Wall clock time and date at job start Tue Mar 31 2020 05:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47278 * 2 1 4 4 H 1.08996 * 109.62868 * 304.61055 * 3 2 1 5 5 C 1.53253 * 109.79469 * 184.11241 * 3 2 1 6 6 N 1.46468 * 109.85597 * 178.19682 * 5 3 2 7 7 C 1.46904 * 110.99741 * 197.76674 * 6 5 3 8 8 C 1.53001 * 109.47206 * 300.06400 * 7 6 5 9 9 C 1.50699 * 109.47045 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00406 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99563 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00229 * 0.02562 * 11 9 8 13 13 C 1.46499 * 119.99546 * 180.02562 * 11 9 8 14 14 C 1.50703 * 109.47349 * 270.00192 * 13 11 9 15 15 H 1.08007 * 119.99972 * 0.02562 * 14 13 11 16 16 C 1.37872 * 120.00296 * 180.02562 * 14 13 11 17 17 N 1.31512 * 120.00149 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00169 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47250 * 89.99298 * 18 16 14 20 20 H 1.48490 * 109.47435 * 209.99746 * 18 16 14 21 21 H 1.48498 * 109.47118 * 330.00059 * 18 16 14 22 22 C 1.46469 * 112.56426 * 72.65635 * 6 5 3 23 23 C 1.53240 * 109.85859 * 287.34393 * 22 6 5 24 24 H 1.09004 * 109.63596 * 302.28946 * 23 22 6 25 25 C 1.53001 * 109.63166 * 181.90141 * 23 22 6 26 26 S 1.81897 * 108.50906 * 62.00002 * 23 22 6 27 27 O 1.42101 * 109.47483 * 192.84968 * 26 23 22 28 28 H 1.08996 * 109.46927 * 59.99855 * 1 2 3 29 29 H 1.09000 * 109.46656 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46716 * 300.00226 * 1 2 3 31 31 H 1.09006 * 109.47326 * 240.00221 * 2 1 3 32 32 H 1.09005 * 109.47597 * 119.99693 * 2 1 3 33 33 H 1.08993 * 109.40395 * 58.08235 * 5 3 2 34 34 H 1.08995 * 109.40446 * 298.31280 * 5 3 2 35 35 H 1.09004 * 109.47048 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.47315 * 60.06631 * 7 6 5 37 37 H 1.09004 * 109.47016 * 60.00104 * 8 7 6 38 38 H 1.09002 * 109.47172 * 300.00318 * 8 7 6 39 39 H 1.09002 * 109.47391 * 89.99442 * 12 11 9 40 40 H 1.09001 * 109.46813 * 329.99499 * 12 11 9 41 41 H 1.09004 * 109.47041 * 209.99626 * 12 11 9 42 42 H 1.08993 * 109.47560 * 30.00104 * 13 11 9 43 43 H 1.09000 * 109.47209 * 150.00790 * 13 11 9 44 44 H 0.96993 * 120.00222 * 180.02562 * 17 16 14 45 45 H 1.09010 * 109.40119 * 47.45994 * 22 6 5 46 46 H 1.09002 * 109.40946 * 167.21855 * 22 6 5 47 47 H 1.08999 * 109.47240 * 59.99777 * 25 23 22 48 48 H 1.09001 * 109.47725 * 180.02562 * 25 23 22 49 49 H 1.09004 * 109.47063 * 300.00296 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6123 1.9821 -0.8449 5 6 3.5690 1.4523 -0.1034 6 7 4.0559 2.8331 -0.1468 7 6 5.4313 2.8904 -0.6596 8 6 6.3497 2.0734 0.2513 9 6 7.7606 2.1317 -0.2752 10 8 8.0073 2.7648 -1.2797 11 7 8.7483 1.4811 0.3710 12 6 8.4504 0.7168 1.5848 13 6 10.1199 1.5383 -0.1405 14 6 10.3445 0.4018 -1.1043 15 1 9.5453 -0.2934 -1.3151 16 6 11.5702 0.2493 -1.7170 17 7 12.5433 1.0961 -1.4608 18 14 11.8483 -1.1591 -2.9122 19 1 11.4945 -0.7197 -4.2860 20 1 13.2760 -1.5655 -2.8748 21 1 10.9952 -2.3116 -2.5262 22 6 3.9504 3.5072 1.1493 23 6 2.4824 3.8253 1.4527 24 1 2.0691 4.4431 0.6554 25 6 2.3827 4.5711 2.7849 26 16 1.5611 2.2601 1.5528 27 8 0.1660 2.5295 1.5354 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8739 0.9322 -1.0114 34 1 3.9939 0.9456 0.7630 35 1 5.7682 3.9269 -0.6809 36 1 5.4604 2.4788 -1.6685 37 1 6.0126 1.0370 0.2719 38 1 6.3206 2.4851 1.2602 39 1 8.1987 -0.3090 1.3156 40 1 7.6078 1.1735 2.1040 41 1 9.3232 0.7174 2.2379 42 1 10.2769 2.4867 -0.6543 43 1 10.8212 1.4544 0.6898 44 1 13.4054 0.9891 -1.8921 45 1 4.3488 2.8576 1.9288 46 1 4.5240 4.4337 1.1234 47 1 2.9494 5.5003 2.7243 48 1 1.3377 4.7957 2.9984 49 1 2.7902 3.9484 3.5813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352890887.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:06 Heat of formation + Delta-G solvation = -76.597109 kcal Electronic energy + Delta-G solvation = -27114.827075 eV Core-core repulsion = 23396.377754 eV Total energy + Delta-G solvation = -3718.449320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.57876 -38.34585 -35.99670 -35.34503 -34.88408 -33.77534 -32.64847 -30.83974 -28.96799 -27.75030 -26.44425 -25.67324 -24.22057 -22.94841 -22.41590 -21.50727 -20.63083 -18.49921 -17.65582 -16.67596 -16.59376 -16.42403 -16.05782 -16.01492 -15.40879 -14.92310 -14.76683 -14.59849 -14.21957 -14.09658 -13.71361 -13.47107 -13.32599 -12.81789 -12.74219 -12.58691 -12.51677 -12.30463 -12.26660 -12.13875 -12.04308 -11.87251 -11.81230 -11.59365 -11.32598 -11.26681 -11.22856 -10.97439 -10.89781 -10.76857 -10.60378 -10.18461 -9.75344 -9.66762 -9.01536 -8.54092 -8.46343 -8.45072 -7.69057 -6.07352 -4.12199 1.28674 2.28286 3.28915 3.33148 3.35504 3.40174 3.45299 3.54720 3.95841 4.36098 4.42028 4.52955 4.61226 4.72025 4.77542 4.84166 4.96915 5.05117 5.08040 5.10798 5.16313 5.23913 5.27799 5.34684 5.41801 5.46306 5.49564 5.55734 5.59746 5.67353 5.70141 5.71834 5.75131 5.83784 5.87818 5.94511 6.03919 6.12780 6.21237 6.76615 6.87264 7.01071 7.39970 7.49831 7.88635 8.20020 8.36715 8.86492 9.04664 9.53050 11.00815 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019300 B = 0.002621 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.443835 B =10679.700934 C =11496.009191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.095 4.095 3 C -0.394 4.394 4 H 0.099 0.901 5 C 0.078 3.922 6 N -0.556 5.556 7 C 0.078 3.922 8 C -0.179 4.179 9 C 0.506 3.494 10 O -0.542 6.542 11 N -0.604 5.604 12 C 0.086 3.914 13 C 0.245 3.755 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.898 3.102 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.079 3.921 23 C -0.400 4.400 24 H 0.098 0.902 25 C -0.127 4.127 26 S 1.226 4.774 27 O -0.849 6.849 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.043 0.957 43 H 0.031 0.969 44 H 0.263 0.737 45 H 0.053 0.947 46 H 0.086 0.914 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.315 -0.242 11.885 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.134 4.134 3 C -0.513 4.513 4 H 0.118 0.882 5 C -0.050 4.050 6 N -0.278 5.278 7 C -0.049 4.049 8 C -0.221 4.221 9 C 0.292 3.708 10 O -0.420 6.420 11 N -0.336 5.336 12 C -0.058 4.058 13 C 0.125 3.875 14 C -0.565 4.565 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.726 3.274 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.050 4.050 23 C -0.519 4.519 24 H 0.117 0.883 25 C -0.185 4.185 26 S 1.426 4.574 27 O -0.844 6.844 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.105 0.895 47 H 0.087 0.913 48 H 0.079 0.921 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.909 0.071 11.714 23.966 hybrid contribution 0.240 -0.031 -2.039 2.053 sum -20.669 0.041 9.675 22.821 Atomic orbital electron populations 1.22035 0.95375 1.02177 1.03339 1.21170 0.95949 0.92881 1.03442 1.27435 1.01763 1.04886 1.17220 0.88213 1.21782 0.91058 0.89240 1.02957 1.61373 1.22995 1.16696 1.26778 1.21978 0.83227 1.01418 0.98296 1.22419 0.95189 1.02903 1.01564 1.20181 0.86256 0.80035 0.84320 1.90682 1.83540 1.42847 1.24938 1.48185 1.10877 1.48622 1.25901 1.21614 1.00867 0.95885 0.87437 1.19301 0.75118 0.98519 0.94520 1.21416 0.97505 1.11980 1.25592 0.92536 1.24938 0.95887 0.96574 0.96731 1.69925 1.03524 1.36481 1.43489 0.86500 0.77237 0.82163 0.81526 1.20540 1.21126 1.19931 1.21799 0.93282 1.00048 0.89870 1.27365 1.05406 1.15686 1.03403 0.88324 1.21413 1.02533 1.00639 0.93947 1.70455 0.89734 0.95158 1.02082 1.93097 1.26266 1.82958 1.82075 0.92730 0.92106 0.91177 0.90647 0.90759 0.89427 0.92765 0.89572 0.89428 0.89270 0.89475 0.93244 0.92670 0.91423 0.93885 0.95057 0.92689 0.92870 0.89545 0.91253 0.92127 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.60 37.16 0.36 -1.14 16 2 C -0.10 -0.69 5.43 -26.73 -0.15 -0.84 16 3 C -0.39 -3.32 2.75 -26.60 -0.07 -3.39 16 4 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 5 C 0.08 0.64 3.75 -3.93 -0.01 0.63 16 6 N -0.56 -5.42 4.59 -235.03 -1.08 -6.50 16 7 C 0.08 0.96 4.52 -3.82 -0.02 0.94 16 8 C -0.18 -2.20 3.67 -27.88 -0.10 -2.30 16 9 C 0.51 9.67 7.67 -10.98 -0.08 9.58 16 10 O -0.54 -12.92 15.56 5.56 0.09 -12.84 16 11 N -0.60 -12.05 2.86 -182.95 -0.52 -12.57 16 12 C 0.09 1.23 10.29 59.85 0.62 1.84 16 13 C 0.24 6.24 5.20 -5.19 -0.03 6.21 16 14 C -0.53 -14.67 9.39 -34.44 -0.32 -14.99 16 15 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 18 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 22 C 0.08 0.62 3.97 -3.93 -0.02 0.61 16 23 C -0.40 -3.26 3.31 -26.61 -0.09 -3.35 16 24 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 25 C -0.13 -0.83 9.24 37.16 0.34 -0.49 16 26 S 1.23 10.01 12.12 -107.50 -1.30 8.71 16 27 O -0.85 -11.59 16.16 -35.23 -0.57 -12.16 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.71 5.82 -51.93 -0.30 0.41 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.78 7.91 -51.93 -0.41 0.37 16 34 H 0.05 0.33 7.10 -51.93 -0.37 -0.04 16 35 H 0.09 1.14 7.89 -51.93 -0.41 0.73 16 36 H 0.09 1.22 8.03 -51.93 -0.42 0.81 16 37 H 0.09 0.95 6.79 -51.93 -0.35 0.60 16 38 H 0.09 0.85 6.23 -51.93 -0.32 0.53 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.56 6.44 -51.93 -0.33 0.23 16 41 H 0.07 0.94 7.89 -51.93 -0.41 0.53 16 42 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 43 H 0.03 0.81 7.89 -51.93 -0.41 0.40 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.05 0.30 7.17 -51.92 -0.37 -0.07 16 46 H 0.09 0.71 7.82 -51.93 -0.41 0.31 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 391.61 15.07 5.90 5.90 Total: -1.00 -36.77 391.61 -10.12 -46.89 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -8.67 Total: -3.31 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 0.33 Total: -5.07 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: -0.86 Total: -44.67 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.48 Total: -25.00 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 10.01 SS G_CDS: -1.30 Total: 8.71 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.77 -10.12 -46.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352890887.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.707 kcal (2) G-P(sol) polarization free energy of solvation -36.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds