Wall clock time and date at job start Tue Mar 31 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47352 * 2 1 4 4 C 1.53001 * 109.46973 * 120.00345 * 2 1 3 5 5 C 1.50700 * 109.46957 * 182.75852 * 4 2 1 6 6 H 1.08001 * 119.99851 * 355.14017 * 5 4 2 7 7 C 1.37875 * 120.00373 * 175.14603 * 5 4 2 8 8 N 1.31516 * 119.99716 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00378 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47304 * 89.99412 * 9 7 5 11 11 H 1.48497 * 109.47314 * 209.99947 * 9 7 5 12 12 H 1.48506 * 109.47255 * 329.99733 * 9 7 5 13 13 N 1.46898 * 109.46866 * 239.99975 * 2 1 3 14 14 C 1.46847 * 111.00003 * 72.95053 * 13 2 1 15 15 C 1.53043 * 109.52321 * 174.16104 * 14 13 2 16 16 C 1.53114 * 109.28240 * 59.17784 * 15 14 13 17 17 N 1.46889 * 109.57916 * 182.41085 * 16 15 14 18 18 C 1.46475 * 111.00182 * 194.23863 * 17 16 15 19 19 C 1.53183 * 109.90081 * 162.99877 * 18 17 16 20 20 S 1.81814 * 108.67586 * 62.63533 * 19 18 17 21 21 O 1.42107 * 108.69982 * 193.42579 * 20 19 18 22 22 O 1.42100 * 108.82880 * 61.99002 * 20 19 18 23 23 C 1.81814 * 101.02407 * 307.68207 * 20 19 18 24 24 C 1.46470 * 111.00231 * 68.38296 * 17 16 15 25 25 C 1.53119 * 109.16024 * 302.35115 * 16 15 14 26 26 C 1.46848 * 111.00498 * 308.73994 * 13 2 1 27 27 H 1.08998 * 109.47099 * 299.99690 * 1 2 3 28 28 H 1.09003 * 109.47271 * 59.99806 * 1 2 3 29 29 H 1.09004 * 109.47297 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46895 * 302.75192 * 4 2 1 31 31 H 1.08996 * 109.47260 * 62.75838 * 4 2 1 32 32 H 0.97001 * 119.99864 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.46277 * 294.17566 * 14 13 2 34 34 H 1.08993 * 109.46355 * 54.14570 * 14 13 2 35 35 H 1.09008 * 109.49848 * 299.23979 * 15 14 13 36 36 H 1.08998 * 109.53357 * 179.14185 * 15 14 13 37 37 H 1.09003 * 109.52160 * 62.24603 * 16 15 14 38 38 H 1.09000 * 109.39884 * 283.12955 * 18 17 16 39 39 H 1.08996 * 109.39946 * 42.87017 * 18 17 16 40 40 H 1.09002 * 109.59997 * 302.88215 * 19 18 17 41 41 H 1.08990 * 109.60341 * 182.39703 * 19 18 17 42 42 H 1.09000 * 109.60511 * 292.56194 * 23 20 19 43 43 H 1.08999 * 109.60715 * 172.07236 * 23 20 19 44 44 H 1.09003 * 109.39943 * 317.13258 * 24 17 16 45 45 H 1.09001 * 109.39834 * 76.95768 * 24 17 16 46 46 H 1.09001 * 109.50193 * 297.70575 * 25 16 15 47 47 H 1.09002 * 109.50462 * 177.59455 * 25 16 15 48 48 H 1.09009 * 109.46038 * 305.86273 * 26 13 2 49 49 H 1.09006 * 109.46049 * 65.83268 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5454 -0.6624 1.2839 6 1 4.0881 -0.2303 0.4561 7 6 4.2300 -1.1602 2.3722 8 7 3.5692 -1.6861 3.3804 9 14 6.0961 -1.0878 2.4149 10 1 6.5278 0.1880 3.0403 11 1 6.6178 -2.2295 3.2082 12 1 6.6263 -1.1643 1.0298 13 7 2.0196 -0.6925 -1.1994 14 6 1.8160 0.1275 -2.4005 15 6 2.4661 -0.5584 -3.6043 16 6 1.8401 -1.9425 -3.7965 17 7 2.4992 -2.6299 -4.9148 18 6 1.7234 -3.7954 -5.3452 19 6 2.1781 -4.2385 -6.7393 20 16 3.9216 -4.7459 -6.6490 21 8 4.4329 -4.8566 -7.9703 22 8 4.0320 -5.8530 -5.7650 23 6 4.6669 -3.2897 -5.8557 24 6 3.8831 -2.9720 -4.5785 25 6 2.0233 -2.7593 -2.5143 26 6 1.3862 -2.0096 -1.3422 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6369 -0.2368 2.1385 31 1 1.7176 -1.7622 1.2248 32 1 4.0508 -2.0360 4.1462 33 1 0.7480 0.2456 -2.5828 34 1 2.2696 1.1075 -2.2523 35 1 3.5366 -0.6644 -3.4284 36 1 2.3019 0.0426 -4.4987 37 1 0.7768 -1.8348 -4.0108 38 1 1.8742 -4.6116 -4.6387 39 1 0.6654 -3.5350 -5.3753 40 1 2.0744 -3.4089 -7.4386 41 1 1.5694 -5.0790 -7.0724 42 1 4.6194 -2.4386 -6.5351 43 1 5.7059 -3.5020 -5.6038 44 1 4.3501 -2.1302 -4.0671 45 1 3.8917 -3.8434 -3.9237 46 1 3.0869 -2.9000 -2.3214 47 1 1.5423 -3.7306 -2.6298 48 1 1.5274 -2.5818 -0.4252 49 1 0.3201 -1.8815 -1.5297 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429684635.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:08 Heat of formation + Delta-G solvation = -84.585042 kcal Electronic energy + Delta-G solvation = -28070.025036 eV Core-core repulsion = 24351.229334 eV Total energy + Delta-G solvation = -3718.795703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.98793 -39.05023 -37.99122 -37.08332 -35.71488 -34.31360 -32.84383 -31.94512 -31.52893 -29.42531 -28.81665 -25.36025 -25.18936 -24.31371 -24.24334 -22.36266 -20.88051 -19.98663 -19.55211 -18.32419 -18.03483 -17.31787 -17.16420 -16.69965 -16.55388 -16.49932 -16.17725 -15.72803 -15.38894 -15.01757 -14.90852 -14.65580 -14.29764 -13.88362 -13.80237 -13.61792 -13.52888 -13.42677 -13.29814 -13.14196 -13.09690 -13.02194 -12.86399 -12.76321 -12.67424 -12.53479 -12.39298 -12.06320 -11.93505 -11.71789 -11.65320 -11.53285 -11.14986 -11.06609 -10.98672 -10.89314 -10.46742 -9.40410 -8.81382 -8.08905 -6.13021 -0.91045 1.41437 1.42330 1.53035 1.74435 2.47610 2.56475 2.72519 3.09388 3.16982 3.29843 3.55173 3.70650 3.84871 3.94764 4.00865 4.11541 4.20502 4.22318 4.31281 4.31459 4.45387 4.46994 4.49349 4.55328 4.63500 4.73953 4.79603 4.82927 4.86030 4.90323 4.95229 4.98798 5.02589 5.11611 5.23427 5.25739 5.27360 5.29483 5.48858 5.53571 5.74169 5.86822 5.91930 6.00301 6.36374 6.54885 6.61488 7.02246 7.53031 9.03229 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.003357 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.452526 B = 8338.338766 C = 9534.757475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.096 3.904 3 H 0.063 0.937 4 C 0.037 3.963 5 C -0.494 4.494 6 H 0.061 0.939 7 C -0.006 4.006 8 N -0.942 5.942 9 Si 0.953 3.047 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.266 1.266 13 N -0.532 5.532 14 C 0.055 3.945 15 C -0.100 4.100 16 C 0.101 3.899 17 N -0.539 5.539 18 C 0.053 3.947 19 C -0.572 4.572 20 S 2.408 3.592 21 O -0.984 6.984 22 O -0.985 6.985 23 C -0.581 4.581 24 C 0.051 3.949 25 C -0.147 4.147 26 C 0.067 3.933 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.050 0.950 30 H -0.010 1.010 31 H -0.009 1.009 32 H 0.257 0.743 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.051 0.949 39 H 0.120 0.880 40 H 0.166 0.834 41 H 0.157 0.843 42 H 0.164 0.836 43 H 0.145 0.855 44 H 0.103 0.897 45 H 0.049 0.951 46 H 0.058 0.942 47 H 0.072 0.928 48 H 0.044 0.956 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.185 -0.272 -22.867 23.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.012 4.012 3 H 0.082 0.918 4 C 0.000 4.000 5 C -0.533 4.533 6 H 0.079 0.921 7 C -0.202 4.202 8 N -0.585 5.585 9 Si 0.779 3.221 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.190 1.190 13 N -0.256 5.256 14 C -0.073 4.073 15 C -0.138 4.138 16 C -0.007 4.007 17 N -0.262 5.262 18 C -0.076 4.076 19 C -0.704 4.704 20 S 2.596 3.404 21 O -0.981 6.981 22 O -0.982 6.982 23 C -0.712 4.712 24 C -0.078 4.078 25 C -0.186 4.186 26 C -0.062 4.062 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.008 0.992 31 H 0.009 0.991 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.070 0.930 39 H 0.138 0.862 40 H 0.184 0.816 41 H 0.175 0.825 42 H 0.182 0.818 43 H 0.163 0.837 44 H 0.121 0.879 45 H 0.067 0.933 46 H 0.077 0.923 47 H 0.091 0.909 48 H 0.062 0.938 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.189 -0.941 -23.376 23.963 hybrid contribution -0.051 -0.046 1.767 1.768 sum -5.240 -0.988 -21.609 22.257 Atomic orbital electron populations 1.22374 0.97267 1.01560 1.01898 1.21571 0.91981 0.97040 0.90658 0.91850 1.19034 0.95240 0.94009 0.91743 1.21510 0.93031 1.36598 1.02117 0.92101 1.25843 1.02654 0.95919 0.95757 1.70097 1.36919 1.42943 1.08518 0.85624 0.80975 0.77349 0.78126 1.20180 1.21621 1.19043 1.61910 1.58608 1.02993 1.02109 1.22124 0.98857 0.96631 0.89707 1.21608 1.00147 0.94901 0.97172 1.21716 0.99184 0.93276 0.86546 1.61498 1.01419 1.26038 1.37262 1.21944 1.01234 0.92174 0.92216 1.30026 1.20856 1.13724 1.05819 1.07983 0.80436 0.77641 0.74332 1.93541 1.79350 1.87074 1.38138 1.93550 1.86667 1.50528 1.67501 1.30099 1.11426 1.20270 1.09425 1.21906 0.88897 1.02867 0.94154 1.22297 1.01597 0.99033 0.95672 1.21867 0.95758 0.90706 0.97876 0.92902 0.91308 0.93048 0.99192 0.99117 0.93419 0.94101 0.91253 0.92093 0.88847 0.88049 0.93034 0.86214 0.81611 0.82546 0.81824 0.83672 0.87921 0.93301 0.92326 0.90933 0.93779 0.94071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.37 8.40 71.98 0.60 -4.76 16 2 C 0.10 3.68 2.27 44.92 0.10 3.78 16 3 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 4 C 0.04 1.88 4.39 29.85 0.13 2.01 16 5 C -0.49 -27.53 8.80 25.60 0.23 -27.30 16 6 H 0.06 3.34 7.68 -2.91 -0.02 3.31 16 7 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 8 N -0.94 -57.79 13.29 21.45 0.28 -57.51 16 9 Si 0.95 45.20 29.54 68.60 2.03 47.22 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 13 N -0.53 -17.88 4.19 -871.11 -3.65 -21.53 16 14 C 0.05 1.36 5.18 86.33 0.45 1.81 16 15 C -0.10 -1.98 5.43 30.65 0.17 -1.82 16 16 C 0.10 1.81 2.23 45.00 0.10 1.91 16 17 N -0.54 -7.96 4.34 -872.08 -3.78 -11.74 16 18 C 0.05 0.64 4.95 86.45 0.43 1.06 16 19 C -0.57 -5.23 6.58 72.04 0.47 -4.75 16 20 S 2.41 39.71 5.34 -56.49 -0.30 39.41 16 21 O -0.98 -22.82 18.11 -127.39 -2.31 -25.13 16 22 O -0.99 -24.99 18.10 -127.39 -2.31 -27.30 16 23 C -0.58 -7.62 6.58 72.04 0.47 -7.15 16 24 C 0.05 0.88 4.00 86.45 0.35 1.22 16 25 C -0.15 -3.63 4.72 30.64 0.14 -3.48 16 26 C 0.07 2.07 4.47 86.32 0.39 2.45 16 27 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.07 1.74 6.93 -2.39 -0.02 1.73 16 29 H 0.05 1.61 6.45 -2.38 -0.02 1.59 16 30 H -0.01 -0.58 8.14 -2.39 -0.02 -0.59 16 31 H -0.01 -0.52 6.42 -2.39 -0.02 -0.53 16 32 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 33 H 0.04 0.89 6.98 -2.39 -0.02 0.88 16 34 H 0.07 1.76 7.98 -2.39 -0.02 1.74 16 35 H 0.06 1.39 6.30 -2.38 -0.02 1.38 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.10 1.52 7.74 -2.39 -0.02 1.50 16 38 H 0.05 0.75 7.39 -2.39 -0.02 0.73 16 39 H 0.12 1.00 7.71 -2.39 -0.02 0.98 16 40 H 0.17 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.16 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.16 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.10 1.93 5.99 -2.39 -0.01 1.92 16 45 H 0.05 0.99 7.04 -2.39 -0.02 0.97 16 46 H 0.06 1.70 6.55 -2.39 -0.02 1.69 16 47 H 0.07 1.60 7.38 -2.39 -0.02 1.58 16 48 H 0.04 1.73 6.30 -2.38 -0.01 1.72 16 49 H 0.04 1.13 6.57 -2.38 -0.02 1.11 16 Total: -1.00 -77.07 372.31 -4.62 -81.69 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 0.93 Total: 9.79 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 4.49 Total: -34.91 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -7.15 Total: -90.78 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -4.61 Total: -52.42 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: 39.71 SS G_CDS: -0.30 Total: 39.41 kcal Total: -77.07 -4.62 -81.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429684635.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.896 kcal (2) G-P(sol) polarization free energy of solvation -77.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds