Wall clock time and date at job start Tue Mar 31 2020 05:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46895 * 111.00165 * 2 1 4 4 C 1.50702 * 109.46902 * 66.04572 * 3 2 1 5 5 O 1.21273 * 120.00113 * 0.02562 * 4 3 2 6 6 N 1.34782 * 119.99710 * 180.02562 * 4 3 2 7 7 C 1.46499 * 119.99602 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.46602 * 184.79227 * 7 6 4 9 9 C 1.50694 * 115.55031 * 294.81113 * 8 7 6 10 10 H 1.08008 * 119.99906 * 95.20931 * 9 8 7 11 11 C 1.37882 * 120.00284 * 274.93190 * 9 8 7 12 12 N 1.31509 * 119.99919 * 355.42076 * 11 9 8 13 13 Si 1.86800 * 120.00242 * 175.41794 * 11 9 8 14 14 H 1.48502 * 109.47002 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47091 * 119.99801 * 13 11 9 16 16 H 1.48497 * 109.47138 * 240.00628 * 13 11 9 17 17 C 1.53003 * 117.49932 * 80.48439 * 8 7 6 18 18 C 1.52998 * 117.49502 * 149.14583 * 8 7 6 19 19 C 1.38396 * 110.99879 * 236.04653 * 2 1 3 20 20 N 1.32907 * 120.77372 * 123.95211 * 19 2 1 21 21 C 1.32042 * 121.19581 * 180.02562 * 20 19 2 22 22 N 1.31646 * 122.45975 * 0.02562 * 21 20 19 23 23 C 1.32895 * 120.64465 * 359.97438 * 22 21 20 24 24 N 1.37192 * 134.92469 * 180.02562 * 23 22 21 25 25 H 0.97001 * 126.28188 * 0.02562 * 24 23 22 26 26 C 1.36321 * 107.44751 * 179.97438 * 24 23 22 27 27 N 1.30150 * 109.97385 * 0.02562 * 26 24 23 28 28 C 1.35471 * 109.43846 * 359.73333 * 27 26 24 29 29 H 1.09005 * 109.47177 * 60.00030 * 1 2 3 30 30 H 1.09000 * 109.46859 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47093 * 299.99943 * 1 2 3 32 32 H 1.09003 * 109.47094 * 306.04789 * 3 2 1 33 33 H 1.08998 * 109.47680 * 186.04960 * 3 2 1 34 34 H 0.97004 * 119.99767 * 359.97438 * 6 4 3 35 35 H 1.08993 * 109.47604 * 64.79661 * 7 6 4 36 36 H 1.09000 * 109.47101 * 304.78675 * 7 6 4 37 37 H 0.97004 * 120.00506 * 184.99920 * 12 11 9 38 38 H 1.08997 * 117.49622 * 214.99831 * 17 8 7 39 39 H 1.09000 * 117.49928 * 0.02562 * 17 8 7 40 40 H 1.08996 * 117.50254 * 359.97148 * 18 8 7 41 41 H 1.09005 * 117.49689 * 144.97447 * 18 8 7 42 42 H 1.07999 * 118.77228 * 180.02562 * 21 20 19 43 43 H 1.08001 * 125.01651 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 8 1.0055 1.4453 2.1410 6 7 2.0181 3.3201 1.5233 7 6 1.6700 3.9768 2.7858 8 6 2.1126 5.4406 2.7381 9 6 3.6001 5.6677 2.6573 10 1 4.0722 5.8172 1.6975 11 6 4.3577 5.6902 3.8091 12 7 3.7718 5.6038 4.9833 13 14 6.2163 5.8433 3.7018 14 1 6.6248 5.9244 2.2764 15 1 6.6536 7.0719 4.4122 16 1 6.8480 4.6560 4.3314 17 6 1.2060 6.4291 2.0018 18 6 1.2851 6.4548 3.5304 19 6 1.9650 -0.7216 -1.0717 20 7 2.8041 -0.1628 -1.9378 21 6 3.2819 -0.8434 -2.9635 22 7 2.9608 -2.1000 -3.1889 23 6 2.1282 -2.7426 -2.3765 24 7 1.6067 -4.0107 -2.3291 25 1 1.7842 -4.7282 -2.9573 26 6 0.7941 -4.0779 -1.2367 27 7 0.7868 -2.9334 -0.6169 28 6 1.5966 -2.0635 -1.2671 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.5611 1.9273 -0.8309 33 1 3.0798 1.3444 -0.1083 34 1 2.5235 3.8013 0.8495 35 1 2.1744 3.4715 3.6094 36 1 0.5915 3.9279 2.9354 37 1 4.2960 5.6924 5.7947 38 1 1.6856 7.2436 1.4590 39 1 0.2941 6.0366 1.5518 40 1 0.4254 6.0794 4.0851 41 1 1.8169 7.2862 3.9934 42 1 3.9616 -0.3507 -3.6430 43 1 0.2382 -4.9518 -0.9306 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431180735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:11 Heat of formation + Delta-G solvation = 112.190126 kcal Electronic energy + Delta-G solvation = -27505.289907 eV Core-core repulsion = 23588.335472 eV Total energy + Delta-G solvation = -3916.954435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.86877 -40.05704 -39.06682 -37.34410 -36.45534 -33.49653 -33.28973 -32.36843 -31.95336 -30.26546 -28.66120 -26.51222 -25.79287 -24.90807 -24.02363 -23.00659 -21.72928 -21.15512 -19.81934 -19.38813 -19.16961 -18.13042 -17.28032 -16.74326 -16.37338 -15.99325 -15.57855 -15.35373 -14.84619 -14.78691 -14.61246 -14.41342 -14.29199 -13.85242 -13.56713 -13.42876 -12.87937 -12.51575 -12.25874 -12.18351 -11.74270 -11.62538 -11.57891 -11.32709 -10.99081 -10.92744 -10.69363 -10.50648 -10.23566 -10.02802 -9.70390 -9.53484 -9.37449 -9.17908 -9.02756 -8.48921 -8.31436 -8.20171 -8.08496 -6.06771 -4.16592 0.41972 0.98453 2.14195 2.40802 3.02841 3.16759 3.26396 3.35866 3.37508 3.55175 3.70973 3.93523 3.96125 4.22671 4.36572 4.44597 4.68407 5.10046 5.17423 5.20908 5.22459 5.37104 5.43580 5.49629 5.55147 5.61274 6.02809 6.03524 6.09855 6.28715 6.34221 6.47499 6.56404 6.58343 6.70656 6.75367 6.88831 6.99140 7.12665 7.27967 7.36423 7.40523 7.53857 7.82248 7.93153 8.27484 8.34483 8.83689 8.87073 9.50912 11.00404 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.017944 B = 0.002645 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.044590 B =10584.411835 C =11265.699847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.441 5.441 3 C 0.041 3.959 4 C 0.503 3.497 5 O -0.542 6.542 6 N -0.701 5.701 7 C 0.165 3.835 8 C 0.024 3.976 9 C -0.500 4.500 10 H 0.061 0.939 11 C 0.073 3.927 12 N -0.874 5.874 13 Si 0.890 3.110 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.283 1.283 17 C -0.211 4.211 18 C -0.142 4.142 19 C 0.434 3.566 20 N -0.570 5.570 21 C 0.349 3.651 22 N -0.547 5.547 23 C 0.289 3.711 24 N -0.583 5.583 25 H 0.430 0.570 26 C 0.256 3.744 27 N -0.452 5.452 28 C -0.067 4.067 29 H 0.034 0.966 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.402 0.598 35 H 0.068 0.932 36 H 0.040 0.960 37 H 0.261 0.739 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.207 0.793 43 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.674 -16.749 -16.529 24.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.155 5.155 3 C -0.089 4.089 4 C 0.287 3.713 5 O -0.420 6.420 6 N -0.350 5.350 7 C 0.042 3.958 8 C 0.023 3.977 9 C -0.538 4.538 10 H 0.079 0.921 11 C -0.131 4.131 12 N -0.510 5.510 13 Si 0.717 3.283 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.209 1.209 17 C -0.248 4.248 18 C -0.181 4.181 19 C 0.185 3.815 20 N -0.294 5.294 21 C 0.058 3.942 22 N -0.270 5.270 23 C 0.046 3.954 24 N -0.198 5.198 25 H 0.270 0.730 26 C -0.032 4.032 27 N -0.171 5.171 28 C -0.193 4.193 29 H 0.052 0.948 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.100 0.900 33 H 0.137 0.863 34 H 0.236 0.764 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.223 0.777 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -5.844 -16.765 -15.043 23.271 hybrid contribution 1.260 -0.388 -1.214 1.792 sum -4.584 -17.153 -16.257 24.073 Atomic orbital electron populations 1.22808 0.81282 1.05029 1.03053 1.58066 1.10844 1.14005 1.32556 1.22046 1.03654 0.86520 0.96646 1.20236 0.80411 0.82286 0.88324 1.90645 1.40625 1.64161 1.46585 1.45931 1.55803 1.12381 1.20922 1.21000 0.96878 0.93664 0.84266 1.19048 0.92792 0.86312 0.99515 1.20396 0.89558 1.50807 0.92998 0.92082 1.24992 0.98342 0.94311 0.95462 1.69995 1.35640 1.48179 0.97227 0.86578 0.85785 0.77629 0.78261 1.19638 1.21079 1.20936 1.23016 1.01384 1.04715 0.95679 1.22467 1.00825 1.03545 0.91219 1.19545 0.88684 0.87769 0.85466 1.68518 1.16854 1.38297 1.05778 1.24619 0.93255 0.84765 0.91587 1.67320 1.17069 1.11062 1.31598 1.18865 0.95377 0.87281 0.93922 1.42835 1.39917 1.10520 1.26532 0.72988 1.25616 0.94291 0.98888 0.84370 1.70364 1.19383 0.99824 1.27538 1.19664 1.05316 0.95867 0.98415 0.94759 0.88834 0.87381 0.90011 0.86325 0.76384 0.91400 0.94153 0.92921 0.90391 0.91755 0.91842 0.89527 0.77718 0.75602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.98 60.07 0.54 0.86 16 2 N -0.44 -6.76 4.52 -182.02 -0.82 -7.58 16 3 C 0.04 0.61 4.73 -4.98 -0.02 0.58 16 4 C 0.50 9.21 7.55 -10.98 -0.08 9.13 16 5 O -0.54 -11.68 14.31 5.56 0.08 -11.60 16 6 N -0.70 -13.26 5.48 -60.29 -0.33 -13.59 16 7 C 0.16 3.68 5.50 -4.04 -0.02 3.66 16 8 C 0.02 0.56 1.47 -155.66 -0.23 0.33 16 9 C -0.50 -12.75 8.59 -34.44 -0.30 -13.04 16 10 H 0.06 1.53 7.82 -52.48 -0.41 1.12 16 11 C 0.07 1.93 5.43 -17.82 -0.10 1.84 16 12 N -0.87 -24.23 12.65 55.43 0.70 -23.53 16 13 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 14 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 C -0.21 -4.33 9.96 -26.69 -0.27 -4.59 16 18 C -0.14 -3.24 9.14 -26.69 -0.24 -3.49 16 19 C 0.43 6.21 6.42 -154.65 -0.99 5.22 16 20 N -0.57 -7.36 8.77 -13.61 -0.12 -7.48 16 21 C 0.35 3.77 12.25 -92.07 -1.13 2.64 16 22 N -0.55 -6.31 10.47 -13.90 -0.15 -6.46 16 23 C 0.29 3.30 8.51 -155.81 -1.33 1.98 16 24 N -0.58 -4.13 6.20 -13.25 -0.08 -4.21 16 25 H 0.43 1.49 8.96 -40.82 -0.37 1.12 16 26 C 0.26 1.79 12.98 -89.49 -1.16 0.63 16 27 N -0.45 -5.39 9.85 -11.84 -0.12 -5.51 16 28 C -0.07 -0.89 6.57 -84.54 -0.56 -1.45 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 1.28 6.23 -51.93 -0.32 0.95 16 31 H 0.11 1.69 5.88 -51.93 -0.31 1.39 16 32 H 0.08 1.04 8.12 -51.93 -0.42 0.62 16 33 H 0.12 1.71 7.55 -51.93 -0.39 1.32 16 34 H 0.40 6.93 8.33 -40.82 -0.34 6.59 16 35 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 36 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 37 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 38 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 42 H 0.21 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.23 0.36 8.06 -52.49 -0.42 -0.06 16 LS Contribution 365.47 15.07 5.51 5.51 Total: -1.00 -34.02 365.47 -11.73 -45.75 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -5.50 Total: 8.83 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -5.88 Total: 4.29 kcal Atomic # 7 Polarization: -67.44 SS G_CDS: -0.92 Total: -68.36 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.08 Total: -11.60 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.02 -11.73 -45.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431180735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.942 kcal (2) G-P(sol) polarization free energy of solvation -34.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds