Wall clock time and date at job start Tue Mar 31 2020 06:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46492 * 109.47600 * 2 1 4 4 C 1.46499 * 119.99794 * 270.00375 * 3 2 1 5 5 C 1.50702 * 109.47007 * 269.99762 * 4 3 2 6 6 H 1.07994 * 119.99679 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00107 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99820 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00177 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47152 * 59.99412 * 9 7 5 11 11 H 1.48496 * 109.47653 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46879 * 300.00104 * 9 7 5 13 13 C 1.34776 * 120.00348 * 89.99810 * 3 2 1 14 14 O 1.21276 * 120.00050 * 180.02562 * 13 3 2 15 15 C 1.50696 * 119.99613 * 0.02562 * 13 3 2 16 16 N 1.46910 * 109.46952 * 172.99074 * 15 13 3 17 17 C 1.46898 * 110.99763 * 274.88112 * 16 15 13 18 18 C 1.52999 * 109.47156 * 76.60502 * 17 16 15 19 19 O 1.42903 * 109.46758 * 62.33607 * 18 17 16 20 20 C 1.46902 * 111.00017 * 150.92767 * 16 15 13 21 21 H 1.09001 * 109.38509 * 312.56081 * 20 16 15 22 22 C 1.52578 * 109.38947 * 192.75838 * 20 16 15 23 23 C 1.52620 * 110.70224 * 169.07176 * 22 20 16 24 24 C 1.53096 * 109.86984 * 70.82216 * 23 22 20 25 25 S 1.81745 * 108.84333 * 296.93675 * 24 23 22 26 26 C 1.53091 * 109.39025 * 72.36146 * 20 16 15 27 27 H 1.09005 * 109.47016 * 300.00034 * 1 2 3 28 28 H 1.08996 * 109.47131 * 59.99846 * 1 2 3 29 29 H 1.09002 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47009 * 239.99525 * 2 1 3 31 31 H 1.09004 * 109.46854 * 120.00097 * 2 1 3 32 32 H 1.09001 * 109.47356 * 29.99325 * 4 3 2 33 33 H 1.08999 * 109.47467 * 149.99539 * 4 3 2 34 34 H 0.97002 * 120.00026 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.47293 * 52.99097 * 15 13 3 36 36 H 1.09005 * 109.47541 * 292.98794 * 15 13 3 37 37 H 1.09000 * 109.47396 * 316.60634 * 17 16 15 38 38 H 1.09002 * 109.46909 * 196.60349 * 17 16 15 39 39 H 1.08995 * 109.47059 * 302.33707 * 18 17 16 40 40 H 1.09002 * 109.46890 * 182.33506 * 18 17 16 41 41 H 0.96708 * 113.99607 * 174.96847 * 19 18 17 42 42 H 1.09002 * 109.22622 * 289.49774 * 22 20 16 43 43 H 1.09001 * 109.22368 * 48.85564 * 22 20 16 44 44 H 1.08998 * 109.46693 * 310.67923 * 23 22 20 45 45 H 1.09002 * 109.31891 * 190.86862 * 23 22 20 46 46 H 1.08996 * 109.58149 * 177.12353 * 24 23 22 47 47 H 1.09006 * 109.57809 * 56.74634 * 24 23 22 48 48 H 1.09001 * 109.57937 * 302.97921 * 26 20 16 49 49 H 1.09000 * 109.57738 * 63.36299 * 26 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6858 1.8348 -1.7038 6 1 4.3428 1.2306 -1.0958 7 6 4.1495 2.3902 -2.8775 8 7 3.3495 3.1263 -3.6176 9 14 5.9138 2.0971 -3.4165 10 1 6.1417 0.6405 -3.5943 11 1 6.1614 2.7970 -4.7026 12 1 6.8410 2.6204 -2.3812 13 6 2.2431 2.0165 1.1672 14 8 2.6470 3.1600 1.1671 15 6 1.9924 1.3059 2.4722 16 7 2.4669 2.1413 3.5836 17 6 3.9016 1.9346 3.8222 18 6 4.7082 2.6729 2.7521 19 8 4.4532 4.0758 2.8469 20 6 1.6884 1.8869 4.8031 21 1 0.6253 1.8973 4.5624 22 6 1.9859 2.9753 5.8302 23 6 1.0040 2.8997 6.9962 24 6 1.2963 1.6583 7.8430 25 16 1.0297 0.1768 6.8245 26 6 2.0675 0.5170 5.3717 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.5818 1.6875 -2.0284 33 1 2.0956 3.1409 -1.1385 34 1 3.6755 3.5167 -4.4436 35 1 2.5272 0.3562 2.4774 36 1 0.9241 1.1219 2.5865 37 1 4.1277 0.8693 3.7770 38 1 4.1654 2.3206 4.8069 39 1 4.4143 2.3161 1.7650 40 1 5.7711 2.4856 2.9046 41 1 4.9897 4.6143 2.2491 42 1 3.0014 2.8472 6.2050 43 1 1.9005 3.9518 5.3534 44 1 -0.0140 2.8433 6.6107 45 1 1.1082 3.7918 7.6139 46 1 0.6261 1.6361 8.7023 47 1 2.3309 1.6849 8.1853 48 1 1.9011 -0.2508 4.6162 49 1 3.1172 0.5214 5.6656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433209057.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:54 Heat of formation + Delta-G solvation = -73.407352 kcal Electronic energy + Delta-G solvation = -28298.555129 eV Core-core repulsion = 24580.244127 eV Total energy + Delta-G solvation = -3718.311002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.81134 -38.19355 -36.12697 -35.08911 -34.64513 -32.79650 -30.72441 -30.05497 -29.40208 -27.58769 -27.25132 -25.57823 -23.00859 -22.90073 -22.60593 -21.51638 -19.66642 -18.23864 -17.28471 -16.91343 -16.46870 -16.19055 -15.94625 -15.65270 -15.21657 -15.01948 -14.41381 -14.19918 -13.89538 -13.75945 -13.53631 -13.42389 -13.29282 -13.22364 -12.93700 -12.70757 -12.49422 -12.27262 -11.95985 -11.66981 -11.60751 -11.52311 -11.33486 -11.16038 -10.95298 -10.92482 -10.82720 -10.66437 -10.53943 -10.42474 -10.11506 -10.06298 -9.65381 -9.17503 -8.82027 -8.43528 -8.25897 -7.75555 -7.54023 -6.03994 -4.08936 1.51307 2.25659 3.29064 3.34206 3.35298 3.54754 3.60996 4.20195 4.37541 4.44226 4.53980 4.62654 4.65338 4.74712 4.94736 5.08144 5.17134 5.18309 5.24443 5.25746 5.30344 5.38889 5.41767 5.48488 5.50725 5.54031 5.65213 5.68399 5.73945 5.81383 5.83658 5.90840 6.03278 6.05754 6.13537 6.25456 6.39548 6.50113 6.94882 7.08907 7.19793 7.49439 7.62735 7.93611 8.25439 8.31363 8.53319 8.92100 9.26340 9.56601 11.03710 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.017712 B = 0.003409 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.481569 B = 8211.060260 C = 9025.499050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.604 5.604 4 C 0.250 3.750 5 C -0.524 4.524 6 H 0.054 0.946 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.499 3.501 14 O -0.497 6.497 15 C 0.032 3.968 16 N -0.494 5.494 17 C 0.057 3.943 18 C 0.082 3.918 19 O -0.544 6.544 20 C 0.090 3.910 21 H 0.094 0.906 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.082 4.082 25 S -0.266 6.266 26 C -0.115 4.115 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.028 0.972 33 H 0.042 0.958 34 H 0.263 0.737 35 H 0.058 0.942 36 H 0.093 0.907 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.027 0.973 41 H 0.370 0.630 42 H 0.062 0.938 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.103 0.897 47 H 0.081 0.919 48 H 0.102 0.898 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.717 -5.985 19.678 20.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.338 5.338 4 C 0.131 3.869 5 C -0.563 4.563 6 H 0.072 0.928 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.284 3.716 14 O -0.371 6.371 15 C -0.100 4.100 16 N -0.217 5.217 17 C -0.071 4.071 18 C 0.004 3.996 19 O -0.347 6.347 20 C -0.020 4.020 21 H 0.112 0.888 22 C -0.157 4.157 23 C -0.159 4.159 24 C -0.230 4.230 25 S -0.040 6.040 26 C -0.266 4.266 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.045 0.955 41 H 0.215 0.785 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.121 0.879 47 H 0.100 0.900 48 H 0.120 0.880 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.629 -5.851 20.020 21.365 hybrid contribution 2.297 -0.124 -0.912 2.475 sum -2.332 -5.975 19.108 20.156 Atomic orbital electron populations 1.22222 0.96928 1.01253 1.02313 1.21369 0.93443 0.84631 1.02271 1.48285 1.64783 1.13060 1.07717 1.19183 0.95912 0.93617 0.78198 1.21385 0.97014 1.31743 1.06180 0.92779 1.24923 0.97643 0.95016 0.96456 1.69921 1.35645 1.33387 1.14337 0.86610 0.85005 0.78199 0.77862 1.20344 1.21201 1.20306 1.20116 0.79492 0.87534 0.84468 1.90740 1.42945 1.16925 1.86450 1.22251 1.01443 0.94514 0.91749 1.61732 1.02579 1.54249 1.03103 1.22284 0.87753 0.97220 0.99806 1.22123 0.94851 0.83452 0.99215 1.86471 1.67416 1.16236 1.64572 1.22068 0.99019 0.90977 0.89908 0.88828 1.21550 0.98827 1.00615 0.94665 1.21746 1.00808 0.96716 0.96606 1.23493 1.05054 0.94678 0.99769 1.86856 1.64796 1.30377 1.21983 1.24385 1.01699 1.02674 0.97794 0.93162 0.92022 0.92347 0.90175 0.92231 0.95351 0.93955 0.92700 0.92421 0.88934 0.93836 0.90536 0.91854 0.95515 0.78522 0.91960 0.89216 0.90433 0.90571 0.87904 0.89994 0.87980 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.16 0.38 -1.87 16 2 C 0.11 1.69 5.95 -4.05 -0.02 1.66 16 3 N -0.60 -12.34 2.46 -175.07 -0.43 -12.77 16 4 C 0.25 6.40 5.16 -5.19 -0.03 6.38 16 5 C -0.52 -14.46 9.39 -34.44 -0.32 -14.79 16 6 H 0.05 1.48 7.81 -52.49 -0.41 1.07 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 9 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.50 9.96 6.26 -10.99 -0.07 9.89 16 14 O -0.50 -11.88 12.46 -13.73 -0.17 -12.05 16 15 C 0.03 0.46 3.53 -4.97 -0.02 0.45 16 16 N -0.49 -7.03 3.83 -228.28 -0.87 -7.90 16 17 C 0.06 0.78 3.92 -3.83 -0.01 0.76 16 18 C 0.08 1.36 6.34 37.16 0.24 1.60 16 19 O -0.54 -9.80 12.37 -54.52 -0.67 -10.48 16 20 C 0.09 1.02 1.97 -67.88 -0.13 0.88 16 21 H 0.09 1.10 7.62 -51.93 -0.40 0.70 16 22 C -0.12 -1.23 4.69 -27.14 -0.13 -1.36 16 23 C -0.12 -0.97 5.76 -26.88 -0.15 -1.13 16 24 C -0.08 -0.64 6.45 37.21 0.24 -0.40 16 25 S -0.27 -2.65 22.33 -107.50 -2.40 -5.05 16 26 C -0.12 -1.15 4.99 37.20 0.19 -0.96 16 27 H 0.05 0.64 7.44 -51.93 -0.39 0.26 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 31 H 0.06 0.78 6.25 -51.93 -0.32 0.45 16 32 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 33 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.06 0.76 6.24 -51.93 -0.32 0.43 16 36 H 0.09 1.21 6.83 -51.93 -0.35 0.86 16 37 H 0.04 0.52 7.06 -51.93 -0.37 0.16 16 38 H 0.08 0.96 6.07 -51.93 -0.32 0.65 16 39 H 0.06 1.28 5.17 -51.93 -0.27 1.01 16 40 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.37 5.84 9.12 45.56 0.42 6.26 16 42 H 0.06 0.64 6.69 -51.93 -0.35 0.29 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.08 0.66 8.05 -51.93 -0.42 0.24 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.08 0.61 8.14 -51.92 -0.42 0.18 16 48 H 0.10 1.01 7.41 -51.93 -0.38 0.62 16 49 H 0.08 0.83 6.88 -51.93 -0.36 0.47 16 LS Contribution 385.21 15.07 5.81 5.81 Total: -1.00 -32.52 385.21 -10.53 -43.06 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -7.56 Total: 5.77 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 0.05 Total: 2.75 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: -0.57 Total: -46.24 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.85 Total: -22.53 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -2.65 SS G_CDS: -2.40 Total: -5.05 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.52 -10.53 -43.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433209057.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.352 kcal (2) G-P(sol) polarization free energy of solvation -32.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds