02 1.11 16 8 C -0.14 -1.99 4.22 -27.88 -0.12 -2.11 16 9 C 0.50 10.53 7.67 -10.99 -0.08 10.45 16 10 O -0.55 -13.90 15.56 5.56 0.09 -13.81 16 11 N -0.60 -12.91 2.86 -182.95 -0.52 -13.44 16 12 C 0.08 1.31 10.24 59.85 0.61 1.93 16 13 C 0.24 6.50 5.16 -5.19 -0.03 6.47 16 14 C -0.53 -15.08 9.39 -34.44 -0.32 -15.40 16 15 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 18 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 C 0.06 0.63 4.58 -3.93 -0.02 0.61 16 23 C -0.40 -3.16 3.32 -26.61 -0.09 -3.25 16 24 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 25 C -0.13 -0.95 9.19 37.16 0.34 -0.61 16 26 S 1.23 9.67 11.44 -107.50 -1.23 8.44 16 27 O -0.85 -11.79 17.91 -35.23 -0.63 -12.42 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.24 7.15 -51.93 -0.37 -0.13 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.63 8.00 -51.93 -0.42 0.22 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.04 0.51 7.91 -51.93 -0.41 0.10 16 34 H 0.09 0.95 7.73 -51.92 -0.40 0.55 16 35 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 36 H 0.09 1.37 7.74 -51.93 -0.40 0.97 16 37 H 0.10 1.29 7.40 -51.93 -0.38 0.91 16 38 H 0.08 1.07 6.22 -51.93 -0.32 0.74 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 41 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 42 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 43 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.09 0.94 5.89 -51.93 -0.31 0.63 16 46 H 0.04 0.51 7.92 -51.93 -0.41 0.10 16 47 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 48 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 395.85 15.07 5.97 5.97 Total: -1.00 -37.97 395.85 -10.09 -48.06 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -8.75 Total: -3.03 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 0.31 Total: -3.09 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.82 Total: -47.11 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.54 Total: -26.23 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 9.67 SS G_CDS: -1.23 Total: 8.44 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.97 -10.09 -48.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352890885.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.093 kcal (2) G-P(sol) polarization free energy of solvation -37.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds