Wall clock time and date at job start Tue Mar 31 2020 06:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47300 * 2 1 4 4 C 1.46500 * 119.99465 * 269.99774 * 3 2 1 5 5 C 1.50704 * 109.46936 * 90.00385 * 4 3 2 6 6 H 1.07988 * 119.99791 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99798 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99785 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00069 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46794 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47433 * 120.00145 * 9 7 5 12 12 H 1.48505 * 109.46867 * 240.00243 * 9 7 5 13 13 C 1.34771 * 119.99945 * 89.99946 * 3 2 1 14 14 O 1.21284 * 119.99685 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00290 * 0.02562 * 13 3 2 16 16 N 1.46905 * 109.47176 * 173.55744 * 15 13 3 17 17 C 1.46899 * 110.99617 * 297.52025 * 16 15 13 18 18 C 1.53002 * 109.46928 * 293.05816 * 17 16 15 19 19 O 1.42902 * 109.47052 * 68.00901 * 18 17 16 20 20 C 1.46895 * 110.99946 * 173.56638 * 16 15 13 21 21 H 1.08995 * 109.39342 * 64.14974 * 20 16 15 22 22 C 1.52575 * 109.39043 * 183.95466 * 20 16 15 23 23 C 1.52578 * 110.72820 * 190.82304 * 22 20 16 24 24 C 1.53104 * 109.95696 * 289.32138 * 23 22 20 25 25 S 1.81749 * 108.83833 * 63.02353 * 24 23 22 26 26 C 1.53108 * 109.38971 * 304.44573 * 20 16 15 27 27 H 1.08998 * 109.47413 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47540 * 300.00401 * 1 2 3 29 29 H 1.08997 * 109.46890 * 60.00181 * 1 2 3 30 30 H 1.08998 * 109.47540 * 239.99599 * 2 1 3 31 31 H 1.09007 * 109.46895 * 119.99975 * 2 1 3 32 32 H 1.09006 * 109.46759 * 209.99663 * 4 3 2 33 33 H 1.08992 * 109.47783 * 329.99570 * 4 3 2 34 34 H 0.97001 * 119.99763 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.46861 * 293.55314 * 15 13 3 36 36 H 1.09000 * 109.47066 * 53.55630 * 15 13 3 37 37 H 1.08992 * 109.47600 * 53.06242 * 17 16 15 38 38 H 1.09004 * 109.46858 * 173.06588 * 17 16 15 39 39 H 1.09004 * 109.47271 * 188.00836 * 18 17 16 40 40 H 1.08998 * 109.47178 * 308.00986 * 18 17 16 41 41 H 0.96699 * 114.00083 * 179.97438 * 19 18 17 42 42 H 1.09003 * 109.22598 * 311.14441 * 22 20 16 43 43 H 1.09004 * 109.22917 * 70.50097 * 22 20 16 44 44 H 1.08998 * 109.39523 * 49.47098 * 23 22 20 45 45 H 1.09005 * 109.39458 * 169.27481 * 23 22 20 46 46 H 1.08993 * 109.57782 * 182.82988 * 24 23 22 47 47 H 1.08999 * 109.57542 * 303.21930 * 24 23 22 48 48 H 1.08998 * 109.57490 * 296.64056 * 26 20 16 49 49 H 1.08995 * 109.57077 * 57.02103 * 26 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 1.0067 2.7822 -1.7038 6 1 0.1158 2.7247 -1.0962 7 6 0.9953 3.5055 -2.8776 8 7 2.0805 3.5758 -3.6172 9 14 -0.5615 4.3856 -3.4172 10 1 -1.6345 4.1509 -2.4177 11 1 -0.2946 5.8424 -3.5250 12 1 -0.9932 3.8624 -4.7383 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1601 1.1671 15 6 1.9923 1.3060 2.4723 16 7 2.4545 2.1472 3.5845 17 6 3.9025 2.3799 3.5020 18 6 4.6448 1.0624 3.7347 19 8 4.4028 0.1791 2.6377 20 6 2.0891 1.5561 4.8787 21 1 2.6071 0.6050 5.0014 22 6 2.4980 2.5042 6.0020 23 6 2.3806 1.8163 7.3588 24 6 0.9057 1.6114 7.7150 25 16 0.1543 0.5013 6.4876 26 6 0.5772 1.3182 4.9201 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.0645 2.7984 -1.1384 33 1 2.5507 1.3451 -2.0284 34 1 2.0724 4.0844 -4.4432 35 1 0.9252 1.1131 2.5818 36 1 2.5353 0.3609 2.4816 37 1 4.1525 2.7683 2.5148 38 1 4.1983 3.1027 4.2624 39 1 5.7143 1.2572 3.8152 40 1 4.2888 0.6027 4.6566 41 1 4.8440 -0.6776 2.7178 42 1 3.5298 2.8197 5.8477 43 1 1.8494 3.3802 5.9864 44 1 2.8809 0.8487 7.3186 45 1 2.8525 2.4363 8.1211 46 1 0.8279 1.1656 8.7065 47 1 0.3902 2.5717 7.7027 48 1 0.0553 2.2728 4.8533 49 1 0.2849 0.6809 4.0856 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433209059.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:57 Heat of formation + Delta-G solvation = -68.802111 kcal Electronic energy + Delta-G solvation = -28387.232328 eV Core-core repulsion = 24669.121025 eV Total energy + Delta-G solvation = -3718.111304 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.97669 -38.21485 -36.65308 -35.22283 -34.48916 -32.66814 -31.03838 -29.97422 -29.64541 -27.35103 -27.21317 -25.48709 -23.08353 -22.76130 -22.63439 -21.65228 -19.73065 -18.09421 -17.84434 -17.20970 -16.67544 -16.43645 -15.76642 -15.53054 -15.34132 -14.73362 -14.53563 -14.32430 -14.24680 -13.70018 -13.63226 -13.47425 -13.28181 -13.04620 -12.75159 -12.49426 -12.28215 -12.20859 -12.03880 -11.99463 -11.67852 -11.44647 -11.33115 -11.25858 -11.12913 -10.99910 -10.78961 -10.67899 -10.59926 -10.41709 -10.01964 -9.96100 -9.79279 -9.44724 -8.71475 -8.35942 -8.01003 -7.88712 -7.48524 -5.96621 -3.99957 1.55202 2.27048 3.34057 3.41591 3.45585 3.66248 3.71789 4.14481 4.30685 4.39321 4.47877 4.52426 4.61973 4.70103 4.91562 5.01730 5.10855 5.13966 5.28195 5.28976 5.29962 5.37461 5.40782 5.47859 5.50438 5.59960 5.63864 5.67319 5.72410 5.81929 5.90013 5.93796 5.99354 6.09153 6.23497 6.32976 6.40697 6.83799 7.00615 7.14982 7.24870 7.50980 7.56191 7.71572 8.01579 8.33933 8.61209 9.01447 9.31477 9.65018 11.11430 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.003423 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.921833 B = 8177.791171 C = 8669.924607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.113 3.887 3 N -0.598 5.598 4 C 0.248 3.752 5 C -0.517 4.517 6 H 0.058 0.942 7 C 0.059 3.941 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.518 3.482 14 O -0.534 6.534 15 C 0.021 3.979 16 N -0.507 5.507 17 C 0.045 3.955 18 C 0.034 3.966 19 O -0.558 6.558 20 C 0.083 3.917 21 H 0.056 0.944 22 C -0.127 4.127 23 C -0.118 4.118 24 C -0.083 4.083 25 S -0.267 6.267 26 C -0.077 4.077 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.029 0.971 34 H 0.261 0.739 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.045 0.955 41 H 0.370 0.630 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.102 0.898 47 H 0.084 0.916 48 H 0.094 0.906 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.569 -9.685 21.854 24.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 N -0.330 5.330 4 C 0.129 3.871 5 C -0.556 4.556 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 C 0.305 3.695 14 O -0.411 6.411 15 C -0.109 4.109 16 N -0.231 5.231 17 C -0.083 4.083 18 C -0.045 4.045 19 O -0.363 6.363 20 C -0.027 4.027 21 H 0.073 0.927 22 C -0.164 4.164 23 C -0.158 4.158 24 C -0.231 4.231 25 S -0.041 6.041 26 C -0.225 4.225 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.217 0.783 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.120 0.880 47 H 0.103 0.897 48 H 0.112 0.888 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.653 -8.967 21.589 23.436 hybrid contribution 0.416 0.330 -0.339 0.630 sum 2.069 -8.637 21.250 23.031 Atomic orbital electron populations 1.22241 0.96658 1.00708 1.03239 1.21346 0.94180 0.84058 1.01542 1.48169 1.64244 1.13001 1.07626 1.19220 0.97327 0.92338 0.78203 1.21511 0.97581 1.30613 1.05942 0.92332 1.24937 0.96356 0.96387 0.96569 1.69951 1.27383 1.41912 1.14379 0.86493 0.83381 0.79599 0.78245 1.19832 1.20977 1.21095 1.19977 0.78314 0.86577 0.84647 1.90609 1.46007 1.17556 1.86929 1.22453 1.01342 0.96927 0.90164 1.61850 1.14158 1.46893 1.00194 1.22573 0.85803 0.94087 1.05872 1.23085 0.99477 0.92836 0.89144 1.86683 1.74487 1.29407 1.45744 1.21841 0.93758 0.96868 0.90221 0.92659 1.21644 1.03267 0.98895 0.92627 1.21728 0.94799 1.01868 0.97389 1.23470 0.98287 1.01584 0.99786 1.86897 1.74715 1.39416 1.03045 1.23662 0.98519 1.04255 0.96105 0.92963 0.93489 0.90617 0.91026 0.91994 0.94114 0.95344 0.92943 0.89349 0.88936 0.87150 0.89400 0.93482 0.93667 0.78347 0.90483 0.90718 0.90848 0.90614 0.87954 0.89704 0.88772 0.87410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 10.24 37.15 0.38 -2.33 16 2 C 0.11 1.90 6.00 -4.04 -0.02 1.88 16 3 N -0.60 -12.95 2.46 -175.06 -0.43 -13.38 16 4 C 0.25 6.62 5.20 -5.19 -0.03 6.60 16 5 C -0.52 -14.83 8.92 -34.44 -0.31 -15.13 16 6 H 0.06 1.68 7.42 -52.49 -0.39 1.29 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 9 Si 0.89 22.30 29.54 -169.99 -5.02 17.27 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.52 11.05 7.18 -10.99 -0.08 10.97 16 14 O -0.53 -13.63 13.98 5.55 0.08 -13.55 16 15 C 0.02 0.34 3.40 -4.97 -0.02 0.32 16 16 N -0.51 -7.28 4.34 -228.28 -0.99 -8.27 16 17 C 0.04 0.62 5.10 -3.82 -0.02 0.60 16 18 C 0.03 0.36 6.84 37.16 0.25 0.62 16 19 O -0.56 -6.57 10.44 -35.23 -0.37 -6.94 16 20 C 0.08 0.91 1.36 -67.88 -0.09 0.82 16 21 H 0.06 0.60 5.97 -51.93 -0.31 0.29 16 22 C -0.13 -1.17 4.95 -27.16 -0.13 -1.30 16 23 C -0.12 -0.85 5.75 -26.89 -0.15 -1.01 16 24 C -0.08 -0.64 6.46 37.21 0.24 -0.40 16 25 S -0.27 -2.77 22.33 -107.50 -2.40 -5.17 16 26 C -0.08 -0.87 5.47 37.21 0.20 -0.66 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.73 7.42 -51.93 -0.39 0.35 16 29 H 0.07 1.43 7.26 -51.93 -0.38 1.05 16 30 H 0.07 1.18 7.89 -51.93 -0.41 0.77 16 31 H 0.06 0.87 6.27 -51.93 -0.33 0.54 16 32 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 33 H 0.03 0.77 7.89 -51.93 -0.41 0.36 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 35 H 0.09 1.33 5.08 -51.93 -0.26 1.06 16 36 H 0.09 1.34 4.04 -51.93 -0.21 1.13 16 37 H 0.11 2.01 5.70 -51.93 -0.30 1.72 16 38 H 0.09 1.04 6.23 -51.93 -0.32 0.72 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.42 5.92 -51.93 -0.31 0.11 16 41 H 0.37 2.67 9.12 45.56 0.42 3.09 16 42 H 0.08 0.68 5.90 -51.93 -0.31 0.38 16 43 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 44 H 0.07 0.53 8.06 -51.93 -0.42 0.12 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.11 1.25 6.03 -51.93 -0.31 0.94 16 LS Contribution 378.90 15.07 5.71 5.71 Total: -1.00 -34.30 378.90 -9.67 -43.97 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -7.11 Total: 4.12 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 0.13 Total: 2.57 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.68 Total: -47.99 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.29 Total: -20.49 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -2.40 Total: -5.17 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.30 -9.67 -43.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433209059.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.835 kcal (2) G-P(sol) polarization free energy of solvation -34.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds