Wall clock time and date at job start Tue Mar 31 2020 05:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46895 * 111.00165 * 2 1 4 4 C 1.50702 * 109.46902 * 66.04572 * 3 2 1 5 5 O 1.21273 * 120.00113 * 0.02562 * 4 3 2 6 6 N 1.34782 * 119.99710 * 180.02562 * 4 3 2 7 7 C 1.46499 * 119.99602 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.46602 * 184.79227 * 7 6 4 9 9 C 1.50694 * 115.55031 * 294.81113 * 8 7 6 10 10 H 1.08008 * 119.99906 * 95.20931 * 9 8 7 11 11 C 1.37882 * 120.00284 * 274.93190 * 9 8 7 12 12 N 1.31509 * 119.99919 * 355.42076 * 11 9 8 13 13 Si 1.86800 * 120.00242 * 175.41794 * 11 9 8 14 14 H 1.48502 * 109.47002 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47091 * 119.99801 * 13 11 9 16 16 H 1.48497 * 109.47138 * 240.00628 * 13 11 9 17 17 C 1.53003 * 117.49932 * 80.48439 * 8 7 6 18 18 C 1.52998 * 117.49502 * 149.14583 * 8 7 6 19 19 C 1.38396 * 110.99879 * 236.04653 * 2 1 3 20 20 N 1.32907 * 120.77372 * 123.95211 * 19 2 1 21 21 C 1.32042 * 121.19581 * 180.02562 * 20 19 2 22 22 N 1.31646 * 122.45975 * 0.02562 * 21 20 19 23 23 C 1.32895 * 120.64465 * 359.97438 * 22 21 20 24 24 N 1.37192 * 134.92469 * 180.02562 * 23 22 21 25 25 H 0.97001 * 126.28188 * 0.02562 * 24 23 22 26 26 C 1.36321 * 107.44751 * 179.97438 * 24 23 22 27 27 N 1.30150 * 109.97385 * 0.02562 * 26 24 23 28 28 C 1.35471 * 109.43846 * 359.73333 * 27 26 24 29 29 H 1.09005 * 109.47177 * 60.00030 * 1 2 3 30 30 H 1.09000 * 109.46859 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47093 * 299.99943 * 1 2 3 32 32 H 1.09003 * 109.47094 * 306.04789 * 3 2 1 33 33 H 1.08998 * 109.47680 * 186.04960 * 3 2 1 34 34 H 0.97004 * 119.99767 * 359.97438 * 6 4 3 35 35 H 1.08993 * 109.47604 * 64.79661 * 7 6 4 36 36 H 1.09000 * 109.47101 * 304.78675 * 7 6 4 37 37 H 0.97004 * 120.00506 * 184.99920 * 12 11 9 38 38 H 1.08997 * 117.49622 * 214.99831 * 17 8 7 39 39 H 1.09000 * 117.49928 * 0.02562 * 17 8 7 40 40 H 1.08996 * 117.50254 * 359.97148 * 18 8 7 41 41 H 1.09005 * 117.49689 * 144.97447 * 18 8 7 42 42 H 1.07999 * 118.77228 * 180.02562 * 21 20 19 43 43 H 1.08001 * 125.01651 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 8 1.0055 1.4453 2.1410 6 7 2.0181 3.3201 1.5233 7 6 1.6700 3.9768 2.7858 8 6 2.1126 5.4406 2.7381 9 6 3.6001 5.6677 2.6573 10 1 4.0722 5.8172 1.6975 11 6 4.3577 5.6902 3.8091 12 7 3.7718 5.6038 4.9833 13 14 6.2163 5.8433 3.7018 14 1 6.6248 5.9244 2.2764 15 1 6.6536 7.0719 4.4122 16 1 6.8480 4.6560 4.3314 17 6 1.2060 6.4291 2.0018 18 6 1.2851 6.4548 3.5304 19 6 1.9650 -0.7216 -1.0717 20 7 2.8041 -0.1628 -1.9378 21 6 3.2819 -0.8434 -2.9635 22 7 2.9608 -2.1000 -3.1889 23 6 2.1282 -2.7426 -2.3765 24 7 1.6067 -4.0107 -2.3291 25 1 1.7842 -4.7282 -2.9573 26 6 0.7941 -4.0779 -1.2367 27 7 0.7868 -2.9334 -0.6169 28 6 1.5966 -2.0635 -1.2671 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.5611 1.9273 -0.8309 33 1 3.0798 1.3444 -0.1083 34 1 2.5235 3.8013 0.8495 35 1 2.1744 3.4715 3.6094 36 1 0.5915 3.9279 2.9354 37 1 4.2960 5.6924 5.7947 38 1 1.6856 7.2436 1.4590 39 1 0.2941 6.0366 1.5518 40 1 0.4254 6.0794 4.0851 41 1 1.8169 7.2862 3.9934 42 1 3.9616 -0.3507 -3.6430 43 1 0.2382 -4.9518 -0.9306 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431180735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:10 Heat of formation + Delta-G solvation = 89.985662 kcal Electronic energy + Delta-G solvation = -27506.252765 eV Core-core repulsion = 23588.335472 eV Total energy + Delta-G solvation = -3917.917293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.63112 -41.18376 -40.24149 -38.71611 -37.94172 -34.94648 -34.30582 -33.93653 -33.17204 -31.17441 -29.88483 -27.97852 -27.32715 -26.42198 -24.82523 -23.97757 -22.91287 -22.47426 -21.39099 -21.01135 -20.10391 -19.00394 -18.39115 -18.16185 -17.57122 -17.21504 -16.77795 -16.63264 -16.50332 -16.04966 -15.71920 -15.70039 -15.30815 -15.10211 -14.86692 -14.58398 -14.27652 -14.00732 -13.84769 -13.46733 -13.16356 -12.94449 -12.87657 -12.75988 -12.60660 -12.53069 -12.31367 -11.99839 -11.51981 -11.38377 -10.99696 -10.92155 -10.71041 -10.43463 -10.41841 -10.23638 -10.00135 -9.81134 -9.17429 -8.07965 -6.21770 -0.40405 0.12386 1.41895 1.46399 1.51464 1.55083 1.68894 1.74250 1.92412 2.43366 2.54510 2.74111 3.04443 3.19731 3.20536 3.37372 3.52012 3.69163 3.89590 4.04643 4.16756 4.27447 4.32877 4.36621 4.47411 4.52387 4.57997 4.68039 4.75511 4.79816 4.95593 5.02921 5.06626 5.23570 5.31409 5.33734 5.58444 5.62549 5.72922 5.77833 5.80615 5.84033 6.30885 6.38857 6.68912 6.76404 6.87228 7.08427 7.37568 7.48266 8.99152 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.017944 B = 0.002645 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.044590 B =10584.411835 C =11265.699847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.463 5.463 3 C 0.057 3.943 4 C 0.504 3.496 5 O -0.576 6.576 6 N -0.696 5.696 7 C 0.182 3.818 8 C 0.003 3.997 9 C -0.502 4.502 10 H 0.066 0.934 11 C 0.023 3.977 12 N -0.908 5.908 13 Si 0.948 3.052 14 H -0.259 1.259 15 H -0.284 1.284 16 H -0.291 1.291 17 C -0.175 4.175 18 C -0.155 4.155 19 C 0.410 3.590 20 N -0.577 5.577 21 C 0.340 3.660 22 N -0.549 5.549 23 C 0.276 3.724 24 N -0.567 5.567 25 H 0.449 0.551 26 C 0.289 3.711 27 N -0.504 5.504 28 C -0.086 4.086 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.123 0.877 34 H 0.412 0.588 35 H 0.024 0.976 36 H 0.040 0.960 37 H 0.258 0.742 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.240 0.760 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.553 -18.222 -19.295 27.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.177 5.177 3 C -0.073 4.073 4 C 0.290 3.710 5 O -0.457 6.457 6 N -0.346 5.346 7 C 0.058 3.942 8 C 0.002 3.998 9 C -0.540 4.540 10 H 0.084 0.916 11 C -0.177 4.177 12 N -0.546 5.546 13 Si 0.774 3.226 14 H -0.183 1.183 15 H -0.210 1.210 16 H -0.217 1.217 17 C -0.212 4.212 18 C -0.193 4.193 19 C 0.162 3.838 20 N -0.302 5.302 21 C 0.049 3.951 22 N -0.272 5.272 23 C 0.031 3.969 24 N -0.183 5.183 25 H 0.292 0.708 26 C 0.001 3.999 27 N -0.224 5.224 28 C -0.212 4.212 29 H 0.066 0.934 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.123 0.877 33 H 0.141 0.859 34 H 0.248 0.752 35 H 0.043 0.957 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.256 0.744 43 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -5.700 -18.253 -17.882 26.181 hybrid contribution 1.162 -0.086 -0.411 1.235 sum -4.539 -18.339 -18.293 26.297 Atomic orbital electron populations 1.22644 0.81202 1.04861 1.02445 1.58073 1.11316 1.14049 1.34307 1.21893 1.03910 0.86759 0.94699 1.20865 0.79214 0.81683 0.89193 1.90632 1.42073 1.64837 1.48145 1.45793 1.56085 1.12809 1.19952 1.20549 0.96172 0.93035 0.84480 1.19070 0.92366 0.86943 1.01426 1.20730 0.90903 1.49441 0.92944 0.91621 1.25705 1.02126 0.94556 0.95360 1.70118 1.36901 1.49874 0.97718 0.85660 0.81253 0.77001 0.78663 1.18271 1.21040 1.21736 1.23001 1.01192 1.03149 0.93903 1.22388 1.00938 1.02944 0.93057 1.19606 0.89864 0.88355 0.85990 1.68493 1.16680 1.38886 1.06113 1.25329 0.93465 0.84819 0.91488 1.67409 1.16946 1.11363 1.31489 1.19166 0.95494 0.88705 0.93544 1.42898 1.39022 1.09573 1.26854 0.70760 1.26725 0.91937 0.98751 0.82448 1.70357 1.21138 1.01429 1.29468 1.19854 1.06017 0.95957 0.99336 0.93420 0.88820 0.89623 0.87698 0.85903 0.75207 0.95743 0.94136 0.93298 0.89641 0.89274 0.91324 0.91781 0.74379 0.70355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 8.98 127.69 1.15 2.09 16 2 N -0.46 -14.19 4.52 -729.80 -3.30 -17.49 16 3 C 0.06 1.65 4.73 85.56 0.40 2.05 16 4 C 0.50 18.59 7.55 87.66 0.66 19.26 16 5 O -0.58 -25.59 14.31 -3.01 -0.04 -25.63 16 6 N -0.70 -26.27 5.48 -463.06 -2.54 -28.81 16 7 C 0.18 8.26 5.50 86.38 0.48 8.74 16 8 C 0.00 0.12 1.47 -52.93 -0.08 0.05 16 9 C -0.50 -25.53 8.59 25.60 0.22 -25.31 16 10 H 0.07 3.21 7.82 -2.91 -0.02 3.19 16 11 C 0.02 1.23 5.43 84.66 0.46 1.69 16 12 N -0.91 -51.67 12.65 21.45 0.27 -51.40 16 13 Si 0.95 42.52 29.54 68.60 2.03 44.55 16 14 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 16 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 17 C -0.18 -6.91 9.96 30.62 0.30 -6.60 16 18 C -0.15 -7.09 9.14 30.62 0.28 -6.81 16 19 C 0.41 11.53 6.42 133.46 0.86 12.38 16 20 N -0.58 -14.27 8.77 -196.96 -1.73 -16.00 16 21 C 0.34 6.77 12.25 180.85 2.22 8.99 16 22 N -0.55 -11.68 10.47 -197.89 -2.07 -13.75 16 23 C 0.28 5.81 8.51 133.86 1.14 6.95 16 24 N -0.57 -6.36 6.20 -195.83 -1.21 -7.58 16 25 H 0.45 1.55 8.96 -92.71 -0.83 0.72 16 26 C 0.29 3.13 12.98 179.95 2.34 5.47 16 27 N -0.50 -11.32 9.85 -191.38 -1.89 -13.21 16 28 C -0.09 -2.23 6.57 39.69 0.26 -1.97 16 29 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.09 2.60 6.23 -2.39 -0.01 2.58 16 31 H 0.09 2.78 5.88 -2.39 -0.01 2.76 16 32 H 0.11 2.52 8.12 -2.39 -0.02 2.50 16 33 H 0.12 3.47 7.55 -2.39 -0.02 3.45 16 34 H 0.41 13.81 8.33 -92.71 -0.77 13.04 16 35 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.04 1.81 8.09 -2.39 -0.02 1.79 16 37 H 0.26 14.16 8.32 -92.71 -0.77 13.39 16 38 H 0.09 3.25 8.14 -2.39 -0.02 3.24 16 39 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 41 H 0.06 3.20 8.14 -2.38 -0.02 3.18 16 42 H 0.24 2.69 8.06 -2.91 -0.02 2.67 16 43 H 0.28 -0.48 8.06 -2.91 -0.02 -0.51 16 Total: -1.00 -76.32 365.47 -0.32 -76.64 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: -0.53 Total: 25.70 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 10.68 Total: 26.97 kcal Atomic # 7 Polarization: -135.76 SS G_CDS: -12.47 Total: -148.22 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.04 Total: -25.63 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -76.32 -0.32 -76.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431180735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.630 kcal (2) G-P(sol) polarization free energy of solvation -76.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds