Wall clock time and date at job start Tue Mar 31 2020 05:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47352 * 2 1 4 4 C 1.53001 * 109.46973 * 120.00345 * 2 1 3 5 5 C 1.50700 * 109.46957 * 182.75852 * 4 2 1 6 6 H 1.08001 * 119.99851 * 355.14017 * 5 4 2 7 7 C 1.37875 * 120.00373 * 175.14603 * 5 4 2 8 8 N 1.31516 * 119.99716 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00378 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47304 * 89.99412 * 9 7 5 11 11 H 1.48497 * 109.47314 * 209.99947 * 9 7 5 12 12 H 1.48506 * 109.47255 * 329.99733 * 9 7 5 13 13 N 1.46898 * 109.46866 * 239.99975 * 2 1 3 14 14 C 1.46847 * 111.00003 * 72.95053 * 13 2 1 15 15 C 1.53043 * 109.52321 * 174.16104 * 14 13 2 16 16 C 1.53114 * 109.28240 * 59.17784 * 15 14 13 17 17 N 1.46889 * 109.57916 * 182.41085 * 16 15 14 18 18 C 1.46475 * 111.00182 * 194.23863 * 17 16 15 19 19 C 1.53183 * 109.90081 * 162.99877 * 18 17 16 20 20 S 1.81814 * 108.67586 * 62.63533 * 19 18 17 21 21 O 1.42107 * 108.69982 * 193.42579 * 20 19 18 22 22 O 1.42100 * 108.82880 * 61.99002 * 20 19 18 23 23 C 1.81814 * 101.02407 * 307.68207 * 20 19 18 24 24 C 1.46470 * 111.00231 * 68.38296 * 17 16 15 25 25 C 1.53119 * 109.16024 * 302.35115 * 16 15 14 26 26 C 1.46848 * 111.00498 * 308.73994 * 13 2 1 27 27 H 1.08998 * 109.47099 * 299.99690 * 1 2 3 28 28 H 1.09003 * 109.47271 * 59.99806 * 1 2 3 29 29 H 1.09004 * 109.47297 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46895 * 302.75192 * 4 2 1 31 31 H 1.08996 * 109.47260 * 62.75838 * 4 2 1 32 32 H 0.97001 * 119.99864 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.46277 * 294.17566 * 14 13 2 34 34 H 1.08993 * 109.46355 * 54.14570 * 14 13 2 35 35 H 1.09008 * 109.49848 * 299.23979 * 15 14 13 36 36 H 1.08998 * 109.53357 * 179.14185 * 15 14 13 37 37 H 1.09003 * 109.52160 * 62.24603 * 16 15 14 38 38 H 1.09000 * 109.39884 * 283.12955 * 18 17 16 39 39 H 1.08996 * 109.39946 * 42.87017 * 18 17 16 40 40 H 1.09002 * 109.59997 * 302.88215 * 19 18 17 41 41 H 1.08990 * 109.60341 * 182.39703 * 19 18 17 42 42 H 1.09000 * 109.60511 * 292.56194 * 23 20 19 43 43 H 1.08999 * 109.60715 * 172.07236 * 23 20 19 44 44 H 1.09003 * 109.39943 * 317.13258 * 24 17 16 45 45 H 1.09001 * 109.39834 * 76.95768 * 24 17 16 46 46 H 1.09001 * 109.50193 * 297.70575 * 25 16 15 47 47 H 1.09002 * 109.50462 * 177.59455 * 25 16 15 48 48 H 1.09009 * 109.46038 * 305.86273 * 26 13 2 49 49 H 1.09006 * 109.46049 * 65.83268 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5454 -0.6624 1.2839 6 1 4.0881 -0.2303 0.4561 7 6 4.2300 -1.1602 2.3722 8 7 3.5692 -1.6861 3.3804 9 14 6.0961 -1.0878 2.4149 10 1 6.5278 0.1880 3.0403 11 1 6.6178 -2.2295 3.2082 12 1 6.6263 -1.1643 1.0298 13 7 2.0196 -0.6925 -1.1994 14 6 1.8160 0.1275 -2.4005 15 6 2.4661 -0.5584 -3.6043 16 6 1.8401 -1.9425 -3.7965 17 7 2.4992 -2.6299 -4.9148 18 6 1.7234 -3.7954 -5.3452 19 6 2.1781 -4.2385 -6.7393 20 16 3.9216 -4.7459 -6.6490 21 8 4.4329 -4.8566 -7.9703 22 8 4.0320 -5.8530 -5.7650 23 6 4.6669 -3.2897 -5.8557 24 6 3.8831 -2.9720 -4.5785 25 6 2.0233 -2.7593 -2.5143 26 6 1.3862 -2.0096 -1.3422 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6369 -0.2368 2.1385 31 1 1.7176 -1.7622 1.2248 32 1 4.0508 -2.0360 4.1462 33 1 0.7480 0.2456 -2.5828 34 1 2.2696 1.1075 -2.2523 35 1 3.5366 -0.6644 -3.4284 36 1 2.3019 0.0426 -4.4987 37 1 0.7768 -1.8348 -4.0108 38 1 1.8742 -4.6116 -4.6387 39 1 0.6654 -3.5350 -5.3753 40 1 2.0744 -3.4089 -7.4386 41 1 1.5694 -5.0790 -7.0724 42 1 4.6194 -2.4386 -6.5351 43 1 5.7059 -3.5020 -5.6038 44 1 4.3501 -2.1302 -4.0671 45 1 3.8917 -3.8434 -3.9237 46 1 3.0869 -2.9000 -2.3214 47 1 1.5423 -3.7306 -2.6298 48 1 1.5274 -2.5818 -0.4252 49 1 0.3201 -1.8815 -1.5297 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429684635.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:09 Heat of formation + Delta-G solvation = -58.105476 kcal Electronic energy + Delta-G solvation = -28068.876796 eV Core-core repulsion = 24351.229334 eV Total energy + Delta-G solvation = -3717.647463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.03039 -37.96460 -37.15208 -36.26840 -34.36487 -32.50162 -32.19606 -30.82434 -30.39826 -28.12065 -27.29862 -24.53469 -23.88237 -23.12846 -22.87836 -21.44442 -19.68339 -19.01942 -18.58190 -17.30608 -16.60924 -16.18349 -16.11149 -15.94167 -15.78606 -15.12130 -14.82948 -14.53588 -14.31733 -14.03758 -13.69523 -13.61855 -13.05115 -13.02830 -12.73580 -12.58175 -12.48663 -12.36774 -12.24399 -12.18488 -12.07466 -11.84927 -11.72980 -11.51555 -11.24271 -11.03308 -10.88729 -10.83725 -10.60034 -10.51090 -10.43641 -10.36412 -10.13375 -9.88696 -9.21264 -9.00193 -8.60929 -8.27809 -7.51282 -5.90804 -3.88547 -0.24240 2.37679 3.27653 3.36863 3.38282 3.43662 3.47385 3.80309 4.17205 4.34786 4.44808 4.51732 4.54797 4.65011 4.76601 4.87012 4.98126 4.99254 5.19460 5.33949 5.36960 5.43169 5.45913 5.47607 5.54395 5.59884 5.69609 5.72948 5.77780 5.85262 5.90312 5.98809 6.03528 6.15835 6.24086 6.32833 6.46670 6.52616 6.66351 6.67311 6.76550 6.95602 7.51470 7.65145 7.88041 7.98592 8.10612 8.56951 9.18309 9.73462 11.21245 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.003357 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.452526 B = 8338.338766 C = 9534.757475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.069 0.931 4 C 0.031 3.969 5 C -0.489 4.489 6 H 0.062 0.938 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.510 5.510 14 C 0.054 3.946 15 C -0.106 4.106 16 C 0.092 3.908 17 N -0.550 5.550 18 C 0.063 3.937 19 C -0.594 4.594 20 S 2.409 3.591 21 O -0.948 6.948 22 O -0.938 6.938 23 C -0.592 4.592 24 C 0.056 3.944 25 C -0.152 4.152 26 C 0.062 3.938 27 H 0.055 0.945 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.021 0.979 31 H 0.014 0.986 32 H 0.257 0.743 33 H 0.024 0.976 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.109 0.891 45 H 0.064 0.936 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.087 0.913 49 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.409 -1.453 -20.037 20.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.020 4.020 3 H 0.087 0.913 4 C -0.006 4.006 5 C -0.528 4.528 6 H 0.080 0.920 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.234 5.234 14 C -0.075 4.075 15 C -0.144 4.144 16 C -0.015 4.015 17 N -0.274 5.274 18 C -0.066 4.066 19 C -0.724 4.724 20 S 2.592 3.408 21 O -0.945 6.945 22 O -0.935 6.935 23 C -0.722 4.722 24 C -0.073 4.073 25 C -0.191 4.191 26 C -0.067 4.067 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.032 0.968 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.159 0.841 41 H 0.153 0.847 42 H 0.159 0.841 43 H 0.155 0.845 44 H 0.127 0.873 45 H 0.082 0.918 46 H 0.099 0.901 47 H 0.079 0.921 48 H 0.105 0.895 49 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -4.441 -2.106 -20.514 21.095 hybrid contribution -0.240 0.295 0.856 0.937 sum -4.681 -1.811 -19.658 20.289 Atomic orbital electron populations 1.22520 0.99781 1.01279 1.00621 1.21912 0.90004 0.98276 0.91852 0.91282 1.19178 0.96442 0.95031 0.89949 1.21173 0.91513 1.37621 1.02498 0.92010 1.25012 0.97947 0.96015 0.95934 1.69961 1.35132 1.41610 1.07807 0.86653 0.86512 0.77280 0.77850 1.21024 1.21602 1.19964 1.62049 1.57756 1.02126 1.01430 1.22058 0.97584 0.97168 0.90674 1.21649 1.01157 0.94230 0.97362 1.21805 0.98039 0.94152 0.87519 1.61449 1.01792 1.25519 1.38601 1.21756 1.00134 0.92893 0.91851 1.30193 1.24305 1.12069 1.05880 1.08246 0.79105 0.77810 0.75679 1.93589 1.77797 1.86358 1.36716 1.93609 1.85430 1.47765 1.66744 1.30195 1.11304 1.20584 1.10160 1.21893 0.88158 1.03723 0.93478 1.22338 1.03189 0.98260 0.95287 1.21967 0.94538 0.91524 0.98624 0.92573 0.94257 0.92866 0.96096 0.96803 0.93328 0.95790 0.90945 0.90751 0.91367 0.90010 0.92173 0.88502 0.84126 0.84709 0.84130 0.84455 0.87300 0.91819 0.90145 0.92093 0.89480 0.95767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.95 8.40 37.16 0.31 -2.64 16 2 C 0.09 1.67 2.27 -67.71 -0.15 1.51 16 3 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16 4 C 0.03 0.76 4.39 -27.88 -0.12 0.64 16 5 C -0.49 -13.27 8.80 -34.44 -0.30 -13.57 16 6 H 0.06 1.67 7.68 -52.49 -0.40 1.27 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 9 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.51 -8.71 4.19 -226.69 -0.95 -9.66 16 14 C 0.05 0.74 5.18 -3.83 -0.02 0.72 16 15 C -0.11 -1.21 5.43 -26.65 -0.14 -1.35 16 16 C 0.09 0.97 2.23 -67.60 -0.15 0.82 16 17 N -0.55 -4.94 4.34 -227.00 -0.98 -5.92 16 18 C 0.06 0.48 4.95 -3.96 -0.02 0.47 16 19 C -0.59 -3.77 6.58 37.25 0.25 -3.53 16 20 S 2.41 21.34 5.34 -107.50 -0.57 20.76 16 21 O -0.95 -11.41 18.11 -57.81 -1.05 -12.46 16 22 O -0.94 -11.83 18.10 -57.81 -1.05 -12.88 16 23 C -0.59 -4.43 6.58 37.25 0.24 -4.19 16 24 C 0.06 0.53 4.00 -3.96 -0.02 0.51 16 25 C -0.15 -1.95 4.72 -26.65 -0.13 -2.08 16 26 C 0.06 0.97 4.47 -3.84 -0.02 0.96 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.04 0.56 6.93 -51.93 -0.36 0.20 16 29 H 0.05 0.85 6.45 -51.93 -0.33 0.52 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.01 0.36 6.42 -51.93 -0.33 0.02 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.02 0.31 6.98 -51.93 -0.36 -0.05 16 34 H 0.07 1.00 7.98 -51.93 -0.41 0.59 16 35 H 0.07 0.92 6.30 -51.92 -0.33 0.60 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.82 7.74 -51.93 -0.40 0.41 16 38 H 0.06 0.50 7.39 -51.93 -0.38 0.12 16 39 H 0.10 0.65 7.71 -51.93 -0.40 0.24 16 40 H 0.14 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.13 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.14 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.14 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.11 1.09 5.99 -51.93 -0.31 0.78 16 45 H 0.06 0.65 7.04 -51.93 -0.37 0.28 16 46 H 0.08 1.16 6.55 -51.93 -0.34 0.82 16 47 H 0.06 0.71 7.38 -51.93 -0.38 0.32 16 48 H 0.09 1.63 6.30 -51.92 -0.33 1.30 16 49 H 0.02 0.35 6.57 -51.93 -0.34 0.01 16 LS Contribution 372.31 15.07 5.61 5.61 Total: -1.00 -34.27 372.31 -11.94 -46.21 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -8.30 Total: -1.80 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -0.37 Total: -20.42 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: -1.20 Total: -41.69 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -2.09 Total: -25.34 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 21.34 SS G_CDS: -0.57 Total: 20.76 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.27 -11.94 -46.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429684635.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.894 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds