Wall clock time and date at job start Tue Mar 31 2020 05:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47152 * 2 1 4 4 H 1.09000 * 109.62531 * 305.38831 * 3 2 1 5 5 C 1.53242 * 109.62792 * 185.00076 * 3 2 1 6 6 N 1.46477 * 109.85950 * 178.28835 * 5 3 2 7 7 C 1.46893 * 111.00234 * 197.76519 * 6 5 3 8 8 C 1.53002 * 109.47257 * 170.00137 * 7 6 5 9 9 C 1.50695 * 109.47004 * 180.02562 * 8 7 6 10 10 O 1.21274 * 120.00413 * 0.27039 * 9 8 7 11 11 N 1.34784 * 119.99635 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99893 * 0.02562 * 11 9 8 13 13 C 1.46499 * 119.99971 * 179.97438 * 11 9 8 14 14 C 1.50703 * 109.47219 * 89.99688 * 13 11 9 15 15 H 1.07996 * 119.99587 * 359.97438 * 14 13 11 16 16 C 1.37875 * 120.00012 * 180.02562 * 14 13 11 17 17 N 1.31516 * 119.99655 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99994 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.46889 * 90.00281 * 18 16 14 20 20 H 1.48510 * 109.46825 * 210.00042 * 18 16 14 21 21 H 1.48494 * 109.47200 * 329.99914 * 18 16 14 22 22 C 1.46470 * 112.55595 * 72.65507 * 6 5 3 23 23 C 1.53251 * 109.85822 * 287.34608 * 22 6 5 24 24 H 1.08998 * 109.79182 * 181.80388 * 23 22 6 25 25 C 1.53003 * 109.63042 * 302.29663 * 23 22 6 26 26 S 1.81895 * 108.50689 * 62.00665 * 23 22 6 27 27 O 1.42096 * 109.47415 * 64.53403 * 26 23 22 28 28 H 1.09005 * 109.47148 * 60.00131 * 1 2 3 29 29 H 1.08994 * 109.47044 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47450 * 300.00433 * 1 2 3 31 31 H 1.08993 * 109.47126 * 239.99715 * 2 1 3 32 32 H 1.09003 * 109.46734 * 119.99557 * 2 1 3 33 33 H 1.08997 * 109.41107 * 58.17158 * 5 3 2 34 34 H 1.08998 * 109.40736 * 298.40882 * 5 3 2 35 35 H 1.08997 * 109.47405 * 49.99731 * 7 6 5 36 36 H 1.09002 * 109.47321 * 289.99931 * 7 6 5 37 37 H 1.09005 * 109.47089 * 59.99779 * 8 7 6 38 38 H 1.09002 * 109.46787 * 300.00121 * 8 7 6 39 39 H 1.08996 * 109.47008 * 90.00348 * 12 11 9 40 40 H 1.08997 * 109.46865 * 210.00034 * 12 11 9 41 41 H 1.08998 * 109.47058 * 329.99547 * 12 11 9 42 42 H 1.08998 * 109.47416 * 209.99869 * 13 11 9 43 43 H 1.09008 * 109.47058 * 330.00468 * 13 11 9 44 44 H 0.97008 * 119.99482 * 180.02562 * 17 16 14 45 45 H 1.08999 * 109.40453 * 47.46192 * 22 6 5 46 46 H 1.08997 * 109.40527 * 167.22820 * 22 6 5 47 47 H 1.09000 * 109.46727 * 179.02007 * 25 23 22 48 48 H 1.08999 * 109.47251 * 299.01617 * 25 23 22 49 49 H 1.08992 * 109.46954 * 59.01789 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6015 1.9859 -0.8370 5 6 3.5673 1.4486 -0.1258 6 7 4.0577 2.8282 -0.1673 7 6 5.4255 2.8849 -0.6999 8 6 5.8108 4.3422 -0.9621 9 6 7.2138 4.4002 -1.5090 10 8 7.8418 3.3766 -1.6776 11 7 7.7685 5.5896 -1.8164 12 6 7.0077 6.8257 -1.6183 13 6 9.1326 5.6461 -2.3476 14 6 9.0900 5.5618 -3.8516 15 1 8.1416 5.4744 -4.3608 16 6 10.2617 5.5953 -4.5775 17 7 10.2244 5.5222 -5.8901 18 14 11.9022 5.7443 -3.6965 19 1 12.4232 4.3884 -3.3880 20 1 12.8688 6.4596 -4.5680 21 1 11.7187 6.5034 -2.4335 22 6 3.9733 3.4939 1.1346 23 6 2.5108 3.8143 1.4616 24 1 2.4521 4.3381 2.4156 25 6 1.9171 4.6906 0.3567 26 16 1.5864 2.2512 1.5649 27 8 2.0764 1.4822 2.6548 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8573 0.9335 -1.0415 34 1 4.0033 0.9348 0.7309 35 1 5.4761 2.3223 -1.6321 36 1 6.1156 2.4512 0.0239 37 1 5.7602 4.9047 -0.0297 38 1 5.1208 4.7758 -1.6859 39 1 7.1891 7.2068 -0.6133 40 1 7.3239 7.5682 -2.3509 41 1 5.9443 6.6219 -1.7433 42 1 9.6001 6.5845 -2.0494 43 1 9.7111 4.8105 -1.9532 44 1 11.0488 5.5454 -6.4007 45 1 4.3811 2.8381 1.9038 46 1 4.5491 4.4189 1.1063 47 1 0.8721 4.9024 0.5832 48 1 2.4728 5.6264 0.2971 49 1 1.9834 4.1672 -0.5970 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352890889.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:09 Heat of formation + Delta-G solvation = -69.205118 kcal Electronic energy + Delta-G solvation = -27171.067856 eV Core-core repulsion = 23452.939076 eV Total energy + Delta-G solvation = -3718.128779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.50937 -38.48723 -35.96199 -35.34497 -34.97033 -33.50949 -32.57882 -31.27583 -29.08567 -28.12190 -26.58560 -25.84980 -23.88786 -23.07476 -22.01084 -21.56295 -20.47949 -18.43041 -17.88593 -16.99345 -16.89772 -16.16174 -15.98831 -15.71287 -15.61940 -15.04224 -14.92749 -14.30521 -14.24159 -14.08953 -14.02896 -13.75822 -13.31388 -12.83490 -12.67876 -12.64059 -12.40730 -12.33459 -12.25420 -12.09728 -11.98897 -11.88547 -11.70153 -11.62211 -11.47837 -11.36431 -11.21054 -11.09447 -10.97692 -10.79692 -10.53115 -10.16503 -9.86185 -9.56448 -9.05040 -8.68836 -8.60718 -8.30319 -7.73316 -6.10566 -4.09300 1.33407 2.25995 3.26891 3.28424 3.33280 3.34721 3.36339 3.60548 3.96553 4.37876 4.38029 4.42380 4.58122 4.73324 4.76850 4.83821 4.95967 5.06216 5.10768 5.15422 5.20058 5.26851 5.31015 5.34659 5.41271 5.49305 5.52509 5.58413 5.62181 5.65750 5.71122 5.75561 5.80088 5.82557 5.90269 5.99730 6.01475 6.09800 6.14818 6.66793 6.74357 6.82217 6.92251 7.30643 7.59070 8.21503 8.45084 8.90213 8.95837 9.49755 11.02848 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.024110 B = 0.002475 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.079102 B =11312.346058 C =11717.272342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.104 4.104 3 C -0.391 4.391 4 H 0.134 0.866 5 C 0.064 3.936 6 N -0.547 5.547 7 C 0.077 3.923 8 C -0.135 4.135 9 C 0.507 3.493 10 O -0.544 6.544 11 N -0.598 5.598 12 C 0.083 3.917 13 C 0.215 3.785 14 C -0.528 4.528 15 H 0.074 0.926 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.877 3.123 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.266 1.266 22 C 0.055 3.945 23 C -0.399 4.399 24 H 0.112 0.888 25 C -0.116 4.116 26 S 1.230 4.770 27 O -0.851 6.851 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.038 0.962 35 H 0.088 0.912 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.044 0.956 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.029 0.971 43 H 0.035 0.965 44 H 0.265 0.735 45 H 0.037 0.963 46 H 0.088 0.912 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.317 -2.324 14.254 28.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.142 4.142 3 C -0.509 4.509 4 H 0.152 0.848 5 C -0.065 4.065 6 N -0.271 5.271 7 C -0.050 4.050 8 C -0.175 4.175 9 C 0.293 3.707 10 O -0.422 6.422 11 N -0.330 5.330 12 C -0.061 4.061 13 C 0.094 3.906 14 C -0.567 4.567 15 H 0.092 0.908 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.704 3.296 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.191 1.191 22 C -0.073 4.073 23 C -0.517 4.517 24 H 0.130 0.870 25 C -0.174 4.174 26 S 1.428 4.572 27 O -0.846 6.846 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.107 0.893 36 H 0.060 0.940 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.047 0.953 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.055 0.945 46 H 0.106 0.894 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.716 -2.938 14.441 28.776 hybrid contribution 3.752 -0.472 0.618 3.831 sum -20.965 -3.410 15.059 26.037 Atomic orbital electron populations 1.21870 0.94907 1.02578 1.02153 1.21225 0.96297 0.93474 1.03248 1.27476 1.00860 1.05149 1.17452 0.84791 1.21981 0.92854 0.89030 1.02628 1.61124 1.24156 1.16659 1.25153 1.21768 0.86194 0.96380 1.00639 1.21677 0.95413 0.97965 1.02443 1.20307 0.87981 0.83758 0.78650 1.90670 1.63983 1.33416 1.54133 1.47841 1.17062 1.05301 1.62812 1.21666 0.95868 0.87866 1.00653 1.19665 0.78492 0.97129 0.95298 1.21320 0.95204 1.50955 0.89186 0.90763 1.24864 0.98954 0.94486 0.94749 1.69901 1.27975 1.50396 1.05325 0.86843 0.84060 0.78879 0.79856 1.19932 1.21017 1.19111 1.22066 0.95228 1.00309 0.89726 1.27439 1.04359 1.14984 1.04945 0.86969 1.21352 0.99701 0.99024 0.97302 1.70324 1.14956 0.87956 0.83949 1.93104 1.81059 1.66694 1.43750 0.91493 0.91965 0.92709 0.90785 0.91620 0.89573 0.94400 0.89320 0.93969 0.89724 0.88241 0.93787 0.90554 0.91955 0.95263 0.94657 0.92547 0.94494 0.89355 0.92025 0.91974 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 9.75 37.16 0.36 -0.45 16 2 C -0.10 -0.78 5.39 -26.73 -0.14 -0.92 16 3 C -0.39 -3.06 2.39 -26.60 -0.06 -3.13 16 4 H 0.13 0.78 7.58 -51.93 -0.39 0.39 16 5 C 0.06 0.69 4.72 -3.93 -0.02 0.67 16 6 N -0.55 -6.13 3.57 -235.04 -0.84 -6.97 16 7 C 0.08 1.09 4.25 -3.83 -0.02 1.07 16 8 C -0.13 -1.91 4.18 -27.88 -0.12 -2.02 16 9 C 0.51 10.23 7.67 -10.98 -0.08 10.14 16 10 O -0.54 -13.41 15.56 5.56 0.09 -13.33 16 11 N -0.60 -12.30 2.86 -182.96 -0.52 -12.83 16 12 C 0.08 1.25 10.24 59.85 0.61 1.87 16 13 C 0.21 5.31 4.23 -5.19 -0.02 5.29 16 14 C -0.53 -15.28 9.94 -34.44 -0.34 -15.63 16 15 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 16 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 17 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 18 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 19 H -0.27 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 22 C 0.06 0.59 4.77 -3.93 -0.02 0.57 16 23 C -0.40 -3.11 3.47 -26.60 -0.09 -3.20 16 24 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 25 C -0.12 -0.66 8.98 37.16 0.33 -0.33 16 26 S 1.23 9.69 11.50 -107.50 -1.24 8.45 16 27 O -0.85 -12.08 17.94 -35.23 -0.63 -12.72 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.23 7.19 -51.93 -0.37 -0.14 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.62 7.97 -51.93 -0.41 0.21 16 33 H 0.09 0.93 7.76 -51.93 -0.40 0.53 16 34 H 0.04 0.49 7.91 -51.93 -0.41 0.08 16 35 H 0.09 1.36 7.79 -51.93 -0.40 0.96 16 36 H 0.04 0.66 8.10 -51.93 -0.42 0.24 16 37 H 0.08 1.02 6.15 -51.93 -0.32 0.70 16 38 H 0.10 1.28 7.40 -51.93 -0.38 0.90 16 39 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 41 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 42 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 43 H 0.04 0.94 6.85 -51.92 -0.36 0.58 16 44 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 45 H 0.04 0.48 7.91 -51.93 -0.41 0.07 16 46 H 0.09 0.90 5.77 -51.93 -0.30 0.60 16 47 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 48 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.08 0.48 6.69 -51.93 -0.35 0.13 16 LS Contribution 389.15 15.07 5.86 5.86 Total: -1.00 -38.78 389.15 -9.49 -48.27 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -8.61 Total: -2.75 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 0.29 Total: -4.05 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: -0.59 Total: -46.83 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.55 Total: -26.04 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Atomic # 16 Polarization: 9.69 SS G_CDS: -1.24 Total: 8.45 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.78 -9.49 -48.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352890889.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.935 kcal (2) G-P(sol) polarization free energy of solvation -38.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds