Wall clock time and date at job start Tue Mar 31 2020 05:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 119.99758 * 2 1 4 4 H 1.48506 * 109.46923 * 275.38323 * 3 2 1 5 5 H 1.48501 * 109.47253 * 35.38471 * 3 2 1 6 6 H 1.48503 * 109.46912 * 155.38758 * 3 2 1 7 7 C 1.38810 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00272 * 344.30684 * 7 2 1 9 9 N 1.36941 * 120.00119 * 164.30146 * 7 2 1 10 10 C 1.46966 * 120.59419 * 152.39932 * 9 7 2 11 11 C 1.53376 * 108.77384 * 124.84202 * 10 9 7 12 12 N 1.46962 * 108.63435 * 49.33972 * 11 10 9 13 13 C 1.34774 * 120.59000 * 124.79306 * 12 11 10 14 14 O 1.21280 * 120.00386 * 355.78085 * 13 12 11 15 15 C 1.50707 * 119.99874 * 175.77863 * 13 12 11 16 16 O 1.42903 * 109.67294 * 318.31652 * 15 13 12 17 17 C 1.53323 * 109.67360 * 78.82288 * 15 13 12 18 18 C 1.52729 * 108.38584 * 189.55140 * 17 15 13 19 19 C 1.50631 * 110.59960 * 308.90362 * 18 17 15 20 20 C 1.38911 * 117.74529 * 197.49196 * 19 18 17 21 21 C 1.37935 * 120.54173 * 180.54171 * 20 19 18 22 22 C 1.38261 * 119.77031 * 0.02562 * 21 20 19 23 23 C 1.37934 * 119.77654 * 359.87583 * 22 21 20 24 24 C 1.37668 * 122.56701 * 17.82309 * 19 18 17 25 25 C 1.50630 * 122.56185 * 359.25566 * 24 19 18 26 26 C 1.46960 * 118.81450 * 304.77285 * 12 11 10 27 27 C 1.47000 * 120.61692 * 332.16218 * 9 7 2 28 28 H 0.96993 * 120.00669 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.60822 * 5.01933 * 10 9 7 30 30 H 1.08998 * 109.61328 * 244.67267 * 10 9 7 31 31 H 1.09001 * 109.60833 * 169.08709 * 11 10 9 32 32 H 1.08999 * 109.60906 * 289.59725 * 11 10 9 33 33 H 0.96699 * 113.99548 * 304.32201 * 16 15 13 34 34 H 1.09003 * 109.68690 * 309.30495 * 17 15 13 35 35 H 1.08991 * 109.68340 * 69.86703 * 17 15 13 36 36 H 1.09000 * 109.25912 * 188.59905 * 18 17 15 37 37 H 1.08997 * 109.19445 * 69.15691 * 18 17 15 38 38 H 1.07995 * 119.72784 * 0.56320 * 20 19 18 39 39 H 1.07999 * 120.11658 * 180.02562 * 21 20 19 40 40 H 1.08003 * 120.11578 * 179.89418 * 22 21 20 41 41 H 1.07999 * 119.73004 * 180.02562 * 23 22 21 42 42 H 1.09004 * 109.25295 * 257.43738 * 25 24 19 43 43 H 1.09000 * 109.21900 * 137.99682 * 25 24 19 44 44 H 1.08998 * 109.61224 * 174.97220 * 26 12 11 45 45 H 1.09000 * 109.60813 * 295.48197 * 26 12 11 46 46 H 1.09005 * 109.46428 * 115.40953 * 27 9 7 47 47 H 1.08997 * 109.75431 * 355.07713 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3838 2.1121 -1.3940 5 1 1.5090 2.6172 0.8107 6 1 3.5999 1.4100 0.5831 7 6 2.0102 -1.2021 -0.0005 8 1 1.5005 -2.1202 0.2520 9 7 3.3413 -1.2240 -0.3214 10 6 4.2239 -2.2677 0.2188 11 6 4.9240 -2.9748 -0.9484 12 7 5.4957 -1.9559 -1.8399 13 6 6.8063 -1.9765 -2.1536 14 8 7.5401 -2.7939 -1.6397 15 6 7.3599 -0.9836 -3.1430 16 8 6.4525 -0.8381 -4.2374 17 6 7.5618 0.3721 -2.4559 18 6 7.8918 1.4103 -3.5264 19 6 9.0159 0.9268 -4.4048 20 6 9.6855 1.8690 -5.1753 21 6 10.7166 1.4881 -6.0086 22 6 11.0869 0.1578 -6.0788 23 6 10.4245 -0.7789 -5.3130 24 6 9.3879 -0.3970 -4.4709 25 6 8.7128 -1.4704 -3.6579 26 6 4.6127 -0.9145 -2.3835 27 6 3.9125 -0.2074 -1.2165 28 1 -0.4851 0.8399 0.0004 29 1 3.6337 -2.9899 0.7829 30 1 4.9694 -1.8144 0.8720 31 1 5.7198 -3.6134 -0.5648 32 1 4.2008 -3.5774 -1.4978 33 1 6.2345 -1.6693 -4.6808 34 1 6.6485 0.6592 -1.9347 35 1 8.3851 0.3043 -1.7449 36 1 8.1875 2.3421 -3.0444 37 1 7.0076 1.5871 -4.1388 38 1 9.3968 2.9082 -5.1210 39 1 11.2328 2.2264 -6.6043 40 1 11.8922 -0.1469 -6.7307 41 1 10.7146 -1.8178 -5.3681 42 1 9.3469 -1.7318 -2.8106 43 1 8.5641 -2.3523 -4.2809 44 1 5.2028 -0.1924 -2.9477 45 1 3.8673 -1.3705 -3.0351 46 1 4.6357 0.3953 -0.6669 47 1 3.1187 0.4335 -1.6002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375061250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:18 Heat of formation + Delta-G solvation = -19.823172 kcal Electronic energy + Delta-G solvation = -29662.745661 eV Core-core repulsion = 25811.314293 eV Total energy + Delta-G solvation = -3851.431369 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.08278 -39.49893 -37.47507 -36.96200 -34.41855 -33.93116 -32.55680 -31.59540 -30.92026 -30.02025 -28.92067 -27.29976 -24.74072 -23.57312 -23.30616 -22.84368 -22.31788 -20.97395 -19.77389 -19.21710 -17.88510 -16.62664 -16.46364 -16.25475 -15.93974 -15.40616 -15.11813 -15.00139 -14.69627 -14.58977 -14.28541 -14.12380 -14.07533 -13.73045 -13.25994 -13.14730 -12.86477 -12.72530 -12.54607 -12.36607 -12.12547 -12.06503 -12.00104 -11.73979 -11.54261 -11.25142 -11.11389 -10.97675 -10.89946 -10.48593 -10.33399 -10.17146 -10.02507 -9.53605 -9.22594 -8.93508 -8.90083 -8.65632 -8.38062 -7.01968 -6.00521 -3.41141 1.21632 1.23518 2.59730 3.11014 3.23254 3.41169 3.43262 3.59660 3.90639 4.28884 4.43506 4.45045 4.60942 4.75943 4.80142 4.81353 4.87136 4.91134 5.07048 5.25171 5.27794 5.34307 5.43765 5.52847 5.56779 5.60191 5.66024 5.71960 5.74865 5.81803 5.85499 5.89267 5.96380 6.00279 6.04663 6.08863 6.22831 6.33129 6.34357 6.35323 6.48384 6.52320 6.66611 6.81417 6.86594 7.29123 7.65725 7.85669 8.24545 8.26200 8.83173 9.62530 9.98345 11.15309 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019458 B = 0.003605 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.621485 B = 7765.443625 C = 8777.771497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.022 3.978 3 Si 0.886 3.114 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.268 1.268 7 C -0.262 4.262 8 H 0.088 0.912 9 N -0.606 5.606 10 C 0.137 3.863 11 C 0.090 3.910 12 N -0.585 5.585 13 C 0.486 3.514 14 O -0.550 6.550 15 C 0.127 3.873 16 O -0.536 6.536 17 C -0.109 4.109 18 C -0.074 4.074 19 C -0.064 4.064 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.120 4.120 24 C -0.067 4.067 25 C -0.090 4.090 26 C 0.077 3.923 27 C 0.110 3.890 28 H 0.263 0.737 29 H 0.076 0.924 30 H 0.028 0.972 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.380 0.620 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.108 0.892 45 H 0.070 0.930 46 H 0.032 0.968 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.903 0.905 -11.662 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.177 4.177 3 Si 0.718 3.282 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.193 1.193 7 C -0.390 4.390 8 H 0.106 0.894 9 N -0.330 5.330 10 C 0.011 3.989 11 C -0.034 4.034 12 N -0.317 5.317 13 C 0.272 3.728 14 O -0.429 6.429 15 C 0.083 3.917 16 O -0.343 6.343 17 C -0.147 4.147 18 C -0.111 4.111 19 C -0.064 4.064 20 C -0.139 4.139 21 C -0.142 4.142 22 C -0.144 4.144 23 C -0.138 4.138 24 C -0.067 4.067 25 C -0.127 4.127 26 C -0.047 4.047 27 C -0.016 4.016 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.228 0.772 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.117 0.883 43 H 0.098 0.902 44 H 0.125 0.875 45 H 0.089 0.911 46 H 0.049 0.951 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 20.115 1.184 -11.179 23.043 hybrid contribution 0.239 0.381 -0.225 0.502 sum 20.353 1.564 -11.404 23.383 Atomic orbital electron populations 1.69771 1.05641 1.26599 1.53372 1.25292 0.95311 0.97674 0.99403 0.86928 0.80025 0.84392 0.76890 1.21555 1.23157 1.19284 1.18956 0.82414 0.94551 1.43103 0.89441 1.44289 1.06459 1.30354 1.51941 1.21281 0.92990 0.91804 0.92870 1.22282 0.97762 0.90558 0.92780 1.48058 1.07623 1.29288 1.46682 1.21216 0.82449 0.85377 0.83724 1.90661 1.57655 1.39925 1.54627 1.21206 0.89033 0.95421 0.85991 1.86569 1.64604 1.36605 1.46495 1.21693 1.03472 0.91826 0.97674 1.20353 0.97001 0.97842 0.95892 1.19606 0.96707 0.92564 0.97506 1.21144 0.96494 0.99251 0.97038 1.21037 0.97757 0.96147 0.99273 1.21013 1.00185 0.93385 0.99821 1.21113 0.96219 0.99600 0.96823 1.19433 0.96355 0.93497 0.97443 1.20892 0.95225 0.96464 1.00133 1.22827 0.93766 0.90822 0.97283 1.21835 0.96752 0.92281 0.90781 0.92655 0.90599 0.95443 0.89669 0.91368 0.77153 0.89707 0.89794 0.90437 0.89161 0.86197 0.86298 0.86296 0.86289 0.88341 0.90162 0.87462 0.91134 0.95062 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.36 13.97 55.49 0.78 -26.59 16 2 C 0.02 0.62 5.33 -17.43 -0.09 0.53 16 3 Si 0.89 21.67 24.31 -169.99 -4.13 17.54 16 4 H -0.29 -6.70 6.75 56.52 0.38 -6.32 16 5 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 6 H -0.27 -6.39 6.02 56.52 0.34 -6.05 16 7 C -0.26 -7.09 10.08 -15.06 -0.15 -7.24 16 8 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 9 N -0.61 -13.89 2.78 -172.00 -0.48 -14.36 16 10 C 0.14 2.66 6.67 -3.59 -0.02 2.63 16 11 C 0.09 1.52 6.60 -3.60 -0.02 1.49 16 12 N -0.59 -9.49 2.95 -172.49 -0.51 -10.00 16 13 C 0.49 7.44 6.61 -10.98 -0.07 7.37 16 14 O -0.55 -9.78 15.23 5.56 0.08 -9.69 16 15 C 0.13 1.56 0.54 -91.74 -0.05 1.51 16 16 O -0.54 -6.03 8.91 -35.23 -0.31 -6.34 16 17 C -0.11 -1.31 4.69 -26.70 -0.13 -1.44 16 18 C -0.07 -0.78 5.28 -28.06 -0.15 -0.93 16 19 C -0.06 -0.70 5.68 -104.61 -0.59 -1.29 16 20 C -0.12 -1.20 9.61 -39.44 -0.38 -1.57 16 21 C -0.12 -1.13 10.05 -39.68 -0.40 -1.53 16 22 C -0.13 -1.15 10.05 -39.68 -0.40 -1.55 16 23 C -0.12 -1.19 9.61 -39.44 -0.38 -1.57 16 24 C -0.07 -0.74 5.62 -104.62 -0.59 -1.33 16 25 C -0.09 -1.02 4.31 -28.06 -0.12 -1.14 16 26 C 0.08 1.27 5.20 -3.60 -0.02 1.25 16 27 C 0.11 2.26 4.29 -3.58 -0.02 2.24 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.08 1.43 7.93 -51.93 -0.41 1.01 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 1.39 6.99 -51.93 -0.36 1.03 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.38 3.35 9.03 45.56 0.41 3.76 16 34 H 0.08 1.11 6.63 -51.93 -0.34 0.76 16 35 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 36 H 0.08 0.71 8.13 -51.93 -0.42 0.29 16 37 H 0.09 0.99 7.73 -51.93 -0.40 0.59 16 38 H 0.12 0.98 8.05 -52.49 -0.42 0.55 16 39 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.12 1.00 8.05 -52.49 -0.42 0.58 16 42 H 0.10 1.21 7.55 -51.93 -0.39 0.82 16 43 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 44 H 0.11 1.56 3.81 -51.93 -0.20 1.37 16 45 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.03 0.65 6.83 -51.93 -0.35 0.30 16 47 H 0.08 1.79 4.13 -51.93 -0.21 1.57 16 LS Contribution 356.23 15.07 5.37 5.37 Total: -1.00 -32.01 356.23 -8.92 -40.93 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.13 Total: 5.71 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -3.58 Total: -2.56 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.21 Total: -50.95 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.23 Total: -16.04 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.13 Total: 17.54 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.01 -8.92 -40.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375061250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.105 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds