Wall clock time and date at job start Tue Mar 31 2020 05:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.34954 * 125.52821 * 2 1 4 4 C 1.41203 * 108.24183 * 180.02562 * 3 2 1 5 5 N 1.32940 * 126.37845 * 179.97438 * 4 3 2 6 6 C 1.33834 * 119.99489 * 0.02562 * 5 4 3 7 7 O 1.21838 * 120.00246 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99535 * 180.02562 * 6 5 4 9 9 C 1.46506 * 120.00072 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47289 * 180.02562 * 9 8 6 11 11 C 1.50696 * 109.47242 * 180.02562 * 10 9 8 12 12 C 1.38598 * 120.79911 * 269.72481 * 11 10 9 13 13 N 1.32332 * 119.10538 * 179.71511 * 12 11 10 14 14 C 1.31798 * 120.81712 * 0.56812 * 13 12 11 15 15 N 1.31797 * 121.75614 * 359.70041 * 14 13 12 16 16 C 1.32336 * 120.81334 * 0.02562 * 15 14 13 17 17 N 1.37416 * 107.24508 * 0.24135 * 4 3 2 18 18 H 0.97000 * 126.36568 * 179.75707 * 17 4 3 19 19 N 1.36453 * 125.52232 * 180.02562 * 2 1 3 20 20 C 1.46500 * 125.85126 * 0.02562 * 19 2 1 21 21 C 1.50704 * 109.46850 * 85.00475 * 20 19 2 22 22 H 1.07995 * 120.00092 * 359.97438 * 21 20 19 23 23 C 1.37879 * 119.99846 * 179.97438 * 21 20 19 24 24 N 1.31514 * 120.00143 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00090 * 359.97438 * 23 21 20 26 26 H 1.48491 * 109.47433 * 90.00056 * 25 23 21 27 27 H 1.48503 * 109.47139 * 210.00508 * 25 23 21 28 28 H 1.48508 * 109.47161 * 329.99977 * 25 23 21 29 29 H 1.08998 * 109.47244 * 89.97055 * 1 2 3 30 30 H 1.08998 * 109.47310 * 209.97454 * 1 2 3 31 31 H 1.08997 * 109.46626 * 329.97393 * 1 2 3 32 32 H 1.08000 * 125.87855 * 0.02562 * 3 2 1 33 33 H 0.97001 * 120.00676 * 359.97438 * 8 6 5 34 34 H 1.09001 * 109.47060 * 300.00359 * 9 8 6 35 35 H 1.09004 * 109.47073 * 59.99848 * 9 8 6 36 36 H 1.09001 * 109.46832 * 299.99854 * 10 9 8 37 37 H 1.08996 * 109.46952 * 59.99873 * 10 9 8 38 38 H 1.08004 * 120.44694 * 359.97438 * 12 11 10 39 39 H 1.08001 * 119.12085 * 179.72780 * 14 13 12 40 40 H 1.08004 * 120.44559 * 179.97438 * 16 15 14 41 41 H 1.09004 * 109.47084 * 205.00187 * 20 19 2 42 42 H 1.09000 * 109.47591 * 325.00519 * 20 19 2 43 43 H 0.96998 * 120.00040 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2913 1.0983 0.0000 4 6 3.6396 0.6787 -0.0006 5 7 4.7105 1.4664 -0.0013 6 6 4.5627 2.7966 -0.0009 7 8 3.4467 3.2855 0.0005 8 7 5.6484 3.5951 -0.0021 9 6 5.4867 5.0512 -0.0011 10 6 6.8641 5.7173 -0.0035 11 6 6.6978 7.2151 -0.0018 12 6 6.6227 7.9220 -1.1916 13 7 6.4709 9.2360 -1.1510 14 6 6.4026 9.8726 0.0010 15 7 6.4758 9.2342 1.1517 16 6 6.6223 7.9195 1.1894 17 7 3.6386 -0.6954 -0.0065 18 1 4.4193 -1.2711 -0.0116 19 7 2.2999 -1.1106 -0.0005 20 6 1.8320 -2.4988 -0.0016 21 6 1.5549 -2.9343 -1.4175 22 1 1.7112 -2.2457 -2.2347 23 6 1.1017 -4.2119 -1.6697 24 7 0.8603 -4.5921 -2.9053 25 14 0.8320 -5.4032 -0.2563 26 1 -0.5613 -5.2742 0.2408 27 1 1.0625 -6.7920 -0.7287 28 1 1.7806 -5.0904 0.8427 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3632 0.8897 0.5142 32 1 1.9470 2.1219 0.0004 33 1 6.5369 3.2059 -0.0028 34 1 4.9346 5.3561 -0.8901 35 1 4.9372 5.3552 0.8899 36 1 7.4165 5.4125 0.8854 37 1 7.4132 5.4133 -0.8946 38 1 6.6829 7.4070 -2.1390 39 1 6.2829 10.9460 0.0021 40 1 6.6821 7.4024 2.1357 41 1 2.5984 -3.1409 0.4325 42 1 0.9180 -2.5748 0.5873 43 1 0.5411 -5.4907 -3.0826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529038371.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:08 Heat of formation + Delta-G solvation = 117.946391 kcal Electronic energy + Delta-G solvation = -26149.317306 eV Core-core repulsion = 22232.612481 eV Total energy + Delta-G solvation = -3916.704825 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.34914 -40.94576 -38.94398 -35.99502 -34.37420 -34.02152 -33.16782 -33.08392 -32.27828 -31.01895 -29.08585 -27.56763 -27.06365 -24.93235 -24.77535 -22.85116 -22.19123 -21.44632 -19.88680 -19.58718 -17.96480 -17.94212 -17.47425 -17.37752 -16.31390 -16.01082 -15.33110 -15.07463 -14.96392 -14.79717 -14.51919 -14.16715 -13.99547 -13.90621 -13.83342 -13.53140 -13.02799 -12.96490 -12.72552 -12.61465 -12.31739 -12.28144 -11.93728 -11.71038 -11.45147 -11.21815 -11.15355 -11.03933 -10.68639 -10.05641 -9.80579 -9.70591 -9.55350 -9.54315 -9.05614 -8.91027 -8.67748 -8.41443 -6.87352 -6.52459 -4.60597 0.51813 0.73336 1.69042 1.96360 2.94655 2.99397 3.05876 3.07462 3.36878 3.54528 3.83391 3.88650 3.96236 4.24788 4.28269 4.40989 4.54337 4.61529 4.75884 4.80914 4.96807 5.06372 5.07319 5.33631 5.45416 5.47154 5.64894 5.76690 5.79174 5.83713 5.98828 6.03489 6.05244 6.13545 6.25684 6.39041 6.59711 6.65987 6.92869 6.98379 7.31806 7.56497 7.72430 7.73232 8.00327 8.25426 8.39844 8.51624 9.00138 9.56372 10.59038 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.034712 B = 0.001766 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.433232 B =15847.890888 C =15943.460195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.191 3.809 3 C -0.331 4.331 4 C 0.492 3.508 5 N -0.712 5.712 6 C 0.685 3.315 7 O -0.631 6.631 8 N -0.732 5.732 9 C 0.146 3.854 10 C -0.084 4.084 11 C -0.180 4.180 12 C 0.153 3.847 13 N -0.519 5.519 14 C 0.286 3.714 15 N -0.520 5.520 16 C 0.153 3.847 17 N -0.470 5.470 18 H 0.445 0.555 19 N -0.344 5.344 20 C 0.229 3.771 21 C -0.561 4.561 22 H 0.085 0.915 23 C 0.084 3.916 24 N -0.876 5.876 25 Si 0.872 3.128 26 H -0.268 1.268 27 H -0.278 1.278 28 H -0.265 1.265 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.184 0.816 33 H 0.397 0.603 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.169 0.831 39 H 0.195 0.805 40 H 0.169 0.831 41 H 0.048 0.952 42 H 0.058 0.942 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.677 16.252 7.826 20.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 C -0.363 4.363 4 C 0.239 3.761 5 N -0.477 5.477 6 C 0.384 3.616 7 O -0.513 6.513 8 N -0.387 5.387 9 C 0.021 3.979 10 C -0.123 4.123 11 C -0.185 4.185 12 C -0.013 4.013 13 N -0.232 5.232 14 C -0.002 4.002 15 N -0.233 5.233 16 C -0.013 4.013 17 N -0.193 5.193 18 H 0.292 0.708 19 N -0.131 5.131 20 C 0.111 3.889 21 C -0.599 4.599 22 H 0.103 0.897 23 C -0.122 4.122 24 N -0.511 5.511 25 Si 0.698 3.302 26 H -0.193 1.193 27 H -0.203 1.203 28 H -0.190 1.190 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.201 0.799 33 H 0.231 0.769 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.186 0.814 39 H 0.212 0.788 40 H 0.186 0.814 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.506 16.844 7.699 20.380 hybrid contribution 0.235 -1.936 0.433 1.998 sum 8.741 14.908 8.132 19.099 Atomic orbital electron populations 1.20608 0.86368 1.03670 1.04541 1.21288 0.94416 0.85412 0.92254 1.22203 0.91109 1.00259 1.22769 1.18648 0.91078 0.81933 0.84483 1.68033 1.28657 1.03878 1.47117 1.16594 0.82946 0.84925 0.77129 1.90741 1.24374 1.78663 1.57494 1.44626 1.08565 1.04606 1.80920 1.20972 0.94879 0.79885 1.02195 1.20674 0.98187 0.88840 1.04575 1.21533 1.03016 0.98215 0.95745 1.23244 0.89886 0.89672 0.98455 1.68454 1.13439 1.10226 1.31089 1.24997 0.91171 1.01254 0.82759 1.68453 1.13492 1.10137 1.31179 1.23227 0.89994 0.89698 0.98392 1.44304 0.98543 1.04973 1.71488 0.70810 1.47294 0.92874 1.07337 1.65590 1.20278 0.95872 0.72633 1.00120 1.21229 1.48105 0.99865 0.90728 0.89698 1.24817 0.94052 0.97532 0.95837 1.69855 1.42761 1.19630 1.18900 0.86922 0.79567 0.81375 0.82334 1.19332 1.20278 1.18980 0.88850 0.90398 0.89476 0.79910 0.76896 0.92033 0.92076 0.89540 0.89486 0.81364 0.78812 0.81412 0.93450 0.92404 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.29 10.09 36.01 0.36 -0.93 16 2 C 0.19 3.35 6.92 -81.70 -0.57 2.78 16 3 C -0.33 -6.32 9.41 -39.62 -0.37 -6.69 16 4 C 0.49 9.54 8.07 -155.29 -1.25 8.29 16 5 N -0.71 -13.76 10.59 -15.79 -0.17 -13.93 16 6 C 0.68 12.99 8.47 -87.76 -0.74 12.24 16 7 O -0.63 -13.52 13.26 5.06 0.07 -13.45 16 8 N -0.73 -10.15 5.56 -65.42 -0.36 -10.51 16 9 C 0.15 1.62 5.66 -4.04 -0.02 1.59 16 10 C -0.08 -0.58 5.51 -27.89 -0.15 -0.73 16 11 C -0.18 -1.41 5.17 -104.36 -0.54 -1.94 16 12 C 0.15 1.29 11.01 -17.20 -0.19 1.10 16 13 N -0.52 -5.06 10.44 -14.58 -0.15 -5.21 16 14 C 0.29 2.54 12.29 -92.15 -1.13 1.41 16 15 N -0.52 -5.01 10.44 -14.58 -0.15 -5.16 16 16 C 0.15 1.26 11.01 -17.20 -0.19 1.07 16 17 N -0.47 -8.35 7.38 31.33 0.23 -8.12 16 18 H 0.44 6.81 8.96 -182.55 -1.64 5.17 16 19 N -0.34 -6.36 3.63 -58.03 -0.21 -6.57 16 20 C 0.23 4.44 5.00 -5.19 -0.03 4.41 16 21 C -0.56 -13.52 9.94 -34.44 -0.34 -13.86 16 22 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 23 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 24 N -0.88 -23.73 13.96 55.43 0.77 -22.96 16 25 Si 0.87 17.76 27.47 -169.99 -4.67 13.09 16 26 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 27 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 28 H -0.27 -5.04 6.54 56.52 0.37 -4.67 16 29 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.08 1.00 7.14 -51.93 -0.37 0.63 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.18 3.67 5.77 -52.49 -0.30 3.37 16 33 H 0.40 4.62 8.57 -40.82 -0.35 4.27 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.49 8.10 -51.93 -0.42 0.07 16 37 H 0.09 0.51 8.10 -51.93 -0.42 0.09 16 38 H 0.17 1.04 8.06 -52.48 -0.42 0.62 16 39 H 0.20 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.17 0.99 8.06 -52.48 -0.42 0.57 16 41 H 0.05 0.89 7.20 -51.93 -0.37 0.51 16 42 H 0.06 1.03 6.61 -51.93 -0.34 0.69 16 43 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 371.06 15.07 5.59 5.59 Total: -1.00 -33.15 371.06 -11.08 -44.23 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -6.77 Total: 12.28 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: -5.26 Total: 10.72 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: -0.04 Total: -72.46 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.07 Total: -13.45 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -4.67 Total: 13.09 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.15 -11.08 -44.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529038371.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.177 kcal (2) G-P(sol) polarization free energy of solvation -33.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds