Wall clock time and date at job start Tue Mar 31 2020 05:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 119.99758 * 2 1 4 4 H 1.48506 * 109.46923 * 275.38323 * 3 2 1 5 5 H 1.48501 * 109.47253 * 35.38471 * 3 2 1 6 6 H 1.48503 * 109.46912 * 155.38758 * 3 2 1 7 7 C 1.38810 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00272 * 344.30684 * 7 2 1 9 9 N 1.36941 * 120.00119 * 164.30146 * 7 2 1 10 10 C 1.46966 * 120.59419 * 152.39932 * 9 7 2 11 11 C 1.53376 * 108.77384 * 124.84202 * 10 9 7 12 12 N 1.46962 * 108.63435 * 49.33972 * 11 10 9 13 13 C 1.34774 * 120.59000 * 124.79306 * 12 11 10 14 14 O 1.21280 * 120.00386 * 355.78085 * 13 12 11 15 15 C 1.50707 * 119.99874 * 175.77863 * 13 12 11 16 16 O 1.42903 * 109.67294 * 318.31652 * 15 13 12 17 17 C 1.53323 * 109.67360 * 78.82288 * 15 13 12 18 18 C 1.52729 * 108.38584 * 189.55140 * 17 15 13 19 19 C 1.50631 * 110.59960 * 308.90362 * 18 17 15 20 20 C 1.38911 * 117.74529 * 197.49196 * 19 18 17 21 21 C 1.37935 * 120.54173 * 180.54171 * 20 19 18 22 22 C 1.38261 * 119.77031 * 0.02562 * 21 20 19 23 23 C 1.37934 * 119.77654 * 359.87583 * 22 21 20 24 24 C 1.37668 * 122.56701 * 17.82309 * 19 18 17 25 25 C 1.50630 * 122.56185 * 359.25566 * 24 19 18 26 26 C 1.46960 * 118.81450 * 304.77285 * 12 11 10 27 27 C 1.47000 * 120.61692 * 332.16218 * 9 7 2 28 28 H 0.96993 * 120.00669 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.60822 * 5.01933 * 10 9 7 30 30 H 1.08998 * 109.61328 * 244.67267 * 10 9 7 31 31 H 1.09001 * 109.60833 * 169.08709 * 11 10 9 32 32 H 1.08999 * 109.60906 * 289.59725 * 11 10 9 33 33 H 0.96699 * 113.99548 * 304.32201 * 16 15 13 34 34 H 1.09003 * 109.68690 * 309.30495 * 17 15 13 35 35 H 1.08991 * 109.68340 * 69.86703 * 17 15 13 36 36 H 1.09000 * 109.25912 * 188.59905 * 18 17 15 37 37 H 1.08997 * 109.19445 * 69.15691 * 18 17 15 38 38 H 1.07995 * 119.72784 * 0.56320 * 20 19 18 39 39 H 1.07999 * 120.11658 * 180.02562 * 21 20 19 40 40 H 1.08003 * 120.11578 * 179.89418 * 22 21 20 41 41 H 1.07999 * 119.73004 * 180.02562 * 23 22 21 42 42 H 1.09004 * 109.25295 * 257.43738 * 25 24 19 43 43 H 1.09000 * 109.21900 * 137.99682 * 25 24 19 44 44 H 1.08998 * 109.61224 * 174.97220 * 26 12 11 45 45 H 1.09000 * 109.60813 * 295.48197 * 26 12 11 46 46 H 1.09005 * 109.46428 * 115.40953 * 27 9 7 47 47 H 1.08997 * 109.75431 * 355.07713 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3838 2.1121 -1.3940 5 1 1.5090 2.6172 0.8107 6 1 3.5999 1.4100 0.5831 7 6 2.0102 -1.2021 -0.0005 8 1 1.5005 -2.1202 0.2520 9 7 3.3413 -1.2240 -0.3214 10 6 4.2239 -2.2677 0.2188 11 6 4.9240 -2.9748 -0.9484 12 7 5.4957 -1.9559 -1.8399 13 6 6.8063 -1.9765 -2.1536 14 8 7.5401 -2.7939 -1.6397 15 6 7.3599 -0.9836 -3.1430 16 8 6.4525 -0.8381 -4.2374 17 6 7.5618 0.3721 -2.4559 18 6 7.8918 1.4103 -3.5264 19 6 9.0159 0.9268 -4.4048 20 6 9.6855 1.8690 -5.1753 21 6 10.7166 1.4881 -6.0086 22 6 11.0869 0.1578 -6.0788 23 6 10.4245 -0.7789 -5.3130 24 6 9.3879 -0.3970 -4.4709 25 6 8.7128 -1.4704 -3.6579 26 6 4.6127 -0.9145 -2.3835 27 6 3.9125 -0.2074 -1.2165 28 1 -0.4851 0.8399 0.0004 29 1 3.6337 -2.9899 0.7829 30 1 4.9694 -1.8144 0.8720 31 1 5.7198 -3.6134 -0.5648 32 1 4.2008 -3.5774 -1.4978 33 1 6.2345 -1.6693 -4.6808 34 1 6.6485 0.6592 -1.9347 35 1 8.3851 0.3043 -1.7449 36 1 8.1875 2.3421 -3.0444 37 1 7.0076 1.5871 -4.1388 38 1 9.3968 2.9082 -5.1210 39 1 11.2328 2.2264 -6.6043 40 1 11.8922 -0.1469 -6.7307 41 1 10.7146 -1.8178 -5.3681 42 1 9.3469 -1.7318 -2.8106 43 1 8.5641 -2.3523 -4.2809 44 1 5.2028 -0.1924 -2.9477 45 1 3.8673 -1.3705 -3.0351 46 1 4.6357 0.3953 -0.6669 47 1 3.1187 0.4335 -1.6002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375061250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:17 Heat of formation + Delta-G solvation = -40.626348 kcal Electronic energy + Delta-G solvation = -29663.647755 eV Core-core repulsion = 25811.314293 eV Total energy + Delta-G solvation = -3852.333462 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.13491 -40.47845 -38.83728 -38.10333 -35.73247 -35.10384 -33.55545 -33.29950 -32.41849 -30.93267 -29.76736 -28.90366 -26.04314 -24.91089 -24.73491 -23.96143 -23.04239 -22.36997 -20.73046 -20.47034 -19.30033 -18.13333 -17.67337 -17.28826 -17.18536 -16.69902 -16.43246 -16.00770 -15.81973 -15.73188 -15.58024 -15.38702 -15.27222 -14.99532 -14.58757 -14.16705 -14.04079 -13.96799 -13.87562 -13.63297 -13.50371 -13.22380 -12.95280 -12.87993 -12.73542 -12.52450 -12.33072 -12.16745 -12.10798 -11.88101 -11.83119 -11.65627 -11.49047 -11.22427 -10.89420 -10.39867 -9.93069 -9.61460 -9.40369 -8.88572 -8.16459 -5.53893 0.49839 0.52343 1.28299 1.36946 1.42412 1.49713 1.85894 2.39524 2.87601 2.99958 3.05874 3.20074 3.26377 3.57051 3.68348 3.94909 4.01107 4.05057 4.07463 4.13909 4.23483 4.29622 4.33329 4.36404 4.45695 4.50466 4.55362 4.59968 4.66237 4.70884 4.77892 4.84105 4.84829 4.89177 4.92681 5.00550 5.13871 5.14169 5.19215 5.30604 5.43100 5.62669 5.67041 5.77969 5.82138 6.09530 6.17366 6.31378 6.54157 6.84755 7.00899 7.55887 7.95566 9.03044 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019458 B = 0.003605 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.621485 B = 7765.443625 C = 8777.771497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.036 4.036 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.315 1.315 6 H -0.258 1.258 7 C -0.250 4.250 8 H 0.055 0.945 9 N -0.620 5.620 10 C 0.136 3.864 11 C 0.100 3.900 12 N -0.589 5.589 13 C 0.489 3.511 14 O -0.573 6.573 15 C 0.138 3.862 16 O -0.536 6.536 17 C -0.111 4.111 18 C -0.068 4.068 19 C -0.079 4.079 20 C -0.130 4.130 21 C -0.128 4.128 22 C -0.130 4.130 23 C -0.130 4.130 24 C -0.082 4.082 25 C -0.082 4.082 26 C 0.094 3.906 27 C 0.104 3.896 28 H 0.262 0.738 29 H 0.074 0.926 30 H 0.029 0.971 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.392 0.608 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.130 0.870 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.132 0.868 45 H 0.070 0.930 46 H 0.036 0.964 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.617 1.979 -13.497 26.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.231 4.231 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.244 1.244 6 H -0.183 1.183 7 C -0.379 4.379 8 H 0.073 0.927 9 N -0.345 5.345 10 C 0.010 3.990 11 C -0.024 4.024 12 N -0.321 5.321 13 C 0.277 3.723 14 O -0.453 6.453 15 C 0.094 3.906 16 O -0.345 6.345 17 C -0.149 4.149 18 C -0.105 4.105 19 C -0.079 4.079 20 C -0.148 4.148 21 C -0.146 4.146 22 C -0.148 4.148 23 C -0.148 4.148 24 C -0.082 4.082 25 C -0.120 4.120 26 C -0.030 4.030 27 C -0.022 4.022 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.047 0.953 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.243 0.757 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.148 0.852 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.150 0.850 45 H 0.088 0.912 46 H 0.054 0.946 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 22.879 2.237 -13.043 26.431 hybrid contribution -0.547 -0.068 0.343 0.649 sum 22.333 2.168 -12.700 25.783 Atomic orbital electron populations 1.69912 1.07396 1.27294 1.55974 1.25940 0.95924 1.01148 1.00069 0.85910 0.78699 0.79800 0.77736 1.19330 1.24412 1.18255 1.18874 0.84203 0.93353 1.41487 0.92704 1.44391 1.05467 1.31601 1.52994 1.21380 0.92549 0.91113 0.93966 1.22081 0.97804 0.90532 0.92027 1.48088 1.08086 1.29087 1.46789 1.21787 0.81609 0.85290 0.83590 1.90653 1.58016 1.41021 1.55589 1.21075 0.89419 0.94614 0.85463 1.86536 1.64316 1.37623 1.45977 1.21710 1.02997 0.92034 0.98146 1.20319 0.96951 0.97862 0.95381 1.19729 0.97200 0.92820 0.98121 1.21389 0.96605 0.99892 0.96929 1.21376 0.97429 0.96740 0.99005 1.21334 1.00444 0.93358 0.99669 1.21327 0.96095 1.00553 0.96780 1.19469 0.97145 0.93483 0.98133 1.20795 0.94315 0.97013 0.99845 1.22648 0.93841 0.91036 0.95457 1.21904 0.96465 0.92058 0.91748 0.92868 0.90762 0.95285 0.88876 0.91134 0.75718 0.90642 0.89876 0.89024 0.89404 0.84713 0.84105 0.84174 0.85212 0.89627 0.89508 0.85011 0.91204 0.94574 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.25 13.97 21.65 0.30 -58.94 16 2 C -0.04 -2.07 5.33 84.86 0.45 -1.61 16 3 Si 0.95 44.89 24.31 68.60 1.67 46.56 16 4 H -0.27 -11.61 6.75 99.48 0.67 -10.94 16 5 H -0.31 -15.38 7.11 99.48 0.71 -14.67 16 6 H -0.26 -11.63 6.02 99.48 0.60 -11.03 16 7 C -0.25 -13.77 10.08 84.03 0.85 -12.92 16 8 H 0.06 3.31 8.06 -2.91 -0.02 3.29 16 9 N -0.62 -28.13 2.78 -698.10 -1.94 -30.07 16 10 C 0.14 5.18 6.67 86.42 0.58 5.76 16 11 C 0.10 3.24 6.60 86.42 0.57 3.81 16 12 N -0.59 -18.06 2.95 -818.02 -2.41 -20.47 16 13 C 0.49 14.08 6.61 87.66 0.58 14.66 16 14 O -0.57 -19.53 15.23 -3.03 -0.05 -19.57 16 15 C 0.14 3.10 0.54 -11.52 -0.01 3.10 16 16 O -0.54 -10.65 8.91 -148.98 -1.33 -11.98 16 17 C -0.11 -2.44 4.69 30.61 0.14 -2.29 16 18 C -0.07 -1.28 5.28 29.74 0.16 -1.12 16 19 C -0.08 -1.54 5.68 -19.86 -0.11 -1.65 16 20 C -0.13 -2.21 9.61 22.36 0.21 -2.00 16 21 C -0.13 -1.93 10.05 22.20 0.22 -1.71 16 22 C -0.13 -2.00 10.05 22.20 0.22 -1.78 16 23 C -0.13 -2.29 9.61 22.36 0.21 -2.08 16 24 C -0.08 -1.65 5.62 -19.86 -0.11 -1.76 16 25 C -0.08 -1.72 4.31 29.73 0.13 -1.59 16 26 C 0.09 2.90 5.20 86.41 0.45 3.35 16 27 C 0.10 4.10 4.29 86.41 0.37 4.47 16 28 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 29 H 0.07 2.81 7.93 -2.39 -0.02 2.79 16 30 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 2.92 6.99 -2.39 -0.02 2.91 16 32 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.39 5.83 9.03 -74.06 -0.67 5.17 16 34 H 0.07 1.79 6.63 -2.39 -0.02 1.78 16 35 H 0.08 1.82 8.10 -2.39 -0.02 1.80 16 36 H 0.09 1.43 8.13 -2.39 -0.02 1.41 16 37 H 0.09 1.69 7.73 -2.39 -0.02 1.67 16 38 H 0.13 1.79 8.05 -2.91 -0.02 1.77 16 39 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 40 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 41 H 0.13 1.90 8.05 -2.91 -0.02 1.88 16 42 H 0.09 2.01 7.55 -2.38 -0.02 1.99 16 43 H 0.09 1.66 8.12 -2.39 -0.02 1.64 16 44 H 0.13 3.47 3.81 -2.39 -0.01 3.47 16 45 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.04 1.41 6.83 -2.38 -0.02 1.40 16 47 H 0.06 2.76 4.13 -2.39 -0.01 2.75 16 Total: -1.00 -69.09 356.23 1.35 -67.74 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.18 Total: 22.09 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 4.92 Total: 4.64 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -4.05 Total: -109.49 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -1.37 Total: -31.55 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.67 Total: 46.56 kcal Total: -69.09 1.35 -67.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375061250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.117 kcal (2) G-P(sol) polarization free energy of solvation -69.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds